data_3HJX # _model_server_result.job_id 98abu9VX3mmmF61GtM9M4w _model_server_result.datetime_utc '2024-12-25 15:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3HJX # _exptl.entry_id 3HJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HJX _cell.length_a 39.159 _cell.length_b 57.656 _cell.length_c 93.315 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_775 -x+2,-y+5/2,z -1 0 0 0 -1 0 0 0 1 78.318 144.14 0 3 'crystal symmetry operation' 8_576 x,-y+2,-z+3/2 1 0 0 0 -1 0 0 0 -1 0 115.312 139.9725 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 179 1_555 A SG CYS 89 A CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A ND1 HIS 15 A HIS 140 1_555 B CD CD . A CD 300 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 A ND1 HIS 15 A HIS 140 1_555 B CD CD . A CD 300 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.516 ? metalc ? metalc3 A OD1 ASP 22 A ASP 147 1_555 B CD CD . A CD 300 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.376 ? metalc ? metalc4 A OD1 ASP 22 A ASP 147 1_555 B CD CD . A CD 300 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 A OD2 ASP 22 A ASP 147 1_555 B CD CD . A CD 300 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 A OD2 ASP 22 A ASP 147 1_555 B CD CD . A CD 300 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.666 ? metalc ? metalc7 B CD CD . A CD 300 1_555 D O HOH . A HOH 350 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc8 B CD CD . A CD 300 1_555 D O HOH . A HOH 354 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.407 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HJX _atom_sites.fract_transf_matrix[1][1] 0.025537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 300 300 CD CD . C 3 CL A 1 301 301 CL CL . D 4 HOH A 1 302 302 HOH HOH . D 4 HOH A 2 303 303 HOH HOH . D 4 HOH A 3 304 304 HOH HOH . D 4 HOH A 4 305 305 HOH HOH . D 4 HOH A 5 306 306 HOH HOH . D 4 HOH A 6 307 307 HOH HOH . D 4 HOH A 7 308 308 HOH HOH . D 4 HOH A 8 309 309 HOH HOH . D 4 HOH A 9 310 310 HOH HOH . D 4 HOH A 10 311 311 HOH HOH . D 4 HOH A 11 312 312 HOH HOH . D 4 HOH A 12 313 313 HOH HOH . D 4 HOH A 13 314 314 HOH HOH . D 4 HOH A 14 315 315 HOH HOH . D 4 HOH A 15 316 316 HOH HOH . D 4 HOH A 16 317 317 HOH HOH . D 4 HOH A 17 318 318 HOH HOH . D 4 HOH A 18 319 319 HOH HOH . D 4 HOH A 19 320 320 HOH HOH . D 4 HOH A 20 321 321 HOH HOH . D 4 HOH A 21 322 322 HOH HOH . D 4 HOH A 22 323 323 HOH HOH . D 4 HOH A 23 324 324 HOH HOH . D 4 HOH A 24 325 325 HOH HOH . D 4 HOH A 25 326 326 HOH HOH . D 4 HOH A 26 327 327 HOH HOH . D 4 HOH A 27 328 328 HOH HOH . D 4 HOH A 28 329 329 HOH HOH . D 4 HOH A 29 330 330 HOH HOH . D 4 HOH A 30 331 331 HOH HOH . D 4 HOH A 31 332 332 HOH HOH . D 4 HOH A 32 333 333 HOH HOH . D 4 HOH A 33 334 334 HOH HOH . D 4 HOH A 34 335 335 HOH HOH . D 4 HOH A 35 336 336 HOH HOH . D 4 HOH A 36 337 337 HOH HOH . D 4 HOH A 37 338 338 HOH HOH . D 4 HOH A 38 339 339 HOH HOH . D 4 HOH A 39 340 340 HOH HOH . D 4 HOH A 40 341 341 HOH HOH . D 4 HOH A 41 342 342 HOH HOH . D 4 HOH A 42 343 343 HOH HOH . D 4 HOH A 43 344 344 HOH HOH . D 4 HOH A 44 345 345 HOH HOH . D 4 HOH A 45 346 346 HOH HOH . D 4 HOH A 46 347 347 HOH HOH . D 4 HOH A 47 348 348 HOH HOH . D 4 HOH A 48 349 349 HOH HOH . D 4 HOH A 49 350 350 HOH HOH . D 4 HOH A 50 351 351 HOH HOH . D 4 HOH A 51 352 352 HOH HOH . D 4 HOH A 52 353 353 HOH HOH . D 4 HOH A 53 354 354 HOH HOH . D 4 HOH A 54 355 355 HOH HOH . D 4 HOH A 55 356 356 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CD CD CD . A . B 2 30.832 47.716 76.823 0.65 16.33 ? CD CD 300 A 1 HETATM 2 CD CD CD . B . B 2 30.989 46.738 75.833 0.35 15.72 ? CD CD 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 2 #