data_3HKC # _model_server_result.job_id qyy87SDceYscAQzODPRVkA _model_server_result.datetime_utc '2024-11-14 06:55:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":600}' # _entry.id 3HKC # _exptl.entry_id 3HKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HKC _cell.length_a 329.24 _cell.length_b 329.24 _cell.length_c 53.87 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 219 n n PG O2G GTP sing 220 n n PG O3G GTP sing 221 n n PG O3B GTP sing 222 n n O2G HOG2 GTP sing 223 n n O3G HOG3 GTP sing 224 n n O3B PB GTP sing 225 n n PB O1B GTP doub 226 n n PB O2B GTP sing 227 n n PB O3A GTP sing 228 n n O2B HOB2 GTP sing 229 n n O3A PA GTP sing 230 n n PA O1A GTP doub 231 n n PA O2A GTP sing 232 n n PA O5' GTP sing 233 n n O2A HOA2 GTP sing 234 n n O5' C5' GTP sing 235 n n C5' C4' GTP sing 236 n n C5' H5' GTP sing 237 n n C5' "H5''" GTP sing 238 n n C4' O4' GTP sing 239 n n C4' C3' GTP sing 240 n n C4' H4' GTP sing 241 n n O4' C1' GTP sing 242 n n C3' O3' GTP sing 243 n n C3' C2' GTP sing 244 n n C3' H3' GTP sing 245 n n O3' HO3' GTP sing 246 n n C2' O2' GTP sing 247 n n C2' C1' GTP sing 248 n n C2' H2' GTP sing 249 n n O2' HO2' GTP sing 250 n n C1' N9 GTP sing 251 n n C1' H1' GTP sing 252 n n N9 C8 GTP sing 253 n y N9 C4 GTP sing 254 n y C8 N7 GTP doub 255 n y C8 H8 GTP sing 256 n n N7 C5 GTP sing 257 n y C5 C6 GTP sing 258 n n C5 C4 GTP doub 259 n y C6 O6 GTP doub 260 n n C6 N1 GTP sing 261 n n N1 C2 GTP sing 262 n n N1 HN1 GTP sing 263 n n C2 N2 GTP sing 264 n n C2 N3 GTP doub 265 n n N2 HN21 GTP sing 266 n n N2 HN22 GTP sing 267 n n N3 C4 GTP sing 268 n n # _atom_sites.entry_id 3HKC _atom_sites.fract_transf_matrix[1][1] 0.003037 _atom_sites.fract_transf_matrix[1][2] 0.001754 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 600 600 GDP GDP . I 5 MG B 1 601 601 MG MG . J 7 E70 B 1 700 700 E70 E70 . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 600 600 GDP GDP . N 7 E70 D 1 700 700 E70 E70 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . K 4 50.413 53.017 -0.426 1 50.54 ? PG GTP 600 C 1 HETATM 2 O O1G GTP . . . K 4 50.603 51.789 -1.232 1 49.49 ? O1G GTP 600 C 1 HETATM 3 O O2G GTP . . . K 4 50.323 52.668 1.067 1 49.8 ? O2G GTP 600 C 1 HETATM 4 O O3G GTP . . . K 4 49.081 53.698 -0.815 1 51.21 ? O3G GTP 600 C 1 HETATM 5 O O3B GTP . . . K 4 51.664 53.985 -0.732 1 49.83 ? O3B GTP 600 C 1 HETATM 6 P PB GTP . . . K 4 51.434 55.575 -0.707 1 49.16 ? PB GTP 600 C 1 HETATM 7 O O1B GTP . . . K 4 52.616 56.29 -0.238 1 49.86 ? O1B GTP 600 C 1 HETATM 8 O O2B GTP . . . K 4 50.207 55.901 0.149 1 48.04 ? O2B GTP 600 C 1 HETATM 9 O O3A GTP . . . K 4 51.255 56.021 -2.236 1 49.97 ? O3A GTP 600 C 1 HETATM 10 P PA GTP . . . K 4 52.324 55.637 -3.385 1 49.13 ? PA GTP 600 C 1 HETATM 11 O O1A GTP . . . K 4 51.747 54.555 -4.233 1 49.32 ? O1A GTP 600 C 1 HETATM 12 O O2A GTP . . . K 4 53.637 55.192 -2.733 1 49.65 ? O2A GTP 600 C 1 HETATM 13 O O5' GTP . . . K 4 52.508 56.95 -4.298 1 48.81 ? O5' GTP 600 C 1 HETATM 14 C C5' GTP . . . K 4 51.816 57.071 -5.521 1 48.9 ? C5' GTP 600 C 1 HETATM 15 C C4' GTP . . . K 4 52.713 57.886 -6.431 1 49.25 ? C4' GTP 600 C 1 HETATM 16 O O4' GTP . . . K 4 53.914 57.184 -6.49 1 48.32 ? O4' GTP 600 C 1 HETATM 17 C C3' GTP . . . K 4 52.22 57.99 -7.862 1 49.77 ? C3' GTP 600 C 1 HETATM 18 O O3' GTP . . . K 4 52.751 59.192 -8.362 1 50.08 ? O3' GTP 600 C 1 HETATM 19 C C2' GTP . . . K 4 52.846 56.818 -8.579 1 49.28 ? C2' GTP 600 C 1 HETATM 20 O O2' GTP . . . K 4 53.113 57.086 -9.936 1 48.71 ? O2' GTP 600 C 1 HETATM 21 C C1' GTP . . . K 4 54.125 56.692 -7.79 1 49.1 ? C1' GTP 600 C 1 HETATM 22 N N9 GTP . . . K 4 54.608 55.329 -7.652 1 49.59 ? N9 GTP 600 C 1 HETATM 23 C C8 GTP . . . K 4 53.999 54.261 -7.077 1 50.07 ? C8 GTP 600 C 1 HETATM 24 N N7 GTP . . . K 4 54.861 53.222 -7.176 1 50.83 ? N7 GTP 600 C 1 HETATM 25 C C5 GTP . . . K 4 56.013 53.616 -7.78 1 50.92 ? C5 GTP 600 C 1 HETATM 26 C C6 GTP . . . K 4 57.228 52.996 -8.134 1 50.79 ? C6 GTP 600 C 1 HETATM 27 O O6 GTP . . . K 4 57.452 51.813 -7.905 1 51.5 ? O6 GTP 600 C 1 HETATM 28 N N1 GTP . . . K 4 58.223 53.71 -8.77 1 49.72 ? N1 GTP 600 C 1 HETATM 29 C C2 GTP . . . K 4 58.027 55.048 -9.052 1 49.52 ? C2 GTP 600 C 1 HETATM 30 N N2 GTP . . . K 4 58.952 55.783 -9.66 1 49.44 ? N2 GTP 600 C 1 HETATM 31 N N3 GTP . . . K 4 56.839 55.644 -8.695 1 50.4 ? N3 GTP 600 C 1 HETATM 32 C C4 GTP . . . K 4 55.847 54.951 -8.078 1 50.5 ? C4 GTP 600 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #