data_3HKE
#
_model_server_result.job_id            q52Gp_aFJ8fpvLOL6WyFag 
_model_server_result.datetime_utc      '2024-11-15 19:26:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hke 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":600}' 
#
_entry.id    3HKE 
#
_exptl.entry_id    3HKE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3HKE 
_cell.length_a            326.71 
_cell.length_b            326.71 
_cell.length_c            54.12 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HKE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 239 B CYS 241 1_555 H CAQ T13 . B T13 1241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? 
covale ? covale2 D SG CYS 239 D CYS 241 1_555 N CAQ T13 . D T13 1241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     3HKE 
_atom_sites.fract_transf_matrix[1][1]    0.003061 
_atom_sites.fract_transf_matrix[1][2]    0.001767 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003534 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018477 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 600 600 GTP GTP . 
G 5 MG A 1 601 601 MG MG . 
H 6 T13 B 1 1241 241 T13 CTU . 
I 7 GDP B 1 600 600 GDP GDP . 
J 5 MG B 1 601 601 MG MG . 
K 6 T13 B 1 700 700 T13 T13 . 
L 4 GTP C 1 600 600 GTP GTP . 
M 5 MG C 1 601 601 MG MG . 
N 6 T13 D 1 1241 241 T13 CTU . 
O 7 GDP D 1 600 600 GDP GDP . 
P 6 T13 D 1 700 700 T13 T13 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . L 4 49.913 52.823 -0.595 1 66.51 ? PG GTP 600 C 1 
HETATM 2 O O1G GTP . . . L 4 49.981 51.603 -1.436 1 66.72 ? O1G GTP 600 C 1 
HETATM 3 O O2G GTP . . . L 4 49.861 52.432 0.885 1 66.2 ? O2G GTP 600 C 1 
HETATM 4 O O3G GTP . . . L 4 48.621 53.607 -0.948 1 65.89 ? O3G GTP 600 C 1 
HETATM 5 O O3B GTP . . . L 4 51.235 53.677 -0.913 1 65.19 ? O3B GTP 600 C 1 
HETATM 6 P PB GTP . . . L 4 51.106 55.274 -1.021 1 65.11 ? PB GTP 600 C 1 
HETATM 7 O O1B GTP . . . L 4 52.382 55.911 -0.731 1 65.29 ? O1B GTP 600 C 1 
HETATM 8 O O2B GTP . . . L 4 49.955 55.787 -0.15 1 64.67 ? O2B GTP 600 C 1 
HETATM 9 O O3A GTP . . . L 4 50.789 55.615 -2.546 1 65.76 ? O3A GTP 600 C 1 
HETATM 10 P PA GTP . . . L 4 51.798 55.233 -3.735 1 65.41 ? PA GTP 600 C 1 
HETATM 11 O O1A GTP . . . L 4 51.178 54.28 -4.7 1 65.04 ? O1A GTP 600 C 1 
HETATM 12 O O2A GTP . . . L 4 53.118 54.716 -3.151 1 65.73 ? O2A GTP 600 C 1 
HETATM 13 O O5' GTP . . . L 4 51.965 56.619 -4.501 1 65 ? O5' GTP 600 C 1 
HETATM 14 C C5' GTP . . . L 4 51.235 56.838 -5.682 1 65.13 ? C5' GTP 600 C 1 
HETATM 15 C C4' GTP . . . L 4 52.17 57.574 -6.623 1 65.55 ? C4' GTP 600 C 1 
HETATM 16 O O4' GTP . . . L 4 53.373 56.857 -6.649 1 64.89 ? O4' GTP 600 C 1 
HETATM 17 C C3' GTP . . . L 4 51.677 57.624 -8.056 1 65.68 ? C3' GTP 600 C 1 
HETATM 18 O O3' GTP . . . L 4 52.202 58.814 -8.589 1 66.32 ? O3' GTP 600 C 1 
HETATM 19 C C2' GTP . . . L 4 52.316 56.419 -8.708 1 64.72 ? C2' GTP 600 C 1 
HETATM 20 O O2' GTP . . . L 4 52.602 56.596 -10.072 1 63.62 ? O2' GTP 600 C 1 
HETATM 21 C C1' GTP . . . L 4 53.606 56.332 -7.933 1 64.73 ? C1' GTP 600 C 1 
HETATM 22 N N9 GTP . . . L 4 54.15 54.985 -7.774 1 65.21 ? N9 GTP 600 C 1 
HETATM 23 C C8 GTP . . . L 4 53.608 53.887 -7.154 1 65.8 ? C8 GTP 600 C 1 
HETATM 24 N N7 GTP . . . L 4 54.518 52.874 -7.238 1 66.02 ? N7 GTP 600 C 1 
HETATM 25 C C5 GTP . . . L 4 55.627 53.315 -7.886 1 65.33 ? C5 GTP 600 C 1 
HETATM 26 C C6 GTP . . . L 4 56.838 52.727 -8.247 1 64.59 ? C6 GTP 600 C 1 
HETATM 27 O O6 GTP . . . L 4 57.066 51.558 -7.971 1 64.83 ? O6 GTP 600 C 1 
HETATM 28 N N1 GTP . . . L 4 57.787 53.469 -8.922 1 64.17 ? N1 GTP 600 C 1 
HETATM 29 C C2 GTP . . . L 4 57.534 54.797 -9.232 1 64.32 ? C2 GTP 600 C 1 
HETATM 30 N N2 GTP . . . L 4 58.413 55.552 -9.875 1 64.12 ? N2 GTP 600 C 1 
HETATM 31 N N3 GTP . . . L 4 56.339 55.371 -8.873 1 65.07 ? N3 GTP 600 C 1 
HETATM 32 C C4 GTP . . . L 4 55.399 54.645 -8.219 1 65.48 ? C4 GTP 600 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#