data_3HKJ
#
_model_server_result.job_id            CFLsmJk8i1JJnwprRBm7ng 
_model_server_result.datetime_utc      '2025-07-30 17:00:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hkj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    3HKJ 
#
_exptl.entry_id    3HKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         98.78 
_cell.angle_beta          110.28 
_cell.angle_gamma         92.95 
_cell.entry_id            3HKJ 
_cell.length_a            53.14 
_cell.length_b            61.783 
_cell.length_c            67.834 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J,K 1 1 
D,E,F,H,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 D SG CYS 4 D CYS 1 1_555 E SG CYS 119 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 E SG CYS 28 E CYS 42 1_555 E SG CYS 44 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 E SG CYS 173 E CYS 168 1_555 E SG CYS 187 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 E SG CYS 201 E CYS 191 1_555 E SG CYS 231 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 G C1 NAG . B NAG 301 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale2 E ND2 ASN 53 E ASN 60 1_555 H C1 NAG . E NAG 301 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3HKJ 
_atom_sites.fract_transf_matrix[1][1]    0.018818 
_atom_sites.fract_transf_matrix[1][2]    0.000971 
_atom_sites.fract_transf_matrix[1][3]    0.007251 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016207 
_atom_sites.fract_transf_matrix[2][3]    0.003 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG B 1 301 301 NAG NAG . 
H 4 NAG E 1 301 301 NAG NAG . 
I 5 HOH A 1 1077 1077 HOH HOH . 
I 5 HOH A 2 1109 1109 HOH HOH . 
I 5 HOH A 3 1142 1142 HOH HOH . 
I 5 HOH A 4 1145 1145 HOH HOH . 
I 5 HOH A 5 1153 1153 HOH HOH . 
J 5 HOH B 1 1001 1001 HOH HOH . 
J 5 HOH B 2 1002 1002 HOH HOH . 
J 5 HOH B 3 1004 1004 HOH HOH . 
J 5 HOH B 4 1008 1008 HOH HOH . 
J 5 HOH B 5 1010 1010 HOH HOH . 
J 5 HOH B 6 1011 1011 HOH HOH . 
J 5 HOH B 7 1013 1013 HOH HOH . 
J 5 HOH B 8 1014 1014 HOH HOH . 
J 5 HOH B 9 1016 1016 HOH HOH . 
J 5 HOH B 10 1018 1018 HOH HOH . 
J 5 HOH B 11 1022 1022 HOH HOH . 
J 5 HOH B 12 1023 1023 HOH HOH . 
J 5 HOH B 13 1024 1024 HOH HOH . 
J 5 HOH B 14 1027 1027 HOH HOH . 
J 5 HOH B 15 1028 1028 HOH HOH . 
J 5 HOH B 16 1030 1030 HOH HOH . 
J 5 HOH B 17 1031 1031 HOH HOH . 
J 5 HOH B 18 1035 1035 HOH HOH . 
J 5 HOH B 19 1038 1038 HOH HOH . 
J 5 HOH B 20 1039 1039 HOH HOH . 
J 5 HOH B 21 1041 1041 HOH HOH . 
J 5 HOH B 22 1055 1055 HOH HOH . 
J 5 HOH B 23 1057 1057 HOH HOH . 
J 5 HOH B 24 1058 1058 HOH HOH . 
J 5 HOH B 25 1059 1059 HOH HOH . 
J 5 HOH B 26 1064 1064 HOH HOH . 
J 5 HOH B 27 1065 1065 HOH HOH . 
J 5 HOH B 28 1067 1067 HOH HOH . 
J 5 HOH B 29 1070 1070 HOH HOH . 
J 5 HOH B 30 1071 1071 HOH HOH . 
J 5 HOH B 31 1072 1072 HOH HOH . 
J 5 HOH B 32 1073 1073 HOH HOH . 
J 5 HOH B 33 1074 1074 HOH HOH . 
J 5 HOH B 34 1076 1076 HOH HOH . 
J 5 HOH B 35 1080 1080 HOH HOH . 
J 5 HOH B 36 1081 1081 HOH HOH . 
J 5 HOH B 37 1083 1083 HOH HOH . 
J 5 HOH B 38 1084 1084 HOH HOH . 
J 5 HOH B 39 1085 1085 HOH HOH . 
J 5 HOH B 40 1086 1086 HOH HOH . 
J 5 HOH B 41 1088 1088 HOH HOH . 
J 5 HOH B 42 1089 1089 HOH HOH . 
J 5 HOH B 43 1090 1090 HOH HOH . 
J 5 HOH B 44 1092 1092 HOH HOH . 
J 5 HOH B 45 1098 1098 HOH HOH . 
J 5 HOH B 46 1102 1102 HOH HOH . 
J 5 HOH B 47 1103 1103 HOH HOH . 
J 5 HOH B 48 1104 1104 HOH HOH . 
J 5 HOH B 49 1108 1108 HOH HOH . 
J 5 HOH B 50 1110 1110 HOH HOH . 
J 5 HOH B 51 1111 1111 HOH HOH . 
J 5 HOH B 52 1114 1114 HOH HOH . 
J 5 HOH B 53 1115 1115 HOH HOH . 
J 5 HOH B 54 1116 1116 HOH HOH . 
J 5 HOH B 55 1118 1118 HOH HOH . 
J 5 HOH B 56 1120 1120 HOH HOH . 
J 5 HOH B 57 1122 1122 HOH HOH . 
J 5 HOH B 58 1127 1127 HOH HOH . 
J 5 HOH B 59 1129 1129 HOH HOH . 
J 5 HOH B 60 1130 1130 HOH HOH . 
J 5 HOH B 61 1132 1132 HOH HOH . 
J 5 HOH B 62 1133 1133 HOH HOH . 
J 5 HOH B 63 1136 1136 HOH HOH . 
J 5 HOH B 64 1140 1140 HOH HOH . 
J 5 HOH B 65 1141 1141 HOH HOH . 
J 5 HOH B 66 1143 1143 HOH HOH . 
J 5 HOH B 67 1146 1146 HOH HOH . 
J 5 HOH B 68 1147 1147 HOH HOH . 
J 5 HOH B 69 1148 1148 HOH HOH . 
J 5 HOH B 70 1149 1149 HOH HOH . 
J 5 HOH B 71 1154 1154 HOH HOH . 
K 5 HOH C 1 1093 1093 HOH HOH . 
K 5 HOH C 2 1099 1099 HOH HOH . 
K 5 HOH C 3 1112 1112 HOH HOH . 
L 5 HOH D 1 1007 1007 HOH HOH . 
L 5 HOH D 2 1095 1095 HOH HOH . 
L 5 HOH D 3 1100 1100 HOH HOH . 
L 5 HOH D 4 1139 1139 HOH HOH . 
L 5 HOH D 5 1144 1144 HOH HOH . 
M 5 HOH E 1 1003 1003 HOH HOH . 
M 5 HOH E 2 1005 1005 HOH HOH . 
M 5 HOH E 3 1006 1006 HOH HOH . 
M 5 HOH E 4 1009 1009 HOH HOH . 
M 5 HOH E 5 1012 1012 HOH HOH . 
M 5 HOH E 6 1015 1015 HOH HOH . 
M 5 HOH E 7 1017 1017 HOH HOH . 
M 5 HOH E 8 1019 1019 HOH HOH . 
M 5 HOH E 9 1020 1020 HOH HOH . 
M 5 HOH E 10 1021 1021 HOH HOH . 
M 5 HOH E 11 1025 1025 HOH HOH . 
M 5 HOH E 12 1026 1026 HOH HOH . 
M 5 HOH E 13 1029 1029 HOH HOH . 
M 5 HOH E 14 1032 1032 HOH HOH . 
M 5 HOH E 15 1033 1033 HOH HOH . 
M 5 HOH E 16 1034 1034 HOH HOH . 
M 5 HOH E 17 1036 1036 HOH HOH . 
M 5 HOH E 18 1037 1037 HOH HOH . 
M 5 HOH E 19 1040 1040 HOH HOH . 
M 5 HOH E 20 1042 1042 HOH HOH . 
M 5 HOH E 21 1043 1043 HOH HOH . 
M 5 HOH E 22 1044 1044 HOH HOH . 
M 5 HOH E 23 1045 1045 HOH HOH . 
M 5 HOH E 24 1046 1046 HOH HOH . 
M 5 HOH E 25 1047 1047 HOH HOH . 
M 5 HOH E 26 1048 1048 HOH HOH . 
M 5 HOH E 27 1049 1049 HOH HOH . 
M 5 HOH E 28 1050 1050 HOH HOH . 
M 5 HOH E 29 1051 1051 HOH HOH . 
M 5 HOH E 30 1052 1052 HOH HOH . 
M 5 HOH E 31 1053 1053 HOH HOH . 
M 5 HOH E 32 1054 1054 HOH HOH . 
M 5 HOH E 33 1056 1056 HOH HOH . 
M 5 HOH E 34 1060 1060 HOH HOH . 
M 5 HOH E 35 1061 1061 HOH HOH . 
M 5 HOH E 36 1063 1063 HOH HOH . 
M 5 HOH E 37 1066 1066 HOH HOH . 
M 5 HOH E 38 1068 1068 HOH HOH . 
M 5 HOH E 39 1069 1069 HOH HOH . 
M 5 HOH E 40 1075 1075 HOH HOH . 
M 5 HOH E 41 1078 1078 HOH HOH . 
M 5 HOH E 42 1087 1087 HOH HOH . 
M 5 HOH E 43 1091 1091 HOH HOH . 
M 5 HOH E 44 1094 1094 HOH HOH . 
M 5 HOH E 45 1096 1096 HOH HOH . 
M 5 HOH E 46 1097 1097 HOH HOH . 
M 5 HOH E 47 1101 1101 HOH HOH . 
M 5 HOH E 48 1106 1106 HOH HOH . 
M 5 HOH E 49 1107 1107 HOH HOH . 
M 5 HOH E 50 1113 1113 HOH HOH . 
M 5 HOH E 51 1117 1117 HOH HOH . 
M 5 HOH E 52 1119 1119 HOH HOH . 
M 5 HOH E 53 1121 1121 HOH HOH . 
M 5 HOH E 54 1123 1123 HOH HOH . 
M 5 HOH E 55 1124 1124 HOH HOH . 
M 5 HOH E 56 1125 1125 HOH HOH . 
M 5 HOH E 57 1126 1126 HOH HOH . 
M 5 HOH E 58 1128 1128 HOH HOH . 
M 5 HOH E 59 1131 1131 HOH HOH . 
M 5 HOH E 60 1134 1134 HOH HOH . 
M 5 HOH E 61 1135 1135 HOH HOH . 
M 5 HOH E 62 1137 1137 HOH HOH . 
M 5 HOH E 63 1138 1138 HOH HOH . 
M 5 HOH E 64 1150 1150 HOH HOH . 
M 5 HOH E 65 1151 1151 HOH HOH . 
M 5 HOH E 66 1152 1152 HOH HOH . 
N 5 HOH F 1 1062 1062 HOH HOH . 
N 5 HOH F 2 1079 1079 HOH HOH . 
N 5 HOH F 3 1082 1082 HOH HOH . 
N 5 HOH F 4 1105 1105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 4 3.501 0.751 23.163 1 68.93 ? C1 NAG 301 B 1 
HETATM 2 C C2 NAG . . . G 4 4.583 -0.211 23.669 1 70.33 ? C2 NAG 301 B 1 
HETATM 3 C C3 NAG . . . G 4 4.029 -1.372 24.585 1 71.67 ? C3 NAG 301 B 1 
HETATM 4 C C4 NAG . . . G 4 2.89 -0.918 25.568 1 72.12 ? C4 NAG 301 B 1 
HETATM 5 C C5 NAG . . . G 4 1.938 0.083 24.797 1 71.52 ? C5 NAG 301 B 1 
HETATM 6 C C6 NAG . . . G 4 0.716 0.693 25.466 1 71.59 ? C6 NAG 301 B 1 
HETATM 7 C C7 NAG . . . G 4 6.626 -0.781 22.363 1 71.27 ? C7 NAG 301 B 1 
HETATM 8 C C8 NAG . . . G 4 7.182 -2.168 22.058 1 70.81 ? C8 NAG 301 B 1 
HETATM 9 N N2 NAG . . . G 4 5.278 -0.649 22.439 1 70.68 ? N2 NAG 301 B 1 
HETATM 10 O O3 NAG . . . G 4 5.11 -1.881 25.373 1 72.27 ? O3 NAG 301 B 1 
HETATM 11 O O4 NAG . . . G 4 2.197 -2.072 26.035 1 72.59 ? O4 NAG 301 B 1 
HETATM 12 O O5 NAG . . . G 4 2.772 1.189 24.344 1 70.29 ? O5 NAG 301 B 1 
HETATM 13 O O6 NAG . . . G 4 1.205 1.557 26.5 1 71.63 ? O6 NAG 301 B 1 
HETATM 14 O O7 NAG . . . G 4 7.385 0.158 22.518 1 71.55 ? O7 NAG 301 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           428 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#