data_3HKQ
#
_model_server_result.job_id            KgtewK5ASsl7UBvwagV_Kw 
_model_server_result.datetime_utc      '2024-11-27 02:44:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hkq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3HKQ 
#
_exptl.entry_id    3HKQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.48 
_cell.angle_gamma         90 
_cell.entry_id            3HKQ 
_cell.length_a            42.48 
_cell.length_b            41.7 
_cell.length_c            72.54 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc4 B ZN ZN . A ZN 261 1_555 C NAJ 1SD . A 1SD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     3HKQ 
_atom_sites.fract_transf_matrix[1][1]    0.02354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006079 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023981 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014238 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 261 261 ZN ZN . 
C 3 1SD A 1 300 300 1SD ML1 . 
D 4 GOL A 1 301 301 GOL GLL . 
E 5 HOH A 1 262 1 HOH TIP . 
E 5 HOH A 2 263 2 HOH TIP . 
E 5 HOH A 3 264 3 HOH TIP . 
E 5 HOH A 4 265 4 HOH TIP . 
E 5 HOH A 5 266 5 HOH TIP . 
E 5 HOH A 6 267 6 HOH TIP . 
E 5 HOH A 7 268 7 HOH TIP . 
E 5 HOH A 8 269 8 HOH TIP . 
E 5 HOH A 9 270 9 HOH TIP . 
E 5 HOH A 10 271 10 HOH TIP . 
E 5 HOH A 11 272 11 HOH TIP . 
E 5 HOH A 12 273 12 HOH TIP . 
E 5 HOH A 13 274 13 HOH TIP . 
E 5 HOH A 14 275 14 HOH TIP . 
E 5 HOH A 15 276 15 HOH TIP . 
E 5 HOH A 16 277 16 HOH TIP . 
E 5 HOH A 17 278 17 HOH TIP . 
E 5 HOH A 18 279 18 HOH TIP . 
E 5 HOH A 19 280 19 HOH TIP . 
E 5 HOH A 20 281 20 HOH TIP . 
E 5 HOH A 21 282 21 HOH TIP . 
E 5 HOH A 22 283 22 HOH TIP . 
E 5 HOH A 23 284 23 HOH TIP . 
E 5 HOH A 24 285 24 HOH TIP . 
E 5 HOH A 25 286 25 HOH TIP . 
E 5 HOH A 26 287 26 HOH TIP . 
E 5 HOH A 27 288 27 HOH TIP . 
E 5 HOH A 28 289 28 HOH TIP . 
E 5 HOH A 29 290 29 HOH TIP . 
E 5 HOH A 30 291 30 HOH TIP . 
E 5 HOH A 31 292 31 HOH TIP . 
E 5 HOH A 32 293 32 HOH TIP . 
E 5 HOH A 33 294 33 HOH TIP . 
E 5 HOH A 34 295 34 HOH TIP . 
E 5 HOH A 35 296 35 HOH TIP . 
E 5 HOH A 36 297 36 HOH TIP . 
E 5 HOH A 37 298 37 HOH TIP . 
E 5 HOH A 38 299 38 HOH TIP . 
E 5 HOH A 39 302 39 HOH TIP . 
E 5 HOH A 40 303 40 HOH TIP . 
E 5 HOH A 41 304 41 HOH TIP . 
E 5 HOH A 42 305 42 HOH TIP . 
E 5 HOH A 43 306 43 HOH TIP . 
E 5 HOH A 44 307 44 HOH TIP . 
E 5 HOH A 45 308 45 HOH TIP . 
E 5 HOH A 46 309 46 HOH TIP . 
E 5 HOH A 47 310 47 HOH TIP . 
E 5 HOH A 48 311 48 HOH TIP . 
E 5 HOH A 49 312 49 HOH TIP . 
E 5 HOH A 50 313 50 HOH TIP . 
E 5 HOH A 51 314 51 HOH TIP . 
E 5 HOH A 52 315 52 HOH TIP . 
E 5 HOH A 53 316 53 HOH TIP . 
E 5 HOH A 54 317 54 HOH TIP . 
E 5 HOH A 55 318 55 HOH TIP . 
E 5 HOH A 56 319 56 HOH TIP . 
E 5 HOH A 57 320 57 HOH TIP . 
E 5 HOH A 58 321 58 HOH TIP . 
E 5 HOH A 59 322 59 HOH TIP . 
E 5 HOH A 60 323 60 HOH TIP . 
E 5 HOH A 61 324 61 HOH TIP . 
E 5 HOH A 62 325 62 HOH TIP . 
E 5 HOH A 63 326 63 HOH TIP . 
E 5 HOH A 64 327 64 HOH TIP . 
E 5 HOH A 65 328 65 HOH TIP . 
E 5 HOH A 66 329 66 HOH TIP . 
E 5 HOH A 67 330 67 HOH TIP . 
E 5 HOH A 68 331 68 HOH TIP . 
E 5 HOH A 69 332 69 HOH TIP . 
E 5 HOH A 70 333 70 HOH TIP . 
E 5 HOH A 71 334 71 HOH TIP . 
E 5 HOH A 72 335 72 HOH TIP . 
E 5 HOH A 73 336 73 HOH TIP . 
E 5 HOH A 74 337 74 HOH TIP . 
E 5 HOH A 75 338 75 HOH TIP . 
E 5 HOH A 76 339 76 HOH TIP . 
E 5 HOH A 77 340 77 HOH TIP . 
E 5 HOH A 78 341 78 HOH TIP . 
E 5 HOH A 79 342 79 HOH TIP . 
E 5 HOH A 80 343 80 HOH TIP . 
E 5 HOH A 81 344 81 HOH TIP . 
E 5 HOH A 82 345 82 HOH TIP . 
E 5 HOH A 83 346 83 HOH TIP . 
E 5 HOH A 84 347 84 HOH TIP . 
E 5 HOH A 85 348 85 HOH TIP . 
E 5 HOH A 86 349 86 HOH TIP . 
E 5 HOH A 87 350 87 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 23.856 -9.732 12.952 1 38.58 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . D 4 24.56 -10.966 13.118 1 47.97 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . D 4 23.78 -9.002 14.295 1 39.14 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . D 4 25.103 -8.742 14.772 1 40.67 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . D 4 23.03 -9.869 15.308 1 37.31 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . D 4 22.99 -9.195 16.569 1 34.62 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#