data_3HKV # _model_server_result.job_id '_HL7IlpZbksh-rlYhYRGNg' _model_server_result.datetime_utc '2024-11-08 07:13:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5}' # _entry.id 3HKV # _exptl.entry_id 3HKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HKV _cell.length_a 97.38 _cell.length_b 97.38 _cell.length_c 121.16 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F NA NA . A NA 5 1_555 J O HOH . A HOH 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc2 F NA NA . A NA 5 1_555 J O HOH . A HOH 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc3 F NA NA . A NA 5 1_555 A O GLY 160 A GLY 967 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc4 F NA NA . A NA 5 1_555 A O LEU 165 A LEU 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc5 H NA NA . B NA 4 1_555 K O HOH . B HOH 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc6 H NA NA . B NA 4 1_555 K O HOH . B HOH 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc7 H NA NA . B NA 4 1_555 B O GLY 160 B GLY 967 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc8 H NA NA . B NA 4 1_555 B O HIS 163 B HIS 970 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc9 H NA NA . B NA 4 1_555 B O LEU 165 B LEU 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HKV _atom_sites.fract_transf_matrix[1][1] 0.010269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 1 1 PO4 PO4 . D 2 PO4 A 1 2 2 PO4 PO4 . E 2 PO4 A 1 3 3 PO4 PO4 . F 3 NA A 1 5 5 NA NA . G 4 3AB A 1 1025 1 3AB GAN . H 3 NA B 1 4 4 NA NA . I 4 3AB B 1 1 1 3AB GAN . J 5 HOH A 1 4 4 HOH HOH . J 5 HOH A 2 7 7 HOH HOH . J 5 HOH A 3 9 9 HOH HOH . J 5 HOH A 4 11 11 HOH HOH . J 5 HOH A 5 13 13 HOH HOH . J 5 HOH A 6 15 15 HOH HOH . J 5 HOH A 7 16 16 HOH HOH . J 5 HOH A 8 17 17 HOH HOH . J 5 HOH A 9 19 19 HOH HOH . J 5 HOH A 10 22 22 HOH HOH . J 5 HOH A 11 24 24 HOH HOH . J 5 HOH A 12 26 26 HOH HOH . J 5 HOH A 13 27 27 HOH HOH . J 5 HOH A 14 28 28 HOH HOH . J 5 HOH A 15 29 29 HOH HOH . J 5 HOH A 16 34 34 HOH HOH . J 5 HOH A 17 35 35 HOH HOH . J 5 HOH A 18 37 37 HOH HOH . J 5 HOH A 19 38 38 HOH HOH . J 5 HOH A 20 39 39 HOH HOH . J 5 HOH A 21 41 41 HOH HOH . J 5 HOH A 22 43 43 HOH HOH . J 5 HOH A 23 44 44 HOH HOH . J 5 HOH A 24 45 45 HOH HOH . J 5 HOH A 25 47 47 HOH HOH . J 5 HOH A 26 48 48 HOH HOH . J 5 HOH A 27 51 51 HOH HOH . J 5 HOH A 28 52 52 HOH HOH . J 5 HOH A 29 53 53 HOH HOH . J 5 HOH A 30 57 57 HOH HOH . J 5 HOH A 31 58 58 HOH HOH . J 5 HOH A 32 60 60 HOH HOH . J 5 HOH A 33 61 61 HOH HOH . J 5 HOH A 34 63 63 HOH HOH . J 5 HOH A 35 65 65 HOH HOH . J 5 HOH A 36 69 69 HOH HOH . J 5 HOH A 37 71 71 HOH HOH . J 5 HOH A 38 73 73 HOH HOH . J 5 HOH A 39 75 75 HOH HOH . J 5 HOH A 40 76 76 HOH HOH . J 5 HOH A 41 84 84 HOH HOH . J 5 HOH A 42 86 86 HOH HOH . J 5 HOH A 43 88 88 HOH HOH . J 5 HOH A 44 91 91 HOH HOH . J 5 HOH A 45 92 92 HOH HOH . J 5 HOH A 46 95 95 HOH HOH . J 5 HOH A 47 96 96 HOH HOH . J 5 HOH A 48 97 97 HOH HOH . J 5 HOH A 49 98 98 HOH HOH . J 5 HOH A 50 99 99 HOH HOH . J 5 HOH A 51 102 102 HOH HOH . J 5 HOH A 52 104 104 HOH HOH . J 5 HOH A 53 105 105 HOH HOH . J 5 HOH A 54 106 106 HOH HOH . J 5 HOH A 55 107 107 HOH HOH . J 5 HOH A 56 109 109 HOH HOH . J 5 HOH A 57 110 110 HOH HOH . J 5 HOH A 58 111 111 HOH HOH . J 5 HOH A 59 112 112 HOH HOH . J 5 HOH A 60 114 114 HOH HOH . J 5 HOH A 61 116 116 HOH HOH . J 5 HOH A 62 119 119 HOH HOH . J 5 HOH A 63 120 120 HOH HOH . J 5 HOH A 64 121 121 HOH HOH . J 5 HOH A 65 125 125 HOH HOH . J 5 HOH A 66 126 126 HOH HOH . J 5 HOH A 67 133 133 HOH HOH . J 5 HOH A 68 134 134 HOH HOH . J 5 HOH A 69 135 135 HOH HOH . J 5 HOH A 70 137 137 HOH HOH . J 5 HOH A 71 138 138 HOH HOH . J 5 HOH A 72 141 141 HOH HOH . J 5 HOH A 73 142 142 HOH HOH . J 5 HOH A 74 144 144 HOH HOH . J 5 HOH A 75 145 145 HOH HOH . J 5 HOH A 76 147 147 HOH HOH . J 5 HOH A 77 148 148 HOH HOH . J 5 HOH A 78 150 150 HOH HOH . J 5 HOH A 79 151 151 HOH HOH . J 5 HOH A 80 155 155 HOH HOH . J 5 HOH A 81 156 156 HOH HOH . J 5 HOH A 82 158 158 HOH HOH . J 5 HOH A 83 159 159 HOH HOH . J 5 HOH A 84 160 160 HOH HOH . J 5 HOH A 85 161 161 HOH HOH . J 5 HOH A 86 163 163 HOH HOH . J 5 HOH A 87 165 165 HOH HOH . J 5 HOH A 88 167 167 HOH HOH . J 5 HOH A 89 169 169 HOH HOH . J 5 HOH A 90 170 170 HOH HOH . J 5 HOH A 91 171 171 HOH HOH . J 5 HOH A 92 172 172 HOH HOH . J 5 HOH A 93 176 176 HOH HOH . J 5 HOH A 94 181 181 HOH HOH . J 5 HOH A 95 1026 1 HOH HOH . J 5 HOH A 96 1027 2 HOH HOH . J 5 HOH A 97 1028 5 HOH HOH . K 5 HOH B 1 3 3 HOH HOH . K 5 HOH B 2 6 6 HOH HOH . K 5 HOH B 3 8 8 HOH HOH . K 5 HOH B 4 10 10 HOH HOH . K 5 HOH B 5 12 12 HOH HOH . K 5 HOH B 6 14 14 HOH HOH . K 5 HOH B 7 18 18 HOH HOH . K 5 HOH B 8 20 20 HOH HOH . K 5 HOH B 9 21 21 HOH HOH . K 5 HOH B 10 23 23 HOH HOH . K 5 HOH B 11 25 25 HOH HOH . K 5 HOH B 12 30 30 HOH HOH . K 5 HOH B 13 31 31 HOH HOH . K 5 HOH B 14 32 32 HOH HOH . K 5 HOH B 15 33 33 HOH HOH . K 5 HOH B 16 36 36 HOH HOH . K 5 HOH B 17 40 40 HOH HOH . K 5 HOH B 18 42 42 HOH HOH . K 5 HOH B 19 46 46 HOH HOH . K 5 HOH B 20 49 49 HOH HOH . K 5 HOH B 21 50 50 HOH HOH . K 5 HOH B 22 54 54 HOH HOH . K 5 HOH B 23 55 55 HOH HOH . K 5 HOH B 24 56 56 HOH HOH . K 5 HOH B 25 59 59 HOH HOH . K 5 HOH B 26 62 62 HOH HOH . K 5 HOH B 27 64 64 HOH HOH . K 5 HOH B 28 66 66 HOH HOH . K 5 HOH B 29 67 67 HOH HOH . K 5 HOH B 30 68 68 HOH HOH . K 5 HOH B 31 70 70 HOH HOH . K 5 HOH B 32 72 72 HOH HOH . K 5 HOH B 33 74 74 HOH HOH . K 5 HOH B 34 77 77 HOH HOH . K 5 HOH B 35 78 78 HOH HOH . K 5 HOH B 36 79 79 HOH HOH . K 5 HOH B 37 80 80 HOH HOH . K 5 HOH B 38 81 81 HOH HOH . K 5 HOH B 39 82 82 HOH HOH . K 5 HOH B 40 83 83 HOH HOH . K 5 HOH B 41 85 85 HOH HOH . K 5 HOH B 42 87 87 HOH HOH . K 5 HOH B 43 89 89 HOH HOH . K 5 HOH B 44 90 90 HOH HOH . K 5 HOH B 45 93 93 HOH HOH . K 5 HOH B 46 94 94 HOH HOH . K 5 HOH B 47 100 100 HOH HOH . K 5 HOH B 48 101 101 HOH HOH . K 5 HOH B 49 103 103 HOH HOH . K 5 HOH B 50 108 108 HOH HOH . K 5 HOH B 51 113 113 HOH HOH . K 5 HOH B 52 115 115 HOH HOH . K 5 HOH B 53 117 117 HOH HOH . K 5 HOH B 54 118 118 HOH HOH . K 5 HOH B 55 122 122 HOH HOH . K 5 HOH B 56 123 123 HOH HOH . K 5 HOH B 57 124 124 HOH HOH . K 5 HOH B 58 127 127 HOH HOH . K 5 HOH B 59 128 128 HOH HOH . K 5 HOH B 60 129 129 HOH HOH . K 5 HOH B 61 130 130 HOH HOH . K 5 HOH B 62 131 131 HOH HOH . K 5 HOH B 63 132 132 HOH HOH . K 5 HOH B 64 136 136 HOH HOH . K 5 HOH B 65 139 139 HOH HOH . K 5 HOH B 66 140 140 HOH HOH . K 5 HOH B 67 143 143 HOH HOH . K 5 HOH B 68 146 146 HOH HOH . K 5 HOH B 69 149 149 HOH HOH . K 5 HOH B 70 152 152 HOH HOH . K 5 HOH B 71 153 153 HOH HOH . K 5 HOH B 72 154 154 HOH HOH . K 5 HOH B 73 157 157 HOH HOH . K 5 HOH B 74 162 162 HOH HOH . K 5 HOH B 75 164 164 HOH HOH . K 5 HOH B 76 166 166 HOH HOH . K 5 HOH B 77 168 168 HOH HOH . K 5 HOH B 78 173 173 HOH HOH . K 5 HOH B 79 174 174 HOH HOH . K 5 HOH B 80 175 175 HOH HOH . K 5 HOH B 81 177 177 HOH HOH . K 5 HOH B 82 178 178 HOH HOH . K 5 HOH B 83 179 179 HOH HOH . K 5 HOH B 84 180 180 HOH HOH . K 5 HOH B 85 182 182 HOH HOH . K 5 HOH B 86 183 183 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 29.212 _atom_site.Cartn_y 42.77 _atom_site.Cartn_z 51.268 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 5 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #