data_3HM1 # _model_server_result.job_id ls6ntUNPeNajalxTXQZbOQ _model_server_result.datetime_utc '2025-08-06 01:11:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3HM1 # _exptl.entry_id 3HM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.366 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.18 _cell.angle_gamma 90 _cell.entry_id 3HM1 _cell.length_a 56.267 _cell.length_b 82.666 _cell.length_c 58.989 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CME 84 A CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CME 84 A CME 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C LYS 119 A LYS 416 1_555 A N CME 120 A CME 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CME 120 A CME 417 1_555 A N VAL 121 A VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C LYS 232 A LYS 529 1_555 A N CME 233 A CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C CME 233 A CME 530 1_555 A N LYS 234 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C GLU 83 B GLU 380 1_555 B N CME 84 B CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 B C CME 84 B CME 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C LYS 119 B LYS 416 1_555 B N CME 120 B CME 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C CME 120 B CME 417 1_555 B N VAL 121 B VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C LYS 232 B LYS 529 1_555 B N CME 233 B CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C CME 233 B CME 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C18 H22 O2' _chem_comp.formula_weight 270.366 _chem_comp.id J3Z _chem_comp.mon_nstd_flag . _chem_comp.name (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Estrone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 J3Z sing 194 n n C8 C7 J3Z sing 195 n n O1 C7 J3Z doub 196 n n C9 C10 J3Z sing 197 n n C7 C5 J3Z sing 198 n n C6 C5 J3Z sing 199 n n C5 C10 J3Z sing 200 n n C5 C4 J3Z sing 201 n n C10 C12 J3Z sing 202 n n C14 C12 J3Z sing 203 n n C14 C15 J3Z sing 204 n n C12 C2 J3Z sing 205 n n C4 C3 J3Z sing 206 n n C15 C16 J3Z sing 207 n n C2 C3 J3Z sing 208 n n C2 C21 J3Z sing 209 n n C16 C21 J3Z doub 210 n y C16 C17 J3Z sing 211 n y C21 C20 J3Z sing 212 n y C17 C18 J3Z doub 213 n y C20 C19 J3Z doub 214 n y C18 C19 J3Z sing 215 n y C18 O3 J3Z sing 216 n n C2 H2 J3Z sing 217 n n C4 H14 J3Z sing 218 n n C4 H24 J3Z sing 219 n n C6 H16 J3Z sing 220 n n C6 H26 J3Z sing 221 n n C6 H36 J3Z sing 222 n n O3 HO3 J3Z sing 223 n n C8 H18 J3Z sing 224 n n C8 H28 J3Z sing 225 n n C9 H19 J3Z sing 226 n n C9 H29 J3Z sing 227 n n C10 H10 J3Z sing 228 n n C12 H12 J3Z sing 229 n n C3 H13 J3Z sing 230 n n C3 H23 J3Z sing 231 n n C14 H114 J3Z sing 232 n n C14 H214 J3Z sing 233 n n C15 H115 J3Z sing 234 n n C15 H215 J3Z sing 235 n n C17 H17 J3Z sing 236 n n C19 H19A J3Z sing 237 n n C20 H20 J3Z sing 238 n n # _atom_sites.entry_id 3HM1 _atom_sites.fract_transf_matrix[1][1] 0.017772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006182 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 J3Z A 1 2 2 J3Z J3Z . F 3 J3Z B 1 1 1 J3Z J3Z . G 4 HOH A 1 4 4 HOH HOH . G 4 HOH A 2 5 5 HOH HOH . G 4 HOH A 3 6 6 HOH HOH . G 4 HOH A 4 10 10 HOH HOH . G 4 HOH A 5 11 11 HOH HOH . G 4 HOH A 6 12 12 HOH HOH . G 4 HOH A 7 13 13 HOH HOH . G 4 HOH A 8 14 14 HOH HOH . H 4 HOH B 1 9 9 HOH HOH . H 4 HOH B 2 697 697 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 J3Z . . . F 3 -3.533 -5.247 22.021 1 52.79 ? C2 J3Z 1 B 1 HETATM 2 C C4 J3Z . . . F 3 -5.787 -4.733 20.867 1 56.84 ? C4 J3Z 1 B 1 HETATM 3 C C5 J3Z . . . F 3 -4.976 -4.405 19.625 1 56.58 ? C5 J3Z 1 B 1 HETATM 4 C C6 J3Z . . . F 3 -4.605 -2.927 19.579 1 59.07 ? C6 J3Z 1 B 1 HETATM 5 O O1 J3Z . . . F 3 -6.759 -4.766 18.005 1 61.73 ? O1 J3Z 1 B 1 HETATM 6 O O3 J3Z . . . F 3 -0.443 -4.416 26.7 1 41.22 ? O3 J3Z 1 B 1 HETATM 7 C C7 J3Z . . . F 3 -5.566 -4.83 18.305 1 60.51 ? C7 J3Z 1 B 1 HETATM 8 C C8 J3Z . . . F 3 -4.492 -5.253 17.333 1 53.11 ? C8 J3Z 1 B 1 HETATM 9 C C9 J3Z . . . F 3 -3.237 -5.318 18.212 1 51.21 ? C9 J3Z 1 B 1 HETATM 10 C C10 J3Z . . . F 3 -3.752 -5.286 19.645 1 45.59 ? C10 J3Z 1 B 1 HETATM 11 C C12 J3Z . . . F 3 -2.807 -4.84 20.75 1 44.35 ? C12 J3Z 1 B 1 HETATM 12 C C3 J3Z . . . F 3 -4.908 -4.556 22.111 1 63.31 ? C3 J3Z 1 B 1 HETATM 13 C C14 J3Z . . . F 3 -1.45 -5.517 20.646 1 47.41 ? C14 J3Z 1 B 1 HETATM 14 C C15 J3Z . . . F 3 -0.568 -5.397 21.889 1 44.67 ? C15 J3Z 1 B 1 HETATM 15 C C16 J3Z . . . F 3 -1.313 -5.102 23.178 1 49.74 ? C16 J3Z 1 B 1 HETATM 16 C C21 J3Z . . . F 3 -2.7 -5.023 23.236 1 51.78 ? C21 J3Z 1 B 1 HETATM 17 C C17 J3Z . . . F 3 -0.551 -4.89 24.342 1 48.81 ? C17 J3Z 1 B 1 HETATM 18 C C18 J3Z . . . F 3 -1.177 -4.619 25.555 1 55.52 ? C18 J3Z 1 B 1 HETATM 19 C C19 J3Z . . . F 3 -2.57 -4.543 25.606 1 50.07 ? C19 J3Z 1 B 1 HETATM 20 C C20 J3Z . . . F 3 -3.326 -4.747 24.456 1 56.92 ? C20 J3Z 1 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #