data_3HM3
#
_model_server_result.job_id            6a_fjs7a9WwOt2O30QqB1A 
_model_server_result.datetime_utc      '2024-11-23 00:00:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hm3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":100}' 
#
_entry.id    3HM3 
#
_exptl.entry_id    3HM3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HM3 
_cell.length_a            105.882 
_cell.length_b            105.882 
_cell.length_c            105.882 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HM3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,K 1 1 
B,G,L 2 1 
C,H,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 63 A LYS 63 1_555 B C GLY 76 B GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B NZ LYS 63 B LYS 63 1_555 C C GLY 76 C GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 C NZ LYS 63 C LYS 63 1_555 D C GLY 76 D GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 F ZN ZN . A ZN 700 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc2 A OE1 GLU 64 A GLU 64 1_555 E ZN ZN . A ZN 600 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc3 A OE2 GLU 64 A GLU 64 1_555 E ZN ZN . A ZN 600 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.823 ? 
metalc ? metalc4 K O HOH . A HOH 88 1_555 F ZN ZN . A ZN 700 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc5 B OD1 ASP 21 B ASP 21 1_555 G ZN ZN . B ZN 400 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc6 L O HOH . B HOH 91 1_555 G ZN ZN . B ZN 400 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc7 C OD2 ASP 21 C ASP 21 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc8 C OD2 ASP 21 C ASP 21 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc9 C OE1 GLU 64 C GLU 64 1_555 H ZN ZN . C ZN 100 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc10 M O HOH . C HOH 85 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc11 D OD1 ASP 21 D ASP 21 1_555 J ZN ZN . D ZN 900 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc12 N O HOH . D HOH 89 1_555 J ZN ZN . D ZN 900 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.774 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3HM3 
_atom_sites.fract_transf_matrix[1][1]    0.009444 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 600 600 ZN ZN . 
F 2 ZN A 1 700 700 ZN ZN . 
G 2 ZN B 1 400 400 ZN ZN . 
H 2 ZN C 1 100 100 ZN ZN . 
I 2 ZN C 1 200 200 ZN ZN . 
J 2 ZN D 1 900 900 ZN ZN . 
K 3 HOH A 1 77 77 HOH HOH . 
K 3 HOH A 2 78 2 HOH HOH . 
K 3 HOH A 3 79 3 HOH HOH . 
K 3 HOH A 4 80 11 HOH HOH . 
K 3 HOH A 5 81 14 HOH HOH . 
K 3 HOH A 6 82 82 HOH HOH . 
K 3 HOH A 7 83 16 HOH HOH . 
K 3 HOH A 8 84 84 HOH HOH . 
K 3 HOH A 9 85 20 HOH HOH . 
K 3 HOH A 10 86 21 HOH HOH . 
K 3 HOH A 11 87 87 HOH HOH . 
K 3 HOH A 12 88 22 HOH HOH . 
K 3 HOH A 13 89 26 HOH HOH . 
K 3 HOH A 14 90 28 HOH HOH . 
K 3 HOH A 15 91 29 HOH HOH . 
K 3 HOH A 16 92 92 HOH HOH . 
K 3 HOH A 17 93 93 HOH HOH . 
K 3 HOH A 18 94 33 HOH HOH . 
K 3 HOH A 19 96 38 HOH HOH . 
K 3 HOH A 20 97 41 HOH HOH . 
K 3 HOH A 21 98 98 HOH HOH . 
K 3 HOH A 22 99 45 HOH HOH . 
K 3 HOH A 23 100 48 HOH HOH . 
K 3 HOH A 24 101 52 HOH HOH . 
K 3 HOH A 25 102 53 HOH HOH . 
K 3 HOH A 26 103 55 HOH HOH . 
K 3 HOH A 27 104 63 HOH HOH . 
K 3 HOH A 28 105 68 HOH HOH . 
K 3 HOH A 29 106 106 HOH HOH . 
K 3 HOH A 30 107 71 HOH HOH . 
K 3 HOH A 31 108 72 HOH HOH . 
K 3 HOH A 32 109 74 HOH HOH . 
K 3 HOH A 33 112 112 HOH HOH . 
K 3 HOH A 34 114 114 HOH HOH . 
K 3 HOH A 35 115 115 HOH HOH . 
K 3 HOH A 36 120 120 HOH HOH . 
K 3 HOH A 37 126 126 HOH HOH . 
K 3 HOH A 38 129 129 HOH HOH . 
K 3 HOH A 39 136 136 HOH HOH . 
K 3 HOH A 40 138 138 HOH HOH . 
K 3 HOH A 41 144 144 HOH HOH . 
K 3 HOH A 42 146 146 HOH HOH . 
K 3 HOH A 43 155 155 HOH HOH . 
K 3 HOH A 44 162 162 HOH HOH . 
K 3 HOH A 45 175 175 HOH HOH . 
K 3 HOH A 46 177 177 HOH HOH . 
K 3 HOH A 47 181 181 HOH HOH . 
K 3 HOH A 48 191 191 HOH HOH . 
K 3 HOH A 49 195 195 HOH HOH . 
K 3 HOH A 50 200 200 HOH HOH . 
L 3 HOH B 1 77 4 HOH HOH . 
L 3 HOH B 2 78 5 HOH HOH . 
L 3 HOH B 3 79 9 HOH HOH . 
L 3 HOH B 4 80 19 HOH HOH . 
L 3 HOH B 5 81 81 HOH HOH . 
L 3 HOH B 6 82 30 HOH HOH . 
L 3 HOH B 7 83 83 HOH HOH . 
L 3 HOH B 8 84 34 HOH HOH . 
L 3 HOH B 9 85 37 HOH HOH . 
L 3 HOH B 10 86 86 HOH HOH . 
L 3 HOH B 11 87 40 HOH HOH . 
L 3 HOH B 12 88 49 HOH HOH . 
L 3 HOH B 13 89 50 HOH HOH . 
L 3 HOH B 14 90 54 HOH HOH . 
L 3 HOH B 15 91 59 HOH HOH . 
L 3 HOH B 16 92 62 HOH HOH . 
L 3 HOH B 17 93 66 HOH HOH . 
L 3 HOH B 18 94 76 HOH HOH . 
L 3 HOH B 19 95 95 HOH HOH . 
L 3 HOH B 20 100 100 HOH HOH . 
L 3 HOH B 21 103 103 HOH HOH . 
L 3 HOH B 22 107 107 HOH HOH . 
L 3 HOH B 23 111 111 HOH HOH . 
L 3 HOH B 24 119 119 HOH HOH . 
L 3 HOH B 25 123 123 HOH HOH . 
L 3 HOH B 26 134 134 HOH HOH . 
L 3 HOH B 27 135 135 HOH HOH . 
L 3 HOH B 28 140 140 HOH HOH . 
L 3 HOH B 29 147 147 HOH HOH . 
L 3 HOH B 30 151 151 HOH HOH . 
L 3 HOH B 31 152 152 HOH HOH . 
L 3 HOH B 32 157 157 HOH HOH . 
L 3 HOH B 33 159 159 HOH HOH . 
L 3 HOH B 34 160 160 HOH HOH . 
L 3 HOH B 35 161 161 HOH HOH . 
L 3 HOH B 36 164 164 HOH HOH . 
L 3 HOH B 37 165 165 HOH HOH . 
L 3 HOH B 38 168 168 HOH HOH . 
L 3 HOH B 39 169 169 HOH HOH . 
L 3 HOH B 40 171 171 HOH HOH . 
L 3 HOH B 41 172 172 HOH HOH . 
L 3 HOH B 42 179 179 HOH HOH . 
L 3 HOH B 43 182 182 HOH HOH . 
L 3 HOH B 44 186 186 HOH HOH . 
L 3 HOH B 45 187 187 HOH HOH . 
L 3 HOH B 46 194 194 HOH HOH . 
L 3 HOH B 47 197 197 HOH HOH . 
L 3 HOH B 48 205 205 HOH HOH . 
M 3 HOH C 1 77 7 HOH HOH . 
M 3 HOH C 2 78 78 HOH HOH . 
M 3 HOH C 3 79 79 HOH HOH . 
M 3 HOH C 4 80 80 HOH HOH . 
M 3 HOH C 5 81 10 HOH HOH . 
M 3 HOH C 6 82 13 HOH HOH . 
M 3 HOH C 7 83 15 HOH HOH . 
M 3 HOH C 8 84 17 HOH HOH . 
M 3 HOH C 9 85 85 HOH HOH . 
M 3 HOH C 10 86 18 HOH HOH . 
M 3 HOH C 11 87 27 HOH HOH . 
M 3 HOH C 12 88 88 HOH HOH . 
M 3 HOH C 13 89 31 HOH HOH . 
M 3 HOH C 14 90 39 HOH HOH . 
M 3 HOH C 15 91 91 HOH HOH . 
M 3 HOH C 16 92 47 HOH HOH . 
M 3 HOH C 17 93 60 HOH HOH . 
M 3 HOH C 18 94 94 HOH HOH . 
M 3 HOH C 19 95 61 HOH HOH . 
M 3 HOH C 20 96 96 HOH HOH . 
M 3 HOH C 21 97 97 HOH HOH . 
M 3 HOH C 22 98 64 HOH HOH . 
M 3 HOH C 23 99 99 HOH HOH . 
M 3 HOH C 24 101 65 HOH HOH . 
M 3 HOH C 25 102 102 HOH HOH . 
M 3 HOH C 26 103 67 HOH HOH . 
M 3 HOH C 27 104 70 HOH HOH . 
M 3 HOH C 28 105 75 HOH HOH . 
M 3 HOH C 29 108 108 HOH HOH . 
M 3 HOH C 30 109 109 HOH HOH . 
M 3 HOH C 31 110 110 HOH HOH . 
M 3 HOH C 32 117 117 HOH HOH . 
M 3 HOH C 33 118 118 HOH HOH . 
M 3 HOH C 34 121 121 HOH HOH . 
M 3 HOH C 35 124 124 HOH HOH . 
M 3 HOH C 36 130 130 HOH HOH . 
M 3 HOH C 37 131 131 HOH HOH . 
M 3 HOH C 38 132 132 HOH HOH . 
M 3 HOH C 39 133 133 HOH HOH . 
M 3 HOH C 40 139 139 HOH HOH . 
M 3 HOH C 41 143 143 HOH HOH . 
M 3 HOH C 42 145 145 HOH HOH . 
M 3 HOH C 43 154 154 HOH HOH . 
M 3 HOH C 44 156 156 HOH HOH . 
M 3 HOH C 45 158 158 HOH HOH . 
M 3 HOH C 46 167 167 HOH HOH . 
M 3 HOH C 47 174 174 HOH HOH . 
M 3 HOH C 48 178 178 HOH HOH . 
M 3 HOH C 49 183 183 HOH HOH . 
M 3 HOH C 50 184 184 HOH HOH . 
M 3 HOH C 51 185 185 HOH HOH . 
M 3 HOH C 52 189 189 HOH HOH . 
M 3 HOH C 53 190 190 HOH HOH . 
M 3 HOH C 54 192 192 HOH HOH . 
M 3 HOH C 55 196 196 HOH HOH . 
M 3 HOH C 56 198 198 HOH HOH . 
M 3 HOH C 57 201 201 HOH HOH . 
M 3 HOH C 58 202 202 HOH HOH . 
M 3 HOH C 59 204 204 HOH HOH . 
M 3 HOH C 60 206 206 HOH HOH . 
M 3 HOH C 61 207 207 HOH HOH . 
M 3 HOH C 62 208 208 HOH HOH . 
N 3 HOH D 1 77 1 HOH HOH . 
N 3 HOH D 2 78 6 HOH HOH . 
N 3 HOH D 3 79 8 HOH HOH . 
N 3 HOH D 4 80 12 HOH HOH . 
N 3 HOH D 5 81 23 HOH HOH . 
N 3 HOH D 6 82 24 HOH HOH . 
N 3 HOH D 7 83 25 HOH HOH . 
N 3 HOH D 8 84 32 HOH HOH . 
N 3 HOH D 9 85 35 HOH HOH . 
N 3 HOH D 10 86 42 HOH HOH . 
N 3 HOH D 11 87 43 HOH HOH . 
N 3 HOH D 12 88 44 HOH HOH . 
N 3 HOH D 13 89 89 HOH HOH . 
N 3 HOH D 14 90 90 HOH HOH . 
N 3 HOH D 15 91 46 HOH HOH . 
N 3 HOH D 16 92 51 HOH HOH . 
N 3 HOH D 17 93 56 HOH HOH . 
N 3 HOH D 18 94 57 HOH HOH . 
N 3 HOH D 19 95 36 HOH HOH . 
N 3 HOH D 20 96 69 HOH HOH . 
N 3 HOH D 21 97 73 HOH HOH . 
N 3 HOH D 22 98 58 HOH HOH . 
N 3 HOH D 23 101 101 HOH HOH . 
N 3 HOH D 24 104 104 HOH HOH . 
N 3 HOH D 25 105 105 HOH HOH . 
N 3 HOH D 26 113 113 HOH HOH . 
N 3 HOH D 27 116 116 HOH HOH . 
N 3 HOH D 28 122 122 HOH HOH . 
N 3 HOH D 29 125 125 HOH HOH . 
N 3 HOH D 30 127 127 HOH HOH . 
N 3 HOH D 31 128 128 HOH HOH . 
N 3 HOH D 32 137 137 HOH HOH . 
N 3 HOH D 33 141 141 HOH HOH . 
N 3 HOH D 34 142 142 HOH HOH . 
N 3 HOH D 35 148 148 HOH HOH . 
N 3 HOH D 36 149 149 HOH HOH . 
N 3 HOH D 37 150 150 HOH HOH . 
N 3 HOH D 38 153 153 HOH HOH . 
N 3 HOH D 39 163 163 HOH HOH . 
N 3 HOH D 40 166 166 HOH HOH . 
N 3 HOH D 41 170 170 HOH HOH . 
N 3 HOH D 42 173 173 HOH HOH . 
N 3 HOH D 43 176 176 HOH HOH . 
N 3 HOH D 44 180 180 HOH HOH . 
N 3 HOH D 45 188 188 HOH HOH . 
N 3 HOH D 46 193 193 HOH HOH . 
N 3 HOH D 47 199 199 HOH HOH . 
N 3 HOH D 48 203 203 HOH HOH . 
N 3 HOH D 49 209 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 ZN ZN ZN . A . H 2 7.542 35.623 -16.06 0.5 43.69 ? ZN ZN 100 C 1 
HETATM 2 ZN ZN ZN . B . H 2 7.507 35.313 -18.654 0.5 73.53 ? ZN ZN 100 C 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           2 
#