data_3HM8
#
_model_server_result.job_id            5-XZ-JJmbw9o1hudznxRCA 
_model_server_result.datetime_utc      '2024-12-26 21:15:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hm8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1002}' 
#
_entry.id    3HM8 
#
_exptl.entry_id    3HM8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HM8 
_cell.length_a            83.904 
_cell.length_b            83.904 
_cell.length_c            323.327 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HM8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                BG6 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     BETA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-beta-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BG6 sing 70 n n 
C1 O1 BG6 sing 71 n n 
C1 O5 BG6 sing 72 n n 
C1 H1 BG6 sing 73 n n 
C2 C3 BG6 sing 74 n n 
C2 O2 BG6 sing 75 n n 
C2 H2 BG6 sing 76 n n 
O1 HO1 BG6 sing 77 n n 
O5 C5 BG6 sing 78 n n 
C3 C4 BG6 sing 79 n n 
C3 O3 BG6 sing 80 n n 
C3 H3 BG6 sing 81 n n 
O2 HO2 BG6 sing 82 n n 
C4 C5 BG6 sing 83 n n 
C4 O4 BG6 sing 84 n n 
C4 H4 BG6 sing 85 n n 
O3 HO3 BG6 sing 86 n n 
C5 C6 BG6 sing 87 n n 
C5 H5 BG6 sing 88 n n 
O4 HO4 BG6 sing 89 n n 
C6 O6 BG6 sing 90 n n 
C6 H61 BG6 sing 91 n n 
C6 H62 BG6 sing 92 n n 
O6 P BG6 sing 93 n n 
P O1P BG6 sing 94 n n 
P O2P BG6 sing 95 n n 
P O3P BG6 doub 96 n n 
O1P H1O1 BG6 sing 97 n n 
O2P H2O2 BG6 sing 98 n n 
#
_pdbx_chem_comp_identifier.comp_id            BG6 
_pdbx_chem_comp_identifier.identifier         b-D-Glcp6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3HM8 
_atom_sites.fract_transf_matrix[1][1]    0.011918 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003093 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GLC A 1 1001 1001 GLC GLC . 
F 3 BG6 A 1 1002 1002 BG6 BG6 . 
G 2 GLC B 1 1001 1001 GLC GLC . 
H 3 BG6 B 1 1002 1002 BG6 BG6 . 
I 2 GLC C 1 1001 1001 GLC GLC . 
J 3 BG6 C 1 1002 1002 BG6 BG6 . 
K 2 GLC D 1 1001 1001 GLC GLC . 
L 3 BG6 D 1 1002 1002 BG6 BG6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BG6 . . . F 3 18.075 5.657 -27.353 1 63.69 ? C1 BG6 1002 A 1 
HETATM 2 C C2 BG6 . . . F 3 16.955 6.537 -26.773 1 63.46 ? C2 BG6 1002 A 1 
HETATM 3 O O1 BG6 . . . F 3 18.727 6.351 -28.442 1 65.52 ? O1 BG6 1002 A 1 
HETATM 4 O O5 BG6 . . . F 3 17.542 4.341 -27.764 1 61.68 ? O5 BG6 1002 A 1 
HETATM 5 C C3 BG6 . . . F 3 16.352 5.863 -25.55 1 62.58 ? C3 BG6 1002 A 1 
HETATM 6 O O2 BG6 . . . F 3 17.455 7.834 -26.418 1 65.11 ? O2 BG6 1002 A 1 
HETATM 7 C C4 BG6 . . . F 3 15.837 4.443 -25.938 1 60.72 ? C4 BG6 1002 A 1 
HETATM 8 O O3 BG6 . . . F 3 15.276 6.659 -25.003 1 63.11 ? O3 BG6 1002 A 1 
HETATM 9 C C5 BG6 . . . F 3 16.96 3.622 -26.626 1 60.59 ? C5 BG6 1002 A 1 
HETATM 10 O O4 BG6 . . . F 3 15.34 3.74 -24.753 1 60.19 ? O4 BG6 1002 A 1 
HETATM 11 C C6 BG6 . . . F 3 16.401 2.266 -27.069 1 58.97 ? C6 BG6 1002 A 1 
HETATM 12 O O6 BG6 . . . F 3 17.349 1.573 -27.881 1 59.1 ? O6 BG6 1002 A 1 
HETATM 13 P P BG6 . . . F 3 18.568 0.795 -27.213 1 59.77 ? P BG6 1002 A 1 
HETATM 14 O O1P BG6 . . . F 3 18.15 -0.152 -26.134 1 59.35 ? O1P BG6 1002 A 1 
HETATM 15 O O2P BG6 . . . F 3 19.599 1.929 -26.669 1 61.66 ? O2P BG6 1002 A 1 
HETATM 16 O O3P BG6 . . . F 3 19.303 0.017 -28.429 1 59.59 ? O3P BG6 1002 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#