data_3HMB # _model_server_result.job_id NG_yaCTc6ZQMhUbMfpkqWA _model_server_result.datetime_utc '2025-03-27 02:53:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":155}' # _entry.id 3HMB # _exptl.entry_id 3HMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HMB _cell.length_a 62.67 _cell.length_b 152.76 _cell.length_c 188.88 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 32 A HIS 29 1_555 D ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 A ND1 HIS 133 A HIS 130 1_555 D ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A SG CYS 141 A CYS 138 1_555 D ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 B ND1 HIS 32 B HIS 29 1_555 E ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 B ND1 HIS 133 B HIS 130 1_555 E ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 B SG CYS 141 B CYS 138 1_555 E ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 C ND1 HIS 32 C HIS 29 1_555 F ZN ZN . C ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 C ND1 HIS 133 C HIS 130 1_555 F ZN ZN . C ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc9 C SG CYS 141 C CYS 138 1_555 F ZN ZN . C ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HMB _atom_sites.fract_transf_matrix[1][1] 0.015957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 155 155 ZN ZN . E 2 ZN B 1 155 155 ZN ZN . F 2 ZN C 1 155 155 ZN ZN . G 3 HOH A 1 156 3 HOH TIP . G 3 HOH A 2 157 5 HOH TIP . G 3 HOH A 3 158 6 HOH TIP . G 3 HOH A 4 159 8 HOH TIP . G 3 HOH A 5 160 9 HOH TIP . G 3 HOH A 6 161 11 HOH TIP . G 3 HOH A 7 162 18 HOH TIP . G 3 HOH A 8 163 22 HOH TIP . G 3 HOH A 9 164 24 HOH TIP . G 3 HOH A 10 165 26 HOH TIP . G 3 HOH A 11 166 27 HOH TIP . G 3 HOH A 12 167 28 HOH TIP . G 3 HOH A 13 168 32 HOH TIP . G 3 HOH A 14 169 33 HOH TIP . G 3 HOH A 15 170 34 HOH TIP . G 3 HOH A 16 171 35 HOH TIP . G 3 HOH A 17 172 38 HOH TIP . G 3 HOH A 18 173 39 HOH TIP . G 3 HOH A 19 174 40 HOH TIP . G 3 HOH A 20 175 41 HOH TIP . G 3 HOH A 21 176 45 HOH TIP . G 3 HOH A 22 177 49 HOH TIP . G 3 HOH A 23 178 55 HOH TIP . G 3 HOH A 24 179 57 HOH TIP . G 3 HOH A 25 180 60 HOH TIP . G 3 HOH A 26 181 62 HOH TIP . G 3 HOH A 27 182 63 HOH TIP . G 3 HOH A 28 183 65 HOH TIP . G 3 HOH A 29 184 66 HOH TIP . G 3 HOH A 30 185 69 HOH TIP . G 3 HOH A 31 186 70 HOH TIP . G 3 HOH A 32 187 75 HOH TIP . G 3 HOH A 33 188 78 HOH TIP . G 3 HOH A 34 189 81 HOH TIP . G 3 HOH A 35 190 82 HOH TIP . G 3 HOH A 36 191 83 HOH TIP . G 3 HOH A 37 192 85 HOH TIP . G 3 HOH A 38 193 87 HOH TIP . G 3 HOH A 39 194 88 HOH TIP . G 3 HOH A 40 195 89 HOH TIP . G 3 HOH A 41 196 90 HOH TIP . G 3 HOH A 42 197 91 HOH TIP . G 3 HOH A 43 198 92 HOH TIP . G 3 HOH A 44 199 98 HOH TIP . G 3 HOH A 45 200 105 HOH TIP . G 3 HOH A 46 201 106 HOH TIP . G 3 HOH A 47 202 107 HOH TIP . G 3 HOH A 48 203 108 HOH TIP . G 3 HOH A 49 204 114 HOH TIP . G 3 HOH A 50 205 116 HOH TIP . G 3 HOH A 51 206 118 HOH TIP . G 3 HOH A 52 207 119 HOH TIP . G 3 HOH A 53 208 120 HOH TIP . G 3 HOH A 54 209 121 HOH TIP . G 3 HOH A 55 210 125 HOH TIP . G 3 HOH A 56 211 127 HOH TIP . G 3 HOH A 57 212 128 HOH TIP . G 3 HOH A 58 213 129 HOH TIP . G 3 HOH A 59 214 131 HOH TIP . G 3 HOH A 60 215 135 HOH TIP . G 3 HOH A 61 216 138 HOH TIP . G 3 HOH A 62 217 143 HOH TIP . G 3 HOH A 63 218 145 HOH TIP . H 3 HOH B 1 156 2 HOH TIP . H 3 HOH B 2 157 4 HOH TIP . H 3 HOH B 3 158 12 HOH TIP . H 3 HOH B 4 159 13 HOH TIP . H 3 HOH B 5 160 14 HOH TIP . H 3 HOH B 6 161 15 HOH TIP . H 3 HOH B 7 162 16 HOH TIP . H 3 HOH B 8 163 17 HOH TIP . H 3 HOH B 9 164 20 HOH TIP . H 3 HOH B 10 165 21 HOH TIP . H 3 HOH B 11 166 25 HOH TIP . H 3 HOH B 12 167 30 HOH TIP . H 3 HOH B 13 168 36 HOH TIP . H 3 HOH B 14 169 37 HOH TIP . H 3 HOH B 15 170 42 HOH TIP . H 3 HOH B 16 171 43 HOH TIP . H 3 HOH B 17 172 44 HOH TIP . H 3 HOH B 18 173 48 HOH TIP . H 3 HOH B 19 174 50 HOH TIP . H 3 HOH B 20 175 51 HOH TIP . H 3 HOH B 21 176 52 HOH TIP . H 3 HOH B 22 177 54 HOH TIP . H 3 HOH B 23 178 67 HOH TIP . H 3 HOH B 24 179 68 HOH TIP . H 3 HOH B 25 180 72 HOH TIP . H 3 HOH B 26 181 74 HOH TIP . H 3 HOH B 27 182 76 HOH TIP . H 3 HOH B 28 183 77 HOH TIP . H 3 HOH B 29 184 79 HOH TIP . H 3 HOH B 30 185 80 HOH TIP . H 3 HOH B 31 186 86 HOH TIP . H 3 HOH B 32 187 95 HOH TIP . H 3 HOH B 33 188 99 HOH TIP . H 3 HOH B 34 189 101 HOH TIP . H 3 HOH B 35 190 104 HOH TIP . H 3 HOH B 36 191 109 HOH TIP . H 3 HOH B 37 192 110 HOH TIP . H 3 HOH B 38 193 113 HOH TIP . H 3 HOH B 39 194 115 HOH TIP . H 3 HOH B 40 195 117 HOH TIP . H 3 HOH B 41 196 122 HOH TIP . H 3 HOH B 42 197 123 HOH TIP . H 3 HOH B 43 198 126 HOH TIP . H 3 HOH B 44 199 130 HOH TIP . H 3 HOH B 45 200 132 HOH TIP . H 3 HOH B 46 201 133 HOH TIP . H 3 HOH B 47 202 136 HOH TIP . H 3 HOH B 48 203 139 HOH TIP . H 3 HOH B 49 204 140 HOH TIP . H 3 HOH B 50 205 141 HOH TIP . H 3 HOH B 51 206 142 HOH TIP . H 3 HOH B 52 207 146 HOH TIP . H 3 HOH B 53 208 149 HOH TIP . H 3 HOH B 54 209 150 HOH TIP . I 3 HOH C 1 156 7 HOH TIP . I 3 HOH C 2 157 10 HOH TIP . I 3 HOH C 3 158 19 HOH TIP . I 3 HOH C 4 159 23 HOH TIP . I 3 HOH C 5 160 29 HOH TIP . I 3 HOH C 6 161 31 HOH TIP . I 3 HOH C 7 162 46 HOH TIP . I 3 HOH C 8 163 47 HOH TIP . I 3 HOH C 9 164 53 HOH TIP . I 3 HOH C 10 165 56 HOH TIP . I 3 HOH C 11 166 58 HOH TIP . I 3 HOH C 12 167 59 HOH TIP . I 3 HOH C 13 168 61 HOH TIP . I 3 HOH C 14 169 64 HOH TIP . I 3 HOH C 15 170 71 HOH TIP . I 3 HOH C 16 171 73 HOH TIP . I 3 HOH C 17 172 84 HOH TIP . I 3 HOH C 18 173 93 HOH TIP . I 3 HOH C 19 174 94 HOH TIP . I 3 HOH C 20 175 96 HOH TIP . I 3 HOH C 21 176 97 HOH TIP . I 3 HOH C 22 177 100 HOH TIP . I 3 HOH C 23 178 102 HOH TIP . I 3 HOH C 24 179 103 HOH TIP . I 3 HOH C 25 180 111 HOH TIP . I 3 HOH C 26 181 112 HOH TIP . I 3 HOH C 27 182 124 HOH TIP . I 3 HOH C 28 183 134 HOH TIP . I 3 HOH C 29 184 137 HOH TIP . I 3 HOH C 30 185 144 HOH TIP . I 3 HOH C 31 186 147 HOH TIP . I 3 HOH C 32 187 148 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.221 _atom_site.Cartn_y -20.76 _atom_site.Cartn_z -7.697 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 155 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #