data_3HMJ # _model_server_result.job_id YjDRb1C55CkvPI_wrgZGhg _model_server_result.datetime_utc '2024-11-28 01:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2748}' # _entry.id 3HMJ # _exptl.entry_id 3HMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HMJ _cell.length_a 231.884 _cell.length_b 231.884 _cell.length_c 756.784 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C12 H19 N O3' _chem_comp.formula_weight 225.284 _chem_comp.id CER _chem_comp.mon_nstd_flag . _chem_comp.name '(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CERULENIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 CER sing 70 n n C1 C2 CER sing 71 n n C1 O2 CER doub 72 n n N1 HN11 CER sing 73 n n N1 HN12 CER sing 74 n n O1 C4 CER doub 75 n n C2 C3 CER sing 76 n n C2 H21 CER sing 77 n n C2 H22 CER sing 78 n n C3 O3 CER sing 79 n n C3 C4 CER sing 80 n n C3 H31 CER sing 81 n n O3 HO3 CER sing 82 n n C4 C5 CER sing 83 n n C5 C6 CER sing 84 n n C5 H51 CER sing 85 n n C5 H52 CER sing 86 n n C6 C7 CER sing 87 n n C6 H61 CER sing 88 n n C6 H62 CER sing 89 n n C7 C8 CER doub 90 e n C7 H71 CER sing 91 n n C8 C9 CER sing 92 n n C8 H81 CER sing 93 n n C9 C10 CER sing 94 n n C9 H91 CER sing 95 n n C9 H92 CER sing 96 n n C10 C11 CER doub 97 e n C10 H101 CER sing 98 n n C11 C12 CER sing 99 n n C11 H111 CER sing 100 n n C12 H121 CER sing 101 n n C12 H122 CER sing 102 n n C12 H123 CER sing 103 n n # _atom_sites.entry_id 3HMJ _atom_sites.fract_transf_matrix[1][1] 0.004313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CER A 1 2748 2748 CER CER . H 3 CER B 1 2748 2748 CER CER . I 3 CER C 1 2748 2748 CER CER . J 4 FMN G 1 3051 3051 FMN FMN . K 4 FMN H 1 3051 3051 FMN FMN . L 4 FMN I 1 3051 3051 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CER . . . G 3 173.776 -51.597 -15.169 1 131.55 ? C1 CER 2748 A 1 HETATM 2 N N1 CER . . . G 3 174.835 -51.473 -16.175 1 67.61 ? N1 CER 2748 A 1 HETATM 3 O O1 CER . . . G 3 177.312 -51.201 -11.824 1 240.25 ? O1 CER 2748 A 1 HETATM 4 C C2 CER . . . G 3 174.029 -51.092 -13.724 1 157.66 ? C2 CER 2748 A 1 HETATM 5 O O2 CER . . . G 3 172.682 -51.936 -15.5 1 77.23 ? O2 CER 2748 A 1 HETATM 6 C C3 CER . . . G 3 175.387 -51.644 -13.212 1 129.24 ? C3 CER 2748 A 1 HETATM 7 O O3 CER . . . G 3 175.2 -52.957 -12.725 1 129.41 ? O3 CER 2748 A 1 HETATM 8 C C4 CER . . . G 3 175.987 -50.775 -12.068 1 249.32 ? C4 CER 2748 A 1 HETATM 9 C C5 CER . . . G 3 175.175 -50.951 -10.755 1 179.04 ? C5 CER 2748 A 1 HETATM 10 C C6 CER . . . G 3 176.164 -51.247 -9.603 1 158.83 ? C6 CER 2748 A 1 HETATM 11 C C7 CER . . . G 3 176.648 -49.91 -9.014 1 158.95 ? C7 CER 2748 A 1 HETATM 12 C C8 CER . . . G 3 176.008 -49.309 -8.019 1 128.18 ? C8 CER 2748 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 95 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 12 #