data_3HMK
#
_model_server_result.job_id            YSp41Vxo81SGm5QNE2VViA 
_model_server_result.datetime_utc      '2024-11-08 19:36:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":340}' 
#
_entry.id    3HMK 
#
_exptl.entry_id    3HMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HMK 
_cell.length_a            48.261 
_cell.length_b            102.96 
_cell.length_c            120.923 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 56 A LYS 56 1_555 D C4A PLP . A PLP 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.537 ? 
covale ? covale2 B NZ LYS 56 B LYS 56 1_555 F C4A PLP . B PLP 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? 
metalc ? metalc1 A OE2 GLU 210 A GLU 210 1_555 C MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc2 A O ALA 214 A ALA 214 1_555 C MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc3 A OD1 ASP 216 A ASP 216 1_555 C MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc4 C MN MN . A MN 340 1_555 G O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc5 C MN MN . A MN 340 1_555 G O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc6 B OE2 GLU 210 B GLU 210 1_555 E MN MN . B MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc7 B O ALA 214 B ALA 214 1_555 E MN MN . B MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc8 B OD1 ASP 216 B ASP 216 1_555 E MN MN . B MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc9 E MN MN . B MN 340 1_555 H O HOH . B HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc10 E MN MN . B MN 340 1_555 H O HOH . B HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc11 E MN MN . B MN 340 1_555 H O HOH . B HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3HMK 
_atom_sites.fract_transf_matrix[1][1]    0.020721 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009713 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00827 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 340 340 MN MN . 
D 3 PLP A 1 350 350 PLP PLP . 
E 2 MN B 1 340 340 MN MN . 
F 3 PLP B 1 350 350 PLP PLP . 
G 4 HOH A 1 341 1 HOH HOH . 
G 4 HOH A 2 342 2 HOH HOH . 
G 4 HOH A 3 343 3 HOH HOH . 
G 4 HOH A 4 344 4 HOH HOH . 
G 4 HOH A 5 345 5 HOH HOH . 
G 4 HOH A 6 346 6 HOH HOH . 
G 4 HOH A 7 347 7 HOH HOH . 
G 4 HOH A 8 348 8 HOH HOH . 
G 4 HOH A 9 349 9 HOH HOH . 
G 4 HOH A 10 351 11 HOH HOH . 
G 4 HOH A 11 352 13 HOH HOH . 
G 4 HOH A 12 353 15 HOH HOH . 
G 4 HOH A 13 354 16 HOH HOH . 
G 4 HOH A 14 355 18 HOH HOH . 
G 4 HOH A 15 356 19 HOH HOH . 
G 4 HOH A 16 357 20 HOH HOH . 
G 4 HOH A 17 358 21 HOH HOH . 
G 4 HOH A 18 359 22 HOH HOH . 
G 4 HOH A 19 360 27 HOH HOH . 
G 4 HOH A 20 361 30 HOH HOH . 
G 4 HOH A 21 362 31 HOH HOH . 
G 4 HOH A 22 363 33 HOH HOH . 
G 4 HOH A 23 364 34 HOH HOH . 
G 4 HOH A 24 365 35 HOH HOH . 
G 4 HOH A 25 366 36 HOH HOH . 
G 4 HOH A 26 367 37 HOH HOH . 
G 4 HOH A 27 368 40 HOH HOH . 
G 4 HOH A 28 369 41 HOH HOH . 
G 4 HOH A 29 370 42 HOH HOH . 
G 4 HOH A 30 371 44 HOH HOH . 
G 4 HOH A 31 372 45 HOH HOH . 
G 4 HOH A 32 373 46 HOH HOH . 
G 4 HOH A 33 374 47 HOH HOH . 
G 4 HOH A 34 375 48 HOH HOH . 
G 4 HOH A 35 376 49 HOH HOH . 
G 4 HOH A 36 377 50 HOH HOH . 
G 4 HOH A 37 378 51 HOH HOH . 
G 4 HOH A 38 379 52 HOH HOH . 
G 4 HOH A 39 380 53 HOH HOH . 
G 4 HOH A 40 381 55 HOH HOH . 
G 4 HOH A 41 382 56 HOH HOH . 
G 4 HOH A 42 383 59 HOH HOH . 
G 4 HOH A 43 384 60 HOH HOH . 
G 4 HOH A 44 385 61 HOH HOH . 
G 4 HOH A 45 386 64 HOH HOH . 
G 4 HOH A 46 387 66 HOH HOH . 
G 4 HOH A 47 388 67 HOH HOH . 
G 4 HOH A 48 389 70 HOH HOH . 
G 4 HOH A 49 390 72 HOH HOH . 
G 4 HOH A 50 391 73 HOH HOH . 
G 4 HOH A 51 392 74 HOH HOH . 
G 4 HOH A 52 393 75 HOH HOH . 
G 4 HOH A 53 394 76 HOH HOH . 
G 4 HOH A 54 395 81 HOH HOH . 
G 4 HOH A 55 396 82 HOH HOH . 
G 4 HOH A 56 397 86 HOH HOH . 
G 4 HOH A 57 398 87 HOH HOH . 
G 4 HOH A 58 399 88 HOH HOH . 
G 4 HOH A 59 400 90 HOH HOH . 
G 4 HOH A 60 401 92 HOH HOH . 
G 4 HOH A 61 402 93 HOH HOH . 
G 4 HOH A 62 403 94 HOH HOH . 
G 4 HOH A 63 404 96 HOH HOH . 
G 4 HOH A 64 405 97 HOH HOH . 
G 4 HOH A 65 406 99 HOH HOH . 
G 4 HOH A 66 407 102 HOH HOH . 
G 4 HOH A 67 408 103 HOH HOH . 
G 4 HOH A 68 409 107 HOH HOH . 
G 4 HOH A 69 410 113 HOH HOH . 
G 4 HOH A 70 411 115 HOH HOH . 
G 4 HOH A 71 412 117 HOH HOH . 
G 4 HOH A 72 413 118 HOH HOH . 
G 4 HOH A 73 414 121 HOH HOH . 
G 4 HOH A 74 415 122 HOH HOH . 
G 4 HOH A 75 416 123 HOH HOH . 
G 4 HOH A 76 417 128 HOH HOH . 
G 4 HOH A 77 418 129 HOH HOH . 
G 4 HOH A 78 419 133 HOH HOH . 
G 4 HOH A 79 420 135 HOH HOH . 
G 4 HOH A 80 421 139 HOH HOH . 
G 4 HOH A 81 422 141 HOH HOH . 
G 4 HOH A 82 423 142 HOH HOH . 
G 4 HOH A 83 424 143 HOH HOH . 
G 4 HOH A 84 425 146 HOH HOH . 
G 4 HOH A 85 426 148 HOH HOH . 
G 4 HOH A 86 427 155 HOH HOH . 
G 4 HOH A 87 428 158 HOH HOH . 
G 4 HOH A 88 429 161 HOH HOH . 
G 4 HOH A 89 430 163 HOH HOH . 
G 4 HOH A 90 431 164 HOH HOH . 
G 4 HOH A 91 432 165 HOH HOH . 
G 4 HOH A 92 433 166 HOH HOH . 
G 4 HOH A 93 434 167 HOH HOH . 
G 4 HOH A 94 435 168 HOH HOH . 
G 4 HOH A 95 436 169 HOH HOH . 
G 4 HOH A 96 437 170 HOH HOH . 
G 4 HOH A 97 438 173 HOH HOH . 
G 4 HOH A 98 439 174 HOH HOH . 
G 4 HOH A 99 440 176 HOH HOH . 
G 4 HOH A 100 441 177 HOH HOH . 
G 4 HOH A 101 442 180 HOH HOH . 
G 4 HOH A 102 443 181 HOH HOH . 
G 4 HOH A 103 444 183 HOH HOH . 
G 4 HOH A 104 445 184 HOH HOH . 
G 4 HOH A 105 446 185 HOH HOH . 
G 4 HOH A 106 447 186 HOH HOH . 
G 4 HOH A 107 448 187 HOH HOH . 
G 4 HOH A 108 449 188 HOH HOH . 
G 4 HOH A 109 450 189 HOH HOH . 
G 4 HOH A 110 451 190 HOH HOH . 
G 4 HOH A 111 452 191 HOH HOH . 
G 4 HOH A 112 453 192 HOH HOH . 
G 4 HOH A 113 454 193 HOH HOH . 
G 4 HOH A 114 455 194 HOH HOH . 
G 4 HOH A 115 456 195 HOH HOH . 
G 4 HOH A 116 457 196 HOH HOH . 
G 4 HOH A 117 458 171 HOH HOH . 
G 4 HOH A 118 459 179 HOH HOH . 
H 4 HOH B 1 341 10 HOH HOH . 
H 4 HOH B 2 342 12 HOH HOH . 
H 4 HOH B 3 343 14 HOH HOH . 
H 4 HOH B 4 344 17 HOH HOH . 
H 4 HOH B 5 345 23 HOH HOH . 
H 4 HOH B 6 346 24 HOH HOH . 
H 4 HOH B 7 347 25 HOH HOH . 
H 4 HOH B 8 348 26 HOH HOH . 
H 4 HOH B 9 349 28 HOH HOH . 
H 4 HOH B 10 351 29 HOH HOH . 
H 4 HOH B 11 352 32 HOH HOH . 
H 4 HOH B 12 353 38 HOH HOH . 
H 4 HOH B 13 354 39 HOH HOH . 
H 4 HOH B 14 355 43 HOH HOH . 
H 4 HOH B 15 356 54 HOH HOH . 
H 4 HOH B 16 357 57 HOH HOH . 
H 4 HOH B 17 358 58 HOH HOH . 
H 4 HOH B 18 359 62 HOH HOH . 
H 4 HOH B 19 360 63 HOH HOH . 
H 4 HOH B 20 361 65 HOH HOH . 
H 4 HOH B 21 362 68 HOH HOH . 
H 4 HOH B 22 363 69 HOH HOH . 
H 4 HOH B 23 364 71 HOH HOH . 
H 4 HOH B 24 365 77 HOH HOH . 
H 4 HOH B 25 366 78 HOH HOH . 
H 4 HOH B 26 367 79 HOH HOH . 
H 4 HOH B 27 368 80 HOH HOH . 
H 4 HOH B 28 369 83 HOH HOH . 
H 4 HOH B 29 370 84 HOH HOH . 
H 4 HOH B 30 371 85 HOH HOH . 
H 4 HOH B 31 372 89 HOH HOH . 
H 4 HOH B 32 373 91 HOH HOH . 
H 4 HOH B 33 374 95 HOH HOH . 
H 4 HOH B 34 375 98 HOH HOH . 
H 4 HOH B 35 376 100 HOH HOH . 
H 4 HOH B 36 377 101 HOH HOH . 
H 4 HOH B 37 378 104 HOH HOH . 
H 4 HOH B 38 379 105 HOH HOH . 
H 4 HOH B 39 380 106 HOH HOH . 
H 4 HOH B 40 381 108 HOH HOH . 
H 4 HOH B 41 382 109 HOH HOH . 
H 4 HOH B 42 383 110 HOH HOH . 
H 4 HOH B 43 384 111 HOH HOH . 
H 4 HOH B 44 385 112 HOH HOH . 
H 4 HOH B 45 386 114 HOH HOH . 
H 4 HOH B 46 387 116 HOH HOH . 
H 4 HOH B 47 388 119 HOH HOH . 
H 4 HOH B 48 389 120 HOH HOH . 
H 4 HOH B 49 390 124 HOH HOH . 
H 4 HOH B 50 391 125 HOH HOH . 
H 4 HOH B 51 392 126 HOH HOH . 
H 4 HOH B 52 393 127 HOH HOH . 
H 4 HOH B 53 394 130 HOH HOH . 
H 4 HOH B 54 395 131 HOH HOH . 
H 4 HOH B 55 396 132 HOH HOH . 
H 4 HOH B 56 397 134 HOH HOH . 
H 4 HOH B 57 398 136 HOH HOH . 
H 4 HOH B 58 399 137 HOH HOH . 
H 4 HOH B 59 400 138 HOH HOH . 
H 4 HOH B 60 401 140 HOH HOH . 
H 4 HOH B 61 402 144 HOH HOH . 
H 4 HOH B 62 403 145 HOH HOH . 
H 4 HOH B 63 404 147 HOH HOH . 
H 4 HOH B 64 405 149 HOH HOH . 
H 4 HOH B 65 406 150 HOH HOH . 
H 4 HOH B 66 407 151 HOH HOH . 
H 4 HOH B 67 408 152 HOH HOH . 
H 4 HOH B 68 409 153 HOH HOH . 
H 4 HOH B 69 410 154 HOH HOH . 
H 4 HOH B 70 411 156 HOH HOH . 
H 4 HOH B 71 412 157 HOH HOH . 
H 4 HOH B 72 413 159 HOH HOH . 
H 4 HOH B 73 414 160 HOH HOH . 
H 4 HOH B 74 415 162 HOH HOH . 
H 4 HOH B 75 417 172 HOH HOH . 
H 4 HOH B 76 418 175 HOH HOH . 
H 4 HOH B 77 419 178 HOH HOH . 
H 4 HOH B 78 421 182 HOH HOH . 
H 4 HOH B 79 422 197 HOH HOH . 
H 4 HOH B 80 423 198 HOH HOH . 
H 4 HOH B 81 424 199 HOH HOH . 
H 4 HOH B 82 425 200 HOH HOH . 
H 4 HOH B 83 426 201 HOH HOH . 
H 4 HOH B 84 427 202 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               8.154 
_atom_site.Cartn_y               -22.119 
_atom_site.Cartn_z               -17.4 
_atom_site.occupancy             0.7 
_atom_site.B_iso_or_equiv        28.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           340 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#