data_3HML # _model_server_result.job_id c3rvQdmymNPAfwE5FsDh-w _model_server_result.datetime_utc '2024-11-08 22:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":259}' # _entry.id 3HML # _exptl.entry_id 3HML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRROLOQUINOLINE QUINONE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HML _cell.length_a 75.06 _cell.length_b 118.291 _cell.length_c 68.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HML _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H6 N2 O8' _chem_comp.formula_weight 330.206 _chem_comp.id PQQ _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRROLOQUINOLINE QUINONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PQQ sing 260 n y N1 C1A PQQ sing 261 n y N1 HN1 PQQ sing 262 n n C2 C2X PQQ sing 263 n n C2 C3 PQQ doub 264 n y C2X O2A PQQ doub 265 n n C2X O2B PQQ sing 266 n n O2B HOB2 PQQ sing 267 n n C3 C3A PQQ sing 268 n y C3 H3 PQQ sing 269 n n C3A C1A PQQ doub 270 n y C3A C4 PQQ sing 271 n n C1A C9A PQQ sing 272 n y C4 O4 PQQ doub 273 n n C4 C5 PQQ sing 274 n n C5 O5 PQQ doub 275 n n C5 C6A PQQ sing 276 n n C6A N6 PQQ doub 277 n y C6A C9A PQQ sing 278 n y N6 C7 PQQ sing 279 n y C7 C7X PQQ sing 280 n n C7 C8 PQQ doub 281 n y C7X O7A PQQ doub 282 n n C7X O7B PQQ sing 283 n n O7B HOB7 PQQ sing 284 n n C8 C9 PQQ sing 285 n y C8 H8 PQQ sing 286 n n C9 C9X PQQ sing 287 n n C9 C9A PQQ doub 288 n y C9X O9A PQQ doub 289 n n C9X O9B PQQ sing 290 n n O9B HOB9 PQQ sing 291 n n # _atom_sites.entry_id 3HML _atom_sites.fract_transf_matrix[1][1] 0.013323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PQQ A 1 259 259 PQQ PQQ . D 2 PQQ B 1 259 259 PQQ PQQ . E 3 HOH A 1 260 260 HOH HOH . E 3 HOH A 2 261 261 HOH HOH . E 3 HOH A 3 262 262 HOH HOH . E 3 HOH A 4 263 263 HOH HOH . E 3 HOH A 5 264 264 HOH HOH . E 3 HOH A 6 265 265 HOH HOH . E 3 HOH A 7 266 266 HOH HOH . E 3 HOH A 8 267 267 HOH HOH . E 3 HOH A 9 268 268 HOH HOH . E 3 HOH A 10 269 269 HOH HOH . E 3 HOH A 11 270 270 HOH HOH . E 3 HOH A 12 271 271 HOH HOH . E 3 HOH A 13 272 272 HOH HOH . E 3 HOH A 14 273 273 HOH HOH . E 3 HOH A 15 274 274 HOH HOH . E 3 HOH A 16 275 275 HOH HOH . E 3 HOH A 17 276 276 HOH HOH . E 3 HOH A 18 277 277 HOH HOH . E 3 HOH A 19 278 278 HOH HOH . E 3 HOH A 20 279 279 HOH HOH . E 3 HOH A 21 280 280 HOH HOH . E 3 HOH A 22 281 281 HOH HOH . E 3 HOH A 23 282 282 HOH HOH . E 3 HOH A 24 283 283 HOH HOH . E 3 HOH A 25 284 284 HOH HOH . E 3 HOH A 26 285 285 HOH HOH . E 3 HOH A 27 286 286 HOH HOH . E 3 HOH A 28 287 287 HOH HOH . E 3 HOH A 29 288 288 HOH HOH . E 3 HOH A 30 289 289 HOH HOH . E 3 HOH A 31 290 290 HOH HOH . E 3 HOH A 32 291 291 HOH HOH . F 3 HOH B 1 260 260 HOH HOH . F 3 HOH B 2 261 261 HOH HOH . F 3 HOH B 3 262 262 HOH HOH . F 3 HOH B 4 263 263 HOH HOH . F 3 HOH B 5 264 264 HOH HOH . F 3 HOH B 6 265 265 HOH HOH . F 3 HOH B 7 266 266 HOH HOH . F 3 HOH B 8 267 267 HOH HOH . F 3 HOH B 9 268 268 HOH HOH . F 3 HOH B 10 269 269 HOH HOH . F 3 HOH B 11 270 270 HOH HOH . F 3 HOH B 12 271 271 HOH HOH . F 3 HOH B 13 272 272 HOH HOH . F 3 HOH B 14 273 273 HOH HOH . F 3 HOH B 15 274 274 HOH HOH . F 3 HOH B 16 275 275 HOH HOH . F 3 HOH B 17 276 276 HOH HOH . F 3 HOH B 18 277 277 HOH HOH . F 3 HOH B 19 278 278 HOH HOH . F 3 HOH B 20 279 279 HOH HOH . F 3 HOH B 21 280 280 HOH HOH . F 3 HOH B 22 281 281 HOH HOH . F 3 HOH B 23 282 282 HOH HOH . F 3 HOH B 24 284 284 HOH HOH . F 3 HOH B 25 285 285 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PQQ . . . D 2 -7.988 40.641 32.998 1 58.66 ? N1 PQQ 259 B 1 HETATM 2 C C2 PQQ . . . D 2 -7.651 39.552 33.794 1 58.94 ? C2 PQQ 259 B 1 HETATM 3 C C2X PQQ . . . D 2 -8.015 38.109 33.715 1 59.12 ? C2X PQQ 259 B 1 HETATM 4 O O2A PQQ . . . D 2 -7.057 37.328 33.885 1 61.33 ? O2A PQQ 259 B 1 HETATM 5 O O2B PQQ . . . D 2 -9.157 37.663 33.463 1 63.49 ? O2B PQQ 259 B 1 HETATM 6 C C3 PQQ . . . D 2 -6.757 39.918 34.792 1 59.24 ? C3 PQQ 259 B 1 HETATM 7 C C3A PQQ . . . D 2 -6.563 41.309 34.607 1 57.68 ? C3A PQQ 259 B 1 HETATM 8 C C1A PQQ . . . D 2 -7.363 41.753 33.473 1 57.89 ? C1A PQQ 259 B 1 HETATM 9 C C4 PQQ . . . D 2 -5.716 42.26 35.349 1 59.25 ? C4 PQQ 259 B 1 HETATM 10 O O4 PQQ . . . D 2 -5.037 41.824 36.336 1 59.82 ? O4 PQQ 259 B 1 HETATM 11 C C5 PQQ . . . D 2 -5.695 43.698 34.925 1 59.23 ? C5 PQQ 259 B 1 HETATM 12 O O5 PQQ . . . D 2 -4.968 44.494 35.588 1 58.99 ? O5 PQQ 259 B 1 HETATM 13 C C6A PQQ . . . D 2 -6.543 44.139 33.734 1 59.27 ? C6A PQQ 259 B 1 HETATM 14 N N6 PQQ . . . D 2 -6.579 45.455 33.297 1 58 ? N6 PQQ 259 B 1 HETATM 15 C C7 PQQ . . . D 2 -7.339 45.813 32.233 1 57.73 ? C7 PQQ 259 B 1 HETATM 16 C C7X PQQ . . . D 2 -7.493 47.159 31.584 1 57.36 ? C7X PQQ 259 B 1 HETATM 17 O O7A PQQ . . . D 2 -6.987 48.218 31.948 1 50.85 ? O7A PQQ 259 B 1 HETATM 18 O O7B PQQ . . . D 2 -8.163 47.155 30.551 1 52.57 ? O7B PQQ 259 B 1 HETATM 19 C C8 PQQ . . . D 2 -8.104 44.878 31.575 1 59.01 ? C8 PQQ 259 B 1 HETATM 20 C C9 PQQ . . . D 2 -8.173 43.53 31.886 1 59.57 ? C9 PQQ 259 B 1 HETATM 21 C C9X PQQ . . . D 2 -9.103 42.68 31.056 1 58.66 ? C9X PQQ 259 B 1 HETATM 22 O O9A PQQ . . . D 2 -9.389 43.061 29.907 1 60.7 ? O9A PQQ 259 B 1 HETATM 23 O O9B PQQ . . . D 2 -9.658 41.684 31.545 1 56.29 ? O9B PQQ 259 B 1 HETATM 24 C C9A PQQ . . . D 2 -7.37 43.079 33.04 1 58.55 ? C9A PQQ 259 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 441 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #