data_3HML
#
_model_server_result.job_id            EjlWlMKsSEEBQR-EGJFqEA 
_model_server_result.datetime_utc      '2024-11-23 15:21:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hml 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":259}' 
#
_entry.id    3HML 
#
_exptl.entry_id    3HML 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRROLOQUINOLINE QUINONE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HML 
_cell.length_a            75.06 
_cell.length_b            118.291 
_cell.length_c            68.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HML 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H6 N2 O8' 
_chem_comp.formula_weight    330.206 
_chem_comp.id                PQQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRROLOQUINOLINE QUINONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PQQ sing 260 n y 
N1 C1A PQQ sing 261 n y 
N1 HN1 PQQ sing 262 n n 
C2 C2X PQQ sing 263 n n 
C2 C3 PQQ doub 264 n y 
C2X O2A PQQ doub 265 n n 
C2X O2B PQQ sing 266 n n 
O2B HOB2 PQQ sing 267 n n 
C3 C3A PQQ sing 268 n y 
C3 H3 PQQ sing 269 n n 
C3A C1A PQQ doub 270 n y 
C3A C4 PQQ sing 271 n n 
C1A C9A PQQ sing 272 n y 
C4 O4 PQQ doub 273 n n 
C4 C5 PQQ sing 274 n n 
C5 O5 PQQ doub 275 n n 
C5 C6A PQQ sing 276 n n 
C6A N6 PQQ doub 277 n y 
C6A C9A PQQ sing 278 n y 
N6 C7 PQQ sing 279 n y 
C7 C7X PQQ sing 280 n n 
C7 C8 PQQ doub 281 n y 
C7X O7A PQQ doub 282 n n 
C7X O7B PQQ sing 283 n n 
O7B HOB7 PQQ sing 284 n n 
C8 C9 PQQ sing 285 n y 
C8 H8 PQQ sing 286 n n 
C9 C9X PQQ sing 287 n n 
C9 C9A PQQ doub 288 n y 
C9X O9A PQQ doub 289 n n 
C9X O9B PQQ sing 290 n n 
O9B HOB9 PQQ sing 291 n n 
#
_atom_sites.entry_id                     3HML 
_atom_sites.fract_transf_matrix[1][1]    0.013323 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014697 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PQQ A 1 259 259 PQQ PQQ . 
D 2 PQQ B 1 259 259 PQQ PQQ . 
E 3 HOH A 1 260 260 HOH HOH . 
E 3 HOH A 2 261 261 HOH HOH . 
E 3 HOH A 3 262 262 HOH HOH . 
E 3 HOH A 4 263 263 HOH HOH . 
E 3 HOH A 5 264 264 HOH HOH . 
E 3 HOH A 6 265 265 HOH HOH . 
E 3 HOH A 7 266 266 HOH HOH . 
E 3 HOH A 8 267 267 HOH HOH . 
E 3 HOH A 9 268 268 HOH HOH . 
E 3 HOH A 10 269 269 HOH HOH . 
E 3 HOH A 11 270 270 HOH HOH . 
E 3 HOH A 12 271 271 HOH HOH . 
E 3 HOH A 13 272 272 HOH HOH . 
E 3 HOH A 14 273 273 HOH HOH . 
E 3 HOH A 15 274 274 HOH HOH . 
E 3 HOH A 16 275 275 HOH HOH . 
E 3 HOH A 17 276 276 HOH HOH . 
E 3 HOH A 18 277 277 HOH HOH . 
E 3 HOH A 19 278 278 HOH HOH . 
E 3 HOH A 20 279 279 HOH HOH . 
E 3 HOH A 21 280 280 HOH HOH . 
E 3 HOH A 22 281 281 HOH HOH . 
E 3 HOH A 23 282 282 HOH HOH . 
E 3 HOH A 24 283 283 HOH HOH . 
E 3 HOH A 25 284 284 HOH HOH . 
E 3 HOH A 26 285 285 HOH HOH . 
E 3 HOH A 27 286 286 HOH HOH . 
E 3 HOH A 28 287 287 HOH HOH . 
E 3 HOH A 29 288 288 HOH HOH . 
E 3 HOH A 30 289 289 HOH HOH . 
E 3 HOH A 31 290 290 HOH HOH . 
E 3 HOH A 32 291 291 HOH HOH . 
F 3 HOH B 1 260 260 HOH HOH . 
F 3 HOH B 2 261 261 HOH HOH . 
F 3 HOH B 3 262 262 HOH HOH . 
F 3 HOH B 4 263 263 HOH HOH . 
F 3 HOH B 5 264 264 HOH HOH . 
F 3 HOH B 6 265 265 HOH HOH . 
F 3 HOH B 7 266 266 HOH HOH . 
F 3 HOH B 8 267 267 HOH HOH . 
F 3 HOH B 9 268 268 HOH HOH . 
F 3 HOH B 10 269 269 HOH HOH . 
F 3 HOH B 11 270 270 HOH HOH . 
F 3 HOH B 12 271 271 HOH HOH . 
F 3 HOH B 13 272 272 HOH HOH . 
F 3 HOH B 14 273 273 HOH HOH . 
F 3 HOH B 15 274 274 HOH HOH . 
F 3 HOH B 16 275 275 HOH HOH . 
F 3 HOH B 17 276 276 HOH HOH . 
F 3 HOH B 18 277 277 HOH HOH . 
F 3 HOH B 19 278 278 HOH HOH . 
F 3 HOH B 20 279 279 HOH HOH . 
F 3 HOH B 21 280 280 HOH HOH . 
F 3 HOH B 22 281 281 HOH HOH . 
F 3 HOH B 23 282 282 HOH HOH . 
F 3 HOH B 24 284 284 HOH HOH . 
F 3 HOH B 25 285 285 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PQQ . . . D 2 -7.988 40.641 32.998 1 58.66 ? N1 PQQ 259 B 1 
HETATM 2 C C2 PQQ . . . D 2 -7.651 39.552 33.794 1 58.94 ? C2 PQQ 259 B 1 
HETATM 3 C C2X PQQ . . . D 2 -8.015 38.109 33.715 1 59.12 ? C2X PQQ 259 B 1 
HETATM 4 O O2A PQQ . . . D 2 -7.057 37.328 33.885 1 61.33 ? O2A PQQ 259 B 1 
HETATM 5 O O2B PQQ . . . D 2 -9.157 37.663 33.463 1 63.49 ? O2B PQQ 259 B 1 
HETATM 6 C C3 PQQ . . . D 2 -6.757 39.918 34.792 1 59.24 ? C3 PQQ 259 B 1 
HETATM 7 C C3A PQQ . . . D 2 -6.563 41.309 34.607 1 57.68 ? C3A PQQ 259 B 1 
HETATM 8 C C1A PQQ . . . D 2 -7.363 41.753 33.473 1 57.89 ? C1A PQQ 259 B 1 
HETATM 9 C C4 PQQ . . . D 2 -5.716 42.26 35.349 1 59.25 ? C4 PQQ 259 B 1 
HETATM 10 O O4 PQQ . . . D 2 -5.037 41.824 36.336 1 59.82 ? O4 PQQ 259 B 1 
HETATM 11 C C5 PQQ . . . D 2 -5.695 43.698 34.925 1 59.23 ? C5 PQQ 259 B 1 
HETATM 12 O O5 PQQ . . . D 2 -4.968 44.494 35.588 1 58.99 ? O5 PQQ 259 B 1 
HETATM 13 C C6A PQQ . . . D 2 -6.543 44.139 33.734 1 59.27 ? C6A PQQ 259 B 1 
HETATM 14 N N6 PQQ . . . D 2 -6.579 45.455 33.297 1 58 ? N6 PQQ 259 B 1 
HETATM 15 C C7 PQQ . . . D 2 -7.339 45.813 32.233 1 57.73 ? C7 PQQ 259 B 1 
HETATM 16 C C7X PQQ . . . D 2 -7.493 47.159 31.584 1 57.36 ? C7X PQQ 259 B 1 
HETATM 17 O O7A PQQ . . . D 2 -6.987 48.218 31.948 1 50.85 ? O7A PQQ 259 B 1 
HETATM 18 O O7B PQQ . . . D 2 -8.163 47.155 30.551 1 52.57 ? O7B PQQ 259 B 1 
HETATM 19 C C8 PQQ . . . D 2 -8.104 44.878 31.575 1 59.01 ? C8 PQQ 259 B 1 
HETATM 20 C C9 PQQ . . . D 2 -8.173 43.53 31.886 1 59.57 ? C9 PQQ 259 B 1 
HETATM 21 C C9X PQQ . . . D 2 -9.103 42.68 31.056 1 58.66 ? C9X PQQ 259 B 1 
HETATM 22 O O9A PQQ . . . D 2 -9.389 43.061 29.907 1 60.7 ? O9A PQQ 259 B 1 
HETATM 23 O O9B PQQ . . . D 2 -9.658 41.684 31.545 1 56.29 ? O9B PQQ 259 B 1 
HETATM 24 C C9A PQQ . . . D 2 -7.37 43.079 33.04 1 58.55 ? C9A PQQ 259 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#