data_3HMN # _model_server_result.job_id 50XOIwzR8uc6p_lNNbBQAw _model_server_result.datetime_utc '2024-11-18 17:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3HMN # _exptl.entry_id 3HMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HMN _cell.length_a 70.98 _cell.length_b 104.95 _cell.length_c 111.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -104.95 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 120 n n PG O2G ATP sing 121 n n PG O3G ATP sing 122 n n PG O3B ATP sing 123 n n O2G HOG2 ATP sing 124 n n O3G HOG3 ATP sing 125 n n PB O1B ATP doub 126 n n PB O2B ATP sing 127 n n PB O3B ATP sing 128 n n PB O3A ATP sing 129 n n O2B HOB2 ATP sing 130 n n PA O1A ATP doub 131 n n PA O2A ATP sing 132 n n PA O3A ATP sing 133 n n PA O5' ATP sing 134 n n O2A HOA2 ATP sing 135 n n O5' C5' ATP sing 136 n n C5' C4' ATP sing 137 n n C5' "H5'1" ATP sing 138 n n C5' "H5'2" ATP sing 139 n n C4' O4' ATP sing 140 n n C4' C3' ATP sing 141 n n C4' H4' ATP sing 142 n n O4' C1' ATP sing 143 n n C3' O3' ATP sing 144 n n C3' C2' ATP sing 145 n n C3' H3' ATP sing 146 n n O3' HO3' ATP sing 147 n n C2' O2' ATP sing 148 n n C2' C1' ATP sing 149 n n C2' H2' ATP sing 150 n n O2' HO2' ATP sing 151 n n C1' N9 ATP sing 152 n n C1' H1' ATP sing 153 n n N9 C8 ATP sing 154 n y N9 C4 ATP sing 155 n y C8 N7 ATP doub 156 n y C8 H8 ATP sing 157 n n N7 C5 ATP sing 158 n y C5 C6 ATP sing 159 n y C5 C4 ATP doub 160 n y C6 N6 ATP sing 161 n n C6 N1 ATP doub 162 n y N6 HN61 ATP sing 163 n n N6 HN62 ATP sing 164 n n N1 C2 ATP sing 165 n y C2 N3 ATP doub 166 n y C2 H2 ATP sing 167 n n N3 C4 ATP sing 168 n y # _atom_sites.entry_id 3HMN _atom_sites.fract_transf_matrix[1][1] 0.014088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1 1 ATP ATP . C 3 7PE A 1 1153 1153 7PE 7PE . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 6 6 HOH HOH . D 4 HOH A 4 7 7 HOH HOH . D 4 HOH A 5 9 9 HOH HOH . D 4 HOH A 6 10 10 HOH HOH . D 4 HOH A 7 26 26 HOH HOH . D 4 HOH A 8 33 33 HOH HOH . D 4 HOH A 9 35 35 HOH HOH . D 4 HOH A 10 38 38 HOH HOH . D 4 HOH A 11 42 42 HOH HOH . D 4 HOH A 12 43 43 HOH HOH . D 4 HOH A 13 44 44 HOH HOH . D 4 HOH A 14 45 45 HOH HOH . D 4 HOH A 15 46 46 HOH HOH . D 4 HOH A 16 47 47 HOH HOH . D 4 HOH A 17 48 48 HOH HOH . D 4 HOH A 18 49 49 HOH HOH . D 4 HOH A 19 51 51 HOH HOH . D 4 HOH A 20 52 52 HOH HOH . D 4 HOH A 21 53 53 HOH HOH . D 4 HOH A 22 54 54 HOH HOH . D 4 HOH A 23 55 55 HOH HOH . D 4 HOH A 24 810 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 6.273 -43.085 -16.979 0 40 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . B 2 5.739 -42.014 -17.901 0 40 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . B 2 6.801 -44.301 -17.674 0 40 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . B 2 7.153 -42.608 -15.852 0 40 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . B 2 4.516 -42.702 -15.009 1 93.37 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . B 2 3.893 -43.667 -14.019 1 93.08 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . B 2 3.721 -41.517 -15.517 1 92.94 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . B 2 5.024 -43.555 -16.281 1 93.24 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . B 2 6.271 -42.171 -12.843 1 91.74 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . B 2 7.41 -41.2 -12.613 1 91.82 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . B 2 6.418 -43.621 -12.433 1 91.69 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . B 2 5.907 -42.131 -14.415 1 92.57 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . B 2 4.945 -41.574 -12.142 1 89.61 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . B 2 4.653 -40.178 -12.222 1 87.29 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . B 2 3.334 -39.88 -11.519 1 85.63 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . B 2 3.263 -38.481 -11.227 1 84.48 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . B 2 2.114 -40.227 -12.367 1 84.64 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . B 2 1.261 -41.146 -11.674 1 84.57 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . B 2 1.412 -38.905 -12.626 1 83.91 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . B 2 -0.013 -39.01 -12.534 1 83.75 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . B 2 1.968 -37.976 -11.557 1 82.97 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . B 2 2.037 -36.569 -12.024 1 82.52 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . B 2 2.681 -36.115 -13.116 1 82.41 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . B 2 2.53 -34.77 -13.241 1 82.24 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . B 2 1.778 -34.347 -12.211 1 82.35 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . B 2 1.241 -33.047 -11.737 1 82.37 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . B 2 1.499 -31.915 -12.427 1 82.29 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . B 2 0.496 -33.043 -10.604 1 82.43 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . B 2 0.239 -34.182 -9.918 1 82.35 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . B 2 0.696 -35.392 -10.295 1 82.26 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . B 2 1.456 -35.539 -11.41 1 82.43 ? C4 ATP 1 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #