data_3HMO # _model_server_result.job_id AAVJBzkZEfsrnoUFpjr5Fw _model_server_result.datetime_utc '2024-12-02 05:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":813}' # _entry.id 3HMO # _exptl.entry_id 3HMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HMO _cell.length_a 70.94 _cell.length_b 103.88 _cell.length_c 111.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -70.94 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 3HMO _atom_sites.fract_transf_matrix[1][1] 0.014096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7PE A 1 1153 1153 7PE 7PE . C 3 STU A 1 1 1 STU STU . D 4 IPA A 1 810 1 IPA IPA . E 4 IPA A 1 2 2 IPA IPA . F 4 IPA A 1 3 3 IPA IPA . G 5 GOL A 1 811 1 GOL GOL . H 5 GOL A 1 812 2 GOL GOL . I 5 GOL A 1 813 3 GOL GOL . J 5 GOL A 1 4 4 GOL GOL . K 6 HOH A 1 5 5 HOH HOH . K 6 HOH A 2 8 8 HOH HOH . K 6 HOH A 3 9 9 HOH HOH . K 6 HOH A 4 10 10 HOH HOH . K 6 HOH A 5 11 11 HOH HOH . K 6 HOH A 6 13 13 HOH HOH . K 6 HOH A 7 14 14 HOH HOH . K 6 HOH A 8 15 15 HOH HOH . K 6 HOH A 9 17 17 HOH HOH . K 6 HOH A 10 18 18 HOH HOH . K 6 HOH A 11 19 19 HOH HOH . K 6 HOH A 12 23 23 HOH HOH . K 6 HOH A 13 24 24 HOH HOH . K 6 HOH A 14 25 25 HOH HOH . K 6 HOH A 15 26 26 HOH HOH . K 6 HOH A 16 29 29 HOH HOH . K 6 HOH A 17 32 32 HOH HOH . K 6 HOH A 18 34 34 HOH HOH . K 6 HOH A 19 35 35 HOH HOH . K 6 HOH A 20 37 37 HOH HOH . K 6 HOH A 21 38 38 HOH HOH . K 6 HOH A 22 39 39 HOH HOH . K 6 HOH A 23 40 40 HOH HOH . K 6 HOH A 24 41 41 HOH HOH . K 6 HOH A 25 42 42 HOH HOH . K 6 HOH A 26 43 43 HOH HOH . K 6 HOH A 27 53 53 HOH HOH . K 6 HOH A 28 55 55 HOH HOH . K 6 HOH A 29 57 57 HOH HOH . K 6 HOH A 30 59 59 HOH HOH . K 6 HOH A 31 64 64 HOH HOH . K 6 HOH A 32 70 70 HOH HOH . K 6 HOH A 33 72 72 HOH HOH . K 6 HOH A 34 73 73 HOH HOH . K 6 HOH A 35 75 75 HOH HOH . K 6 HOH A 36 78 78 HOH HOH . K 6 HOH A 37 81 81 HOH HOH . K 6 HOH A 38 83 83 HOH HOH . K 6 HOH A 39 84 84 HOH HOH . K 6 HOH A 40 88 88 HOH HOH . K 6 HOH A 41 90 90 HOH HOH . K 6 HOH A 42 91 91 HOH HOH . K 6 HOH A 43 92 92 HOH HOH . K 6 HOH A 44 93 93 HOH HOH . K 6 HOH A 45 94 94 HOH HOH . K 6 HOH A 46 95 95 HOH HOH . K 6 HOH A 47 96 96 HOH HOH . K 6 HOH A 48 97 97 HOH HOH . K 6 HOH A 49 98 98 HOH HOH . K 6 HOH A 50 99 99 HOH HOH . K 6 HOH A 51 100 100 HOH HOH . K 6 HOH A 52 101 101 HOH HOH . K 6 HOH A 53 102 102 HOH HOH . K 6 HOH A 54 103 103 HOH HOH . K 6 HOH A 55 104 104 HOH HOH . K 6 HOH A 56 105 105 HOH HOH . K 6 HOH A 57 106 106 HOH HOH . K 6 HOH A 58 107 107 HOH HOH . K 6 HOH A 59 108 108 HOH HOH . K 6 HOH A 60 109 109 HOH HOH . K 6 HOH A 61 110 110 HOH HOH . K 6 HOH A 62 111 111 HOH HOH . K 6 HOH A 63 112 112 HOH HOH . K 6 HOH A 64 113 113 HOH HOH . K 6 HOH A 65 114 114 HOH HOH . K 6 HOH A 66 115 115 HOH HOH . K 6 HOH A 67 116 116 HOH HOH . K 6 HOH A 68 117 117 HOH HOH . K 6 HOH A 69 118 118 HOH HOH . K 6 HOH A 70 119 119 HOH HOH . K 6 HOH A 71 120 120 HOH HOH . K 6 HOH A 72 121 121 HOH HOH . K 6 HOH A 73 122 122 HOH HOH . K 6 HOH A 74 123 123 HOH HOH . K 6 HOH A 75 124 124 HOH HOH . K 6 HOH A 76 125 125 HOH HOH . K 6 HOH A 77 126 126 HOH HOH . K 6 HOH A 78 127 127 HOH HOH . K 6 HOH A 79 128 128 HOH HOH . K 6 HOH A 80 129 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -11.597 -9.304 -35.809 1 54.47 ? C1 GOL 813 A 1 HETATM 2 O O1 GOL . . . I 5 -11.357 -8.033 -36.371 1 54.02 ? O1 GOL 813 A 1 HETATM 3 C C2 GOL . . . I 5 -10.973 -10.398 -36.676 1 54.86 ? C2 GOL 813 A 1 HETATM 4 O O2 GOL . . . I 5 -11.927 -10.909 -37.585 1 54.91 ? O2 GOL 813 A 1 HETATM 5 C C3 GOL . . . I 5 -10.438 -11.521 -35.789 1 54.57 ? C3 GOL 813 A 1 HETATM 6 O O3 GOL . . . I 5 -10.235 -12.707 -36.528 1 54.24 ? O3 GOL 813 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 499 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #