data_3HNE # _model_server_result.job_id bQkzauAHq6RGsdz3nJcqVA _model_server_result.datetime_utc '2024-12-01 08:21:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":807}' # _entry.id 3HNE # _exptl.entry_id 3HNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HNE _cell.length_a 69.147 _cell.length_b 114.372 _cell.length_c 222.474 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 801 1_555 C O2B TTP . A TTP 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 D MG MG . A MG 801 1_555 C O3G TTP . A TTP 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 I MG MG . B MG 802 1_555 H O2A TTP . B TTP 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc4 I MG MG . B MG 802 1_555 H O2B TTP . B TTP 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc5 I MG MG . B MG 802 1_555 H O3G TTP . B TTP 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc6 I MG MG . B MG 802 1_555 H O1G TTP . B TTP 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc7 K MG MG . B MG 803 1_555 J O3B ATP . B ATP 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc8 L MG MG . B MG 804 1_555 J O2B ATP . B ATP 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3HNE _atom_sites.fract_transf_matrix[1][1] 0.014462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TTP A 1 806 806 TTP TTP . D 3 MG A 1 801 801 MG MG . E 4 SO4 A 1 808 808 SO4 SO4 . F 4 SO4 A 1 809 809 SO4 SO4 . G 4 SO4 A 1 812 812 SO4 SO4 . H 2 TTP B 1 805 805 TTP TTP . I 3 MG B 1 802 802 MG MG . J 5 ATP B 1 807 807 ATP ATP . K 3 MG B 1 803 803 MG MG . L 3 MG B 1 804 804 MG MG . M 4 SO4 B 1 810 810 SO4 SO4 . N 4 SO4 B 1 811 811 SO4 SO4 . O 4 SO4 B 1 813 813 SO4 SO4 . P 6 HOH A 1 901 901 HOH HOH . P 6 HOH A 2 902 902 HOH HOH . P 6 HOH A 3 903 903 HOH HOH . P 6 HOH A 4 904 904 HOH HOH . P 6 HOH A 5 905 905 HOH HOH . P 6 HOH A 6 906 906 HOH HOH . P 6 HOH A 7 907 907 HOH HOH . P 6 HOH A 8 908 908 HOH HOH . P 6 HOH A 9 909 909 HOH HOH . P 6 HOH A 10 910 910 HOH HOH . P 6 HOH A 11 911 911 HOH HOH . P 6 HOH A 12 912 912 HOH HOH . P 6 HOH A 13 913 913 HOH HOH . P 6 HOH A 14 914 914 HOH HOH . P 6 HOH A 15 915 915 HOH HOH . P 6 HOH A 16 916 916 HOH HOH . P 6 HOH A 17 917 917 HOH HOH . P 6 HOH A 18 918 918 HOH HOH . P 6 HOH A 19 919 919 HOH HOH . P 6 HOH A 20 920 920 HOH HOH . P 6 HOH A 21 938 938 HOH HOH . P 6 HOH A 22 939 939 HOH HOH . P 6 HOH A 23 940 940 HOH HOH . P 6 HOH A 24 941 941 HOH HOH . P 6 HOH A 25 942 942 HOH HOH . P 6 HOH A 26 943 943 HOH HOH . P 6 HOH A 27 944 944 HOH HOH . Q 6 HOH B 1 921 921 HOH HOH . Q 6 HOH B 2 922 922 HOH HOH . Q 6 HOH B 3 923 923 HOH HOH . Q 6 HOH B 4 924 924 HOH HOH . Q 6 HOH B 5 925 925 HOH HOH . Q 6 HOH B 6 926 926 HOH HOH . Q 6 HOH B 7 927 927 HOH HOH . Q 6 HOH B 8 928 928 HOH HOH . Q 6 HOH B 9 929 929 HOH HOH . Q 6 HOH B 10 930 930 HOH HOH . Q 6 HOH B 11 931 931 HOH HOH . Q 6 HOH B 12 932 932 HOH HOH . Q 6 HOH B 13 933 933 HOH HOH . Q 6 HOH B 14 934 934 HOH HOH . Q 6 HOH B 15 935 935 HOH HOH . Q 6 HOH B 16 936 936 HOH HOH . Q 6 HOH B 17 937 937 HOH HOH . Q 6 HOH B 18 945 945 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 5 -32.59 -37.591 -62.413 1 75.95 ? PG ATP 807 B 1 HETATM 2 O O1G ATP . . . J 5 -32.772 -36.952 -63.783 1 74.11 ? O1G ATP 807 B 1 HETATM 3 O O2G ATP . . . J 5 -32.396 -39.079 -62.69 1 73.7 ? O2G ATP 807 B 1 HETATM 4 O O3G ATP . . . J 5 -33.511 -37.2 -61.24 1 72.37 ? O3G ATP 807 B 1 HETATM 5 P PB ATP . . . J 5 -30.508 -35.682 -61.234 1 76.91 ? PB ATP 807 B 1 HETATM 6 O O1B ATP . . . J 5 -30.563 -35.587 -59.704 1 75.69 ? O1B ATP 807 B 1 HETATM 7 O O2B ATP . . . J 5 -29.131 -35.734 -61.867 1 76.19 ? O2B ATP 807 B 1 HETATM 8 O O3B ATP . . . J 5 -31.13 -37.078 -61.858 1 76.46 ? O3B ATP 807 B 1 HETATM 9 P PA ATP . . . J 5 -30.421 -32.916 -61.582 1 69.73 ? PA ATP 807 B 1 HETATM 10 O O1A ATP . . . J 5 -28.955 -33.206 -61.755 1 72.25 ? O1A ATP 807 B 1 HETATM 11 O O2A ATP . . . J 5 -30.836 -31.85 -62.58 1 66.7 ? O2A ATP 807 B 1 HETATM 12 O O3A ATP . . . J 5 -31.197 -34.33 -61.825 1 72.93 ? O3A ATP 807 B 1 HETATM 13 O O5' ATP . . . J 5 -30.666 -32.572 -59.991 1 65.87 ? O5' ATP 807 B 1 HETATM 14 C C5' ATP . . . J 5 -31.445 -33.316 -59.051 1 65.02 ? C5' ATP 807 B 1 HETATM 15 C C4' ATP . . . J 5 -32.784 -32.644 -58.599 1 68.71 ? C4' ATP 807 B 1 HETATM 16 O O4' ATP . . . J 5 -33.671 -32.065 -59.608 1 70.1 ? O4' ATP 807 B 1 HETATM 17 C C3' ATP . . . J 5 -33.739 -33.616 -57.887 1 69.14 ? C3' ATP 807 B 1 HETATM 18 O O3' ATP . . . J 5 -34.547 -32.896 -56.959 1 69.39 ? O3' ATP 807 B 1 HETATM 19 C C2' ATP . . . J 5 -34.695 -34.126 -58.951 1 68.9 ? C2' ATP 807 B 1 HETATM 20 O O2' ATP . . . J 5 -35.917 -34.662 -58.458 1 65.2 ? O2' ATP 807 B 1 HETATM 21 C C1' ATP . . . J 5 -34.914 -32.84 -59.732 1 69.61 ? C1' ATP 807 B 1 HETATM 22 N N9 ATP . . . J 5 -35.277 -33.209 -61.138 1 69.87 ? N9 ATP 807 B 1 HETATM 23 C C8 ATP . . . J 5 -34.473 -33.806 -62.046 1 68.99 ? C8 ATP 807 B 1 HETATM 24 N N7 ATP . . . J 5 -35.119 -33.967 -63.227 1 69.63 ? N7 ATP 807 B 1 HETATM 25 C C5 ATP . . . J 5 -36.373 -33.491 -63.092 1 69.68 ? C5 ATP 807 B 1 HETATM 26 C C6 ATP . . . J 5 -37.586 -33.354 -63.947 1 69.22 ? C6 ATP 807 B 1 HETATM 27 N N6 ATP . . . J 5 -37.647 -33.777 -65.229 1 68.94 ? N6 ATP 807 B 1 HETATM 28 N N1 ATP . . . J 5 -38.669 -32.788 -63.39 1 68.84 ? N1 ATP 807 B 1 HETATM 29 C C2 ATP . . . J 5 -38.663 -32.358 -62.121 1 68.92 ? C2 ATP 807 B 1 HETATM 30 N N3 ATP . . . J 5 -37.616 -32.44 -61.29 1 68.77 ? N3 ATP 807 B 1 HETATM 31 C C4 ATP . . . J 5 -36.463 -32.996 -61.707 1 69.55 ? C4 ATP 807 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #