data_3HNL # _model_server_result.job_id Dx_DpgAGDEH9col1psLIxA _model_server_result.datetime_utc '2024-11-14 16:04:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":107}' # _entry.id 3HNL # _exptl.entry_id 3HNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HNL _cell.length_a 66.165 _cell.length_b 87.045 _cell.length_c 80.765 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 40.3825 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 7 A MET 7 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 H CU CU . B CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 A NE2 HIS 73 A HIS 73 1_555 D CU CU . A CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 A NE2 HIS 77 A HIS 77 1_555 D CU CU . A CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 D CU CU . A CU 107 1_555 I O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 D CU CU . A CU 107 1_555 B NE2 HIS 63 B HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc8 I O HOH . A HOH 202 1_555 H CU CU . B CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 B SD MET 7 B MET 7 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc10 B NE2 HIS 73 B HIS 73 1_555 H CU CU . B CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc11 B NE2 HIS 77 B HIS 77 1_555 H CU CU . B CU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc12 B NE2 HIS 102 B HIS 102 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc13 H CU CU . B CU 107 1_555 J O HOH . B HOH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HNL _atom_sites.fract_transf_matrix[1][1] 0.015114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 150 150 HEM HEM . D 3 CU A 1 107 1 CU CU . E 4 CL A 1 108 3 CL CL . F 4 CL A 1 109 4 CL CL . G 2 HEM B 1 150 150 HEM HEM . H 3 CU B 1 107 2 CU CU . I 5 HOH A 1 110 110 HOH HOH . I 5 HOH A 2 111 111 HOH HOH . I 5 HOH A 3 112 112 HOH HOH . I 5 HOH A 4 113 113 HOH HOH . I 5 HOH A 5 114 114 HOH HOH . I 5 HOH A 6 115 115 HOH HOH . I 5 HOH A 7 116 116 HOH HOH . I 5 HOH A 8 117 1 HOH HOH . I 5 HOH A 9 118 2 HOH HOH . I 5 HOH A 10 119 3 HOH HOH . I 5 HOH A 11 120 4 HOH HOH . I 5 HOH A 12 121 5 HOH HOH . I 5 HOH A 13 122 6 HOH HOH . I 5 HOH A 14 123 7 HOH HOH . I 5 HOH A 15 124 8 HOH HOH . I 5 HOH A 16 125 9 HOH HOH . I 5 HOH A 17 126 10 HOH HOH . I 5 HOH A 18 127 11 HOH HOH . I 5 HOH A 19 128 12 HOH HOH . I 5 HOH A 20 129 13 HOH HOH . I 5 HOH A 21 130 14 HOH HOH . I 5 HOH A 22 131 15 HOH HOH . I 5 HOH A 23 132 16 HOH HOH . I 5 HOH A 24 133 133 HOH HOH . I 5 HOH A 25 134 17 HOH HOH . I 5 HOH A 26 135 18 HOH HOH . I 5 HOH A 27 136 19 HOH HOH . I 5 HOH A 28 137 20 HOH HOH . I 5 HOH A 29 138 21 HOH HOH . I 5 HOH A 30 139 25 HOH HOH . I 5 HOH A 31 140 28 HOH HOH . I 5 HOH A 32 141 141 HOH HOH . I 5 HOH A 33 142 142 HOH HOH . I 5 HOH A 34 143 143 HOH HOH . I 5 HOH A 35 144 144 HOH HOH . I 5 HOH A 36 145 145 HOH HOH . I 5 HOH A 37 146 146 HOH HOH . I 5 HOH A 38 147 147 HOH HOH . I 5 HOH A 39 148 148 HOH HOH . I 5 HOH A 40 149 149 HOH HOH . I 5 HOH A 41 151 151 HOH HOH . I 5 HOH A 42 152 152 HOH HOH . I 5 HOH A 43 153 153 HOH HOH . I 5 HOH A 44 154 154 HOH HOH . I 5 HOH A 45 155 155 HOH HOH . I 5 HOH A 46 156 156 HOH HOH . I 5 HOH A 47 157 157 HOH HOH . I 5 HOH A 48 158 158 HOH HOH . I 5 HOH A 49 159 159 HOH HOH . I 5 HOH A 50 160 160 HOH HOH . I 5 HOH A 51 161 161 HOH HOH . I 5 HOH A 52 162 30 HOH HOH . I 5 HOH A 53 163 32 HOH HOH . I 5 HOH A 54 164 33 HOH HOH . I 5 HOH A 55 165 34 HOH HOH . I 5 HOH A 56 166 35 HOH HOH . I 5 HOH A 57 167 36 HOH HOH . I 5 HOH A 58 168 37 HOH HOH . I 5 HOH A 59 169 38 HOH HOH . I 5 HOH A 60 170 39 HOH HOH . I 5 HOH A 61 171 40 HOH HOH . I 5 HOH A 62 172 41 HOH HOH . I 5 HOH A 63 173 42 HOH HOH . I 5 HOH A 64 174 43 HOH HOH . I 5 HOH A 65 175 44 HOH HOH . I 5 HOH A 66 176 45 HOH HOH . I 5 HOH A 67 177 46 HOH HOH . I 5 HOH A 68 178 178 HOH HOH . I 5 HOH A 69 179 109 HOH HOH . I 5 HOH A 70 180 180 HOH HOH . I 5 HOH A 71 181 181 HOH HOH . I 5 HOH A 72 182 182 HOH HOH . I 5 HOH A 73 183 183 HOH HOH . I 5 HOH A 74 184 184 HOH HOH . I 5 HOH A 75 185 185 HOH HOH . I 5 HOH A 76 186 186 HOH HOH . I 5 HOH A 77 187 187 HOH HOH . I 5 HOH A 78 188 188 HOH HOH . I 5 HOH A 79 189 189 HOH HOH . I 5 HOH A 80 190 47 HOH HOH . I 5 HOH A 81 191 48 HOH HOH . I 5 HOH A 82 192 49 HOH HOH . I 5 HOH A 83 193 193 HOH HOH . I 5 HOH A 84 194 194 HOH HOH . I 5 HOH A 85 195 195 HOH HOH . I 5 HOH A 86 196 196 HOH HOH . I 5 HOH A 87 197 197 HOH HOH . I 5 HOH A 88 198 198 HOH HOH . I 5 HOH A 89 199 199 HOH HOH . I 5 HOH A 90 200 200 HOH HOH . I 5 HOH A 91 201 50 HOH HOH . I 5 HOH A 92 202 75 HOH HOH . I 5 HOH A 93 203 77 HOH HOH . I 5 HOH A 94 204 78 HOH HOH . I 5 HOH A 95 205 79 HOH HOH . I 5 HOH A 96 206 80 HOH HOH . I 5 HOH A 97 207 207 HOH HOH . I 5 HOH A 98 208 81 HOH HOH . I 5 HOH A 99 209 82 HOH HOH . I 5 HOH A 100 210 83 HOH HOH . I 5 HOH A 101 211 84 HOH HOH . I 5 HOH A 102 212 85 HOH HOH . I 5 HOH A 103 213 87 HOH HOH . I 5 HOH A 104 214 89 HOH HOH . I 5 HOH A 105 215 90 HOH HOH . I 5 HOH A 106 216 91 HOH HOH . I 5 HOH A 107 217 92 HOH HOH . I 5 HOH A 108 218 93 HOH HOH . I 5 HOH A 109 219 94 HOH HOH . I 5 HOH A 110 220 95 HOH HOH . I 5 HOH A 111 221 98 HOH HOH . I 5 HOH A 112 222 99 HOH HOH . I 5 HOH A 113 223 100 HOH HOH . I 5 HOH A 114 224 106 HOH HOH . I 5 HOH A 115 225 107 HOH HOH . I 5 HOH A 116 226 108 HOH HOH . I 5 HOH A 117 227 150 HOH HOH . I 5 HOH A 118 228 56 HOH HOH . I 5 HOH A 119 229 168 HOH HOH . J 5 HOH B 1 108 22 HOH HOH . J 5 HOH B 2 110 23 HOH HOH . J 5 HOH B 3 111 24 HOH HOH . J 5 HOH B 4 112 26 HOH HOH . J 5 HOH B 5 113 27 HOH HOH . J 5 HOH B 6 114 29 HOH HOH . J 5 HOH B 7 115 31 HOH HOH . J 5 HOH B 8 116 51 HOH HOH . J 5 HOH B 9 117 117 HOH HOH . J 5 HOH B 10 118 118 HOH HOH . J 5 HOH B 11 119 119 HOH HOH . J 5 HOH B 12 120 120 HOH HOH . J 5 HOH B 13 121 121 HOH HOH . J 5 HOH B 14 122 122 HOH HOH . J 5 HOH B 15 123 123 HOH HOH . J 5 HOH B 16 124 124 HOH HOH . J 5 HOH B 17 125 125 HOH HOH . J 5 HOH B 18 126 126 HOH HOH . J 5 HOH B 19 127 127 HOH HOH . J 5 HOH B 20 128 128 HOH HOH . J 5 HOH B 21 129 129 HOH HOH . J 5 HOH B 22 130 130 HOH HOH . J 5 HOH B 23 131 131 HOH HOH . J 5 HOH B 24 132 132 HOH HOH . J 5 HOH B 25 133 52 HOH HOH . J 5 HOH B 26 134 134 HOH HOH . J 5 HOH B 27 135 135 HOH HOH . J 5 HOH B 28 136 136 HOH HOH . J 5 HOH B 29 137 137 HOH HOH . J 5 HOH B 30 138 138 HOH HOH . J 5 HOH B 31 139 139 HOH HOH . J 5 HOH B 32 140 140 HOH HOH . J 5 HOH B 33 141 53 HOH HOH . J 5 HOH B 34 142 54 HOH HOH . J 5 HOH B 35 143 55 HOH HOH . J 5 HOH B 36 145 57 HOH HOH . J 5 HOH B 37 146 58 HOH HOH . J 5 HOH B 38 147 59 HOH HOH . J 5 HOH B 39 148 60 HOH HOH . J 5 HOH B 40 149 61 HOH HOH . J 5 HOH B 41 151 62 HOH HOH . J 5 HOH B 42 152 63 HOH HOH . J 5 HOH B 43 153 64 HOH HOH . J 5 HOH B 44 154 65 HOH HOH . J 5 HOH B 45 155 66 HOH HOH . J 5 HOH B 46 156 67 HOH HOH . J 5 HOH B 47 157 68 HOH HOH . J 5 HOH B 48 158 69 HOH HOH . J 5 HOH B 49 159 70 HOH HOH . J 5 HOH B 50 160 71 HOH HOH . J 5 HOH B 51 161 72 HOH HOH . J 5 HOH B 52 162 162 HOH HOH . J 5 HOH B 53 163 163 HOH HOH . J 5 HOH B 54 164 164 HOH HOH . J 5 HOH B 55 165 165 HOH HOH . J 5 HOH B 56 166 166 HOH HOH . J 5 HOH B 57 167 167 HOH HOH . J 5 HOH B 58 169 169 HOH HOH . J 5 HOH B 59 170 170 HOH HOH . J 5 HOH B 60 171 171 HOH HOH . J 5 HOH B 61 172 172 HOH HOH . J 5 HOH B 62 173 173 HOH HOH . J 5 HOH B 63 174 174 HOH HOH . J 5 HOH B 64 175 175 HOH HOH . J 5 HOH B 65 176 176 HOH HOH . J 5 HOH B 66 177 177 HOH HOH . J 5 HOH B 67 178 73 HOH HOH . J 5 HOH B 68 179 179 HOH HOH . J 5 HOH B 69 180 76 HOH HOH . J 5 HOH B 70 181 86 HOH HOH . J 5 HOH B 71 182 88 HOH HOH . J 5 HOH B 72 183 96 HOH HOH . J 5 HOH B 73 184 97 HOH HOH . J 5 HOH B 74 185 101 HOH HOH . J 5 HOH B 75 186 102 HOH HOH . J 5 HOH B 76 187 103 HOH HOH . J 5 HOH B 77 188 104 HOH HOH . J 5 HOH B 78 189 105 HOH HOH . J 5 HOH B 79 190 190 HOH HOH . J 5 HOH B 80 191 191 HOH HOH . J 5 HOH B 81 192 192 HOH HOH . J 5 HOH B 82 193 74 HOH HOH . J 5 HOH B 83 201 201 HOH HOH . J 5 HOH B 84 202 202 HOH HOH . J 5 HOH B 85 203 203 HOH HOH . J 5 HOH B 86 204 204 HOH HOH . J 5 HOH B 87 205 205 HOH HOH . J 5 HOH B 88 206 206 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 4.829 _atom_site.Cartn_y 0.443 _atom_site.Cartn_z 29.361 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 107 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #