data_3HNZ # _model_server_result.job_id j8y_k_AlQDgucl4mhaXT1A _model_server_result.datetime_utc '2024-10-15 06:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hnz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 3HNZ # _exptl.entry_id 3HNZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PLATENSIMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HNZ _cell.length_a 74.665 _cell.length_b 74.665 _cell.length_c 146.274 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HNZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 111.9975 64.661787 48.758 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H27 N O7' _chem_comp.formula_weight 441.474 _chem_comp.id PMN _chem_comp.mon_nstd_flag . _chem_comp.name PLATENSIMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C10 PMN sing 260 n n O16 C15 PMN sing 261 n n O19 C5 PMN doub 262 n n O20 C1 PMN doub 263 n n O30 C25 PMN sing 264 n n O30 HO30 PMN sing 265 n n O31 C23 PMN sing 266 n n O31 HO31 PMN sing 267 n n O32 C21 PMN doub 268 n n O33 C21 PMN sing 269 n n O33 HO33 PMN sing 270 n n N28 C1 PMN sing 271 n n N28 C24 PMN sing 272 n n N28 HN28 PMN sing 273 n n C1 C2 PMN sing 274 n n C2 C3 PMN sing 275 n n C2 H21 PMN sing 276 n n C2 H22 PMN sing 277 n n C3 C4 PMN sing 278 n n C3 H31 PMN sing 279 n n C3 H32 PMN sing 280 n n C4 C5 PMN sing 281 n n C4 C9 PMN sing 282 n n C4 C18 PMN sing 283 n n C5 C6 PMN sing 284 n n C6 C7 PMN doub 285 n n C6 H6 PMN sing 286 n n C7 C8 PMN sing 287 n n C7 H7 PMN sing 288 n n C8 C9 PMN sing 289 n n C8 C13 PMN sing 290 n n C8 C14 PMN sing 291 n n C9 C10 PMN sing 292 n n C9 H9 PMN sing 293 n n C10 C11 PMN sing 294 n n C10 H10 PMN sing 295 n n C11 C12 PMN sing 296 n n C11 H111 PMN sing 297 n n C11 H112 PMN sing 298 n n C12 C13 PMN sing 299 n n C12 C15 PMN sing 300 n n C12 H12 PMN sing 301 n n C13 H131 PMN sing 302 n n C13 H132 PMN sing 303 n n C14 C15 PMN sing 304 n n C14 H141 PMN sing 305 n n C14 H142 PMN sing 306 n n C15 C17 PMN sing 307 n n C17 H171 PMN sing 308 n n C17 H172 PMN sing 309 n n C17 H173 PMN sing 310 n n C18 H181 PMN sing 311 n n C18 H182 PMN sing 312 n n C18 H183 PMN sing 313 n n C21 C22 PMN sing 314 n n C22 C23 PMN sing 315 n y C22 C27 PMN doub 316 n y C23 C24 PMN doub 317 n y C24 C25 PMN sing 318 n y C25 C26 PMN doub 319 n y C26 C27 PMN sing 320 n y C26 H26 PMN sing 321 n n C27 H27 PMN sing 322 n n # _atom_sites.entry_id 3HNZ _atom_sites.fract_transf_matrix[1][1] 0.013393 _atom_sites.fract_transf_matrix[1][2] 0.007733 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMN A 1 413 1 PMN PMN . C 3 HOH A 1 414 1 HOH HOH . C 3 HOH A 2 415 2 HOH HOH . C 3 HOH A 3 416 3 HOH HOH . C 3 HOH A 4 417 4 HOH HOH . C 3 HOH A 5 418 5 HOH HOH . C 3 HOH A 6 419 6 HOH HOH . C 3 HOH A 7 420 7 HOH HOH . C 3 HOH A 8 421 8 HOH HOH . C 3 HOH A 9 422 9 HOH HOH . C 3 HOH A 10 423 10 HOH HOH . C 3 HOH A 11 424 11 HOH HOH . C 3 HOH A 12 425 12 HOH HOH . C 3 HOH A 13 426 13 HOH HOH . C 3 HOH A 14 427 14 HOH HOH . C 3 HOH A 15 428 15 HOH HOH . C 3 HOH A 16 429 16 HOH HOH . C 3 HOH A 17 430 17 HOH HOH . C 3 HOH A 18 431 18 HOH HOH . C 3 HOH A 19 432 19 HOH HOH . C 3 HOH A 20 433 20 HOH HOH . C 3 HOH A 21 434 21 HOH HOH . C 3 HOH A 22 435 22 HOH HOH . C 3 HOH A 23 436 23 HOH HOH . C 3 HOH A 24 437 24 HOH HOH . C 3 HOH A 25 438 25 HOH HOH . C 3 HOH A 26 439 26 HOH HOH . C 3 HOH A 27 440 27 HOH HOH . C 3 HOH A 28 441 28 HOH HOH . C 3 HOH A 29 442 29 HOH HOH . C 3 HOH A 30 443 30 HOH HOH . C 3 HOH A 31 444 31 HOH HOH . C 3 HOH A 32 445 32 HOH HOH . C 3 HOH A 33 446 33 HOH HOH . C 3 HOH A 34 447 34 HOH HOH . C 3 HOH A 35 448 35 HOH HOH . C 3 HOH A 36 449 36 HOH HOH . C 3 HOH A 37 450 37 HOH HOH . C 3 HOH A 38 451 38 HOH HOH . C 3 HOH A 39 452 39 HOH HOH . C 3 HOH A 40 453 40 HOH HOH . C 3 HOH A 41 454 41 HOH HOH . C 3 HOH A 42 455 42 HOH HOH . C 3 HOH A 43 456 43 HOH HOH . C 3 HOH A 44 457 44 HOH HOH . C 3 HOH A 45 458 45 HOH HOH . C 3 HOH A 46 459 46 HOH HOH . C 3 HOH A 47 460 47 HOH HOH . C 3 HOH A 48 461 48 HOH HOH . C 3 HOH A 49 462 49 HOH HOH . C 3 HOH A 50 463 50 HOH HOH . C 3 HOH A 51 464 51 HOH HOH . C 3 HOH A 52 465 52 HOH HOH . C 3 HOH A 53 466 53 HOH HOH . C 3 HOH A 54 467 54 HOH HOH . C 3 HOH A 55 468 55 HOH HOH . C 3 HOH A 56 469 56 HOH HOH . C 3 HOH A 57 470 57 HOH HOH . C 3 HOH A 58 471 58 HOH HOH . C 3 HOH A 59 472 59 HOH HOH . C 3 HOH A 60 473 60 HOH HOH . C 3 HOH A 61 474 61 HOH HOH . C 3 HOH A 62 475 62 HOH HOH . C 3 HOH A 63 476 63 HOH HOH . C 3 HOH A 64 477 64 HOH HOH . C 3 HOH A 65 478 65 HOH HOH . C 3 HOH A 66 479 66 HOH HOH . C 3 HOH A 67 480 67 HOH HOH . C 3 HOH A 68 481 68 HOH HOH . C 3 HOH A 69 482 69 HOH HOH . C 3 HOH A 70 483 70 HOH HOH . C 3 HOH A 71 484 71 HOH HOH . C 3 HOH A 72 485 72 HOH HOH . C 3 HOH A 73 486 73 HOH HOH . C 3 HOH A 74 487 74 HOH HOH . C 3 HOH A 75 488 75 HOH HOH . C 3 HOH A 76 489 76 HOH HOH . C 3 HOH A 77 490 77 HOH HOH . C 3 HOH A 78 491 78 HOH HOH . C 3 HOH A 79 492 79 HOH HOH . C 3 HOH A 80 493 80 HOH HOH . C 3 HOH A 81 494 81 HOH HOH . C 3 HOH A 82 495 82 HOH HOH . C 3 HOH A 83 496 83 HOH HOH . C 3 HOH A 84 497 84 HOH HOH . C 3 HOH A 85 498 85 HOH HOH . C 3 HOH A 86 499 86 HOH HOH . C 3 HOH A 87 500 87 HOH HOH . C 3 HOH A 88 501 88 HOH HOH . C 3 HOH A 89 502 89 HOH HOH . C 3 HOH A 90 503 90 HOH HOH . C 3 HOH A 91 504 91 HOH HOH . C 3 HOH A 92 505 92 HOH HOH . C 3 HOH A 93 506 93 HOH HOH . C 3 HOH A 94 507 94 HOH HOH . C 3 HOH A 95 508 95 HOH HOH . C 3 HOH A 96 509 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 PMN . . . B 2 62.386 34.577 5.618 1 49.16 ? O16 PMN 413 A 1 HETATM 2 O O19 PMN . . . B 2 60.137 31.527 0.693 1 53.2 ? O19 PMN 413 A 1 HETATM 3 O O20 PMN . . . B 2 60.84 28.314 3.982 1 49.94 ? O20 PMN 413 A 1 HETATM 4 O O30 PMN . . . B 2 63.644 27.649 7.092 1 41.29 ? O30 PMN 413 A 1 HETATM 5 O O31 PMN . . . B 2 59.009 28.764 6.486 1 48.68 ? O31 PMN 413 A 1 HETATM 6 O O32 PMN . . . B 2 57.372 27.426 7.998 1 44.27 ? O32 PMN 413 A 1 HETATM 7 O O33 PMN . . . B 2 58.381 25.964 9.569 1 43.08 ? O33 PMN 413 A 1 HETATM 8 N N28 PMN . . . B 2 61.497 29.253 5.758 1 43.46 ? N28 PMN 413 A 1 HETATM 9 C C1 PMN . . . B 2 61.291 29.319 4.486 1 45.06 ? C1 PMN 413 A 1 HETATM 10 C C2 PMN . . . B 2 61.61 30.596 3.734 1 39.94 ? C2 PMN 413 A 1 HETATM 11 C C3 PMN . . . B 2 60.403 31.396 3.938 1 41.02 ? C3 PMN 413 A 1 HETATM 12 C C4 PMN . . . B 2 60.241 32.663 3.011 1 48.86 ? C4 PMN 413 A 1 HETATM 13 C C5 PMN . . . B 2 60.569 32.431 1.468 1 51.93 ? C5 PMN 413 A 1 HETATM 14 C C6 PMN . . . B 2 61.481 33.383 0.904 1 51.57 ? C6 PMN 413 A 1 HETATM 15 C C7 PMN . . . B 2 62.035 34.41 1.503 1 49.75 ? C7 PMN 413 A 1 HETATM 16 C C8 PMN . . . B 2 61.806 34.861 2.85 1 45.99 ? C8 PMN 413 A 1 HETATM 17 C C9 PMN . . . B 2 61.319 33.625 3.677 1 50.85 ? C9 PMN 413 A 1 HETATM 18 C C10 PMN . . . B 2 61.093 34.094 5.112 1 51.01 ? C10 PMN 413 A 1 HETATM 19 C C11 PMN . . . B 2 60.282 35.426 5.091 1 53.06 ? C11 PMN 413 A 1 HETATM 20 C C12 PMN . . . B 2 61.23 36.441 4.421 1 48.56 ? C12 PMN 413 A 1 HETATM 21 C C13 PMN . . . B 2 60.898 36.104 2.944 1 45.29 ? C13 PMN 413 A 1 HETATM 22 C C14 PMN . . . B 2 63.091 35.426 3.493 1 41.1 ? C14 PMN 413 A 1 HETATM 23 C C15 PMN . . . B 2 62.619 35.845 4.864 1 43.8 ? C15 PMN 413 A 1 HETATM 24 C C17 PMN . . . B 2 63.529 36.624 5.823 1 40.4 ? C17 PMN 413 A 1 HETATM 25 C C18 PMN . . . B 2 58.753 33.22 2.896 1 44.07 ? C18 PMN 413 A 1 HETATM 26 C C21 PMN . . . B 2 58.315 26.81 8.549 1 42.95 ? C21 PMN 413 A 1 HETATM 27 C C22 PMN . . . B 2 59.675 27.076 8.095 1 41.09 ? C22 PMN 413 A 1 HETATM 28 C C23 PMN . . . B 2 59.952 28.019 7.121 1 45.14 ? C23 PMN 413 A 1 HETATM 29 C C24 PMN . . . B 2 61.305 28.239 6.756 1 43.52 ? C24 PMN 413 A 1 HETATM 30 C C25 PMN . . . B 2 62.32 27.499 7.378 1 41.63 ? C25 PMN 413 A 1 HETATM 31 C C26 PMN . . . B 2 61.961 26.568 8.328 1 40.35 ? C26 PMN 413 A 1 HETATM 32 C C27 PMN . . . B 2 60.679 26.357 8.686 1 39.59 ? C27 PMN 413 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #