data_3HO1 # _model_server_result.job_id fnZSX0NZ_F6CFrMJo82eBQ _model_server_result.datetime_utc '2024-11-15 19:16:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ho1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":22}' # _entry.id 3HO1 # _exptl.entry_id 3HO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.91 _cell.angle_gamma 90 _cell.entry_id 3HO1 _cell.length_a 122.928 _cell.length_b 118.531 _cell.length_c 59.533 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 B N1 DG 2 X DG 2 1_555 C N3 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 2 X DG 2 1_555 C O2 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 2 X DG 2 1_555 C N4 C 11 Y C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 3 X DA 3 1_555 C N3 U 10 Y U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 3 X DA 3 1_555 C O4 U 10 Y U 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 4 X DG 4 1_555 C N3 C 9 Y C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 4 X DG 4 1_555 C O2 C 9 Y C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 4 X DG 4 1_555 C N4 C 9 Y C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 5 X DG 5 1_555 C N3 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 5 X DG 5 1_555 C O2 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 5 X DG 5 1_555 C N4 C 8 Y C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 6 X DT 6 1_555 C N1 A 7 Y A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 6 X DT 6 1_555 C N6 A 7 Y A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DA 7 X DA 7 1_555 C N3 U 6 Y U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N6 DA 7 X DA 7 1_555 C O4 U 6 Y U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DG 8 X DG 8 1_555 C N3 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 8 X DG 8 1_555 C O2 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 8 X DG 8 1_555 C N4 C 5 Y C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 9 X DT 9 1_555 C N1 A 4 Y A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 9 X DT 9 1_555 C N6 A 4 Y A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DA 10 X DA 10 1_555 C N3 U 3 Y U 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N6 DA 10 X DA 10 1_555 C O4 U 3 Y U 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DG 11 X DG 11 1_555 C N3 C 2 Y C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N2 DG 11 X DG 11 1_555 C O2 C 2 Y C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O6 DG 11 X DG 11 1_555 C N4 C 2 Y C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 12 X DG 12 1_555 C N3 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 12 X DG 12 1_555 C O2 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 12 X DG 12 1_555 C N4 C 1 Y C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HO1 _atom_sites.fract_transf_matrix[1][1] 0.008135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003778 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG X 1 22 1 MG MG . E 5 HOH A 1 686 1 HOH HOH . E 5 HOH A 2 687 2 HOH HOH . E 5 HOH A 3 688 3 HOH HOH . E 5 HOH A 4 689 5 HOH HOH . E 5 HOH A 5 690 7 HOH HOH . E 5 HOH A 6 691 8 HOH HOH . E 5 HOH A 7 692 9 HOH HOH . E 5 HOH A 8 693 10 HOH HOH . E 5 HOH A 9 694 11 HOH HOH . E 5 HOH A 10 695 12 HOH HOH . E 5 HOH A 11 696 13 HOH HOH . E 5 HOH A 12 697 18 HOH HOH . E 5 HOH A 13 698 19 HOH HOH . E 5 HOH A 14 699 22 HOH HOH . E 5 HOH A 15 700 23 HOH HOH . E 5 HOH A 16 701 24 HOH HOH . E 5 HOH A 17 702 27 HOH HOH . E 5 HOH A 18 703 28 HOH HOH . E 5 HOH A 19 704 29 HOH HOH . E 5 HOH A 20 705 32 HOH HOH . E 5 HOH A 21 706 33 HOH HOH . E 5 HOH A 22 707 34 HOH HOH . E 5 HOH A 23 708 63 HOH HOH . E 5 HOH A 24 709 64 HOH HOH . E 5 HOH A 25 710 65 HOH HOH . E 5 HOH A 26 711 67 HOH HOH . E 5 HOH A 27 712 68 HOH HOH . E 5 HOH A 28 713 69 HOH HOH . E 5 HOH A 29 714 70 HOH HOH . E 5 HOH A 30 715 72 HOH HOH . E 5 HOH A 31 716 74 HOH HOH . E 5 HOH A 32 717 75 HOH HOH . E 5 HOH A 33 718 76 HOH HOH . E 5 HOH A 34 719 77 HOH HOH . E 5 HOH A 35 720 78 HOH HOH . E 5 HOH A 36 721 80 HOH HOH . E 5 HOH A 37 722 82 HOH HOH . E 5 HOH A 38 723 84 HOH HOH . E 5 HOH A 39 724 88 HOH HOH . E 5 HOH A 40 725 90 HOH HOH . E 5 HOH A 41 726 93 HOH HOH . E 5 HOH A 42 727 95 HOH HOH . E 5 HOH A 43 728 97 HOH HOH . E 5 HOH A 44 729 100 HOH HOH . E 5 HOH A 45 730 101 HOH HOH . E 5 HOH A 46 731 102 HOH HOH . E 5 HOH A 47 732 105 HOH HOH . E 5 HOH A 48 733 106 HOH HOH . E 5 HOH A 49 734 108 HOH HOH . E 5 HOH A 50 735 109 HOH HOH . E 5 HOH A 51 736 110 HOH HOH . E 5 HOH A 52 737 112 HOH HOH . E 5 HOH A 53 738 115 HOH HOH . E 5 HOH A 54 739 120 HOH HOH . E 5 HOH A 55 740 124 HOH HOH . E 5 HOH A 56 741 125 HOH HOH . E 5 HOH A 57 742 127 HOH HOH . E 5 HOH A 58 743 128 HOH HOH . E 5 HOH A 59 744 129 HOH HOH . E 5 HOH A 60 745 130 HOH HOH . E 5 HOH A 61 746 132 HOH HOH . E 5 HOH A 62 747 134 HOH HOH . E 5 HOH A 63 748 135 HOH HOH . E 5 HOH A 64 749 138 HOH HOH . E 5 HOH A 65 750 139 HOH HOH . E 5 HOH A 66 751 140 HOH HOH . E 5 HOH A 67 752 142 HOH HOH . E 5 HOH A 68 753 145 HOH HOH . E 5 HOH A 69 754 146 HOH HOH . E 5 HOH A 70 755 147 HOH HOH . E 5 HOH A 71 756 149 HOH HOH . E 5 HOH A 72 757 150 HOH HOH . E 5 HOH A 73 758 154 HOH HOH . E 5 HOH A 74 759 155 HOH HOH . E 5 HOH A 75 760 157 HOH HOH . E 5 HOH A 76 761 159 HOH HOH . E 5 HOH A 77 762 160 HOH HOH . E 5 HOH A 78 763 161 HOH HOH . E 5 HOH A 79 764 162 HOH HOH . E 5 HOH A 80 765 163 HOH HOH . E 5 HOH A 81 766 164 HOH HOH . E 5 HOH A 82 767 165 HOH HOH . E 5 HOH A 83 768 166 HOH HOH . E 5 HOH A 84 769 167 HOH HOH . F 5 HOH X 1 71 71 HOH HOH . F 5 HOH X 2 104 104 HOH HOH . F 5 HOH X 3 141 141 HOH HOH . F 5 HOH X 4 153 153 HOH HOH . G 5 HOH Y 1 14 14 HOH HOH . G 5 HOH Y 2 16 16 HOH HOH . G 5 HOH Y 3 17 17 HOH HOH . G 5 HOH Y 4 94 94 HOH HOH . G 5 HOH Y 5 99 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -32.336 _atom_site.Cartn_y 28.137 _atom_site.Cartn_z -26.336 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 22 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #