data_3HO8 # _model_server_result.job_id 1C_RKlP4-4eA6HqkreKF0g _model_server_result.datetime_utc '2024-11-13 17:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ho8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 3HO8 # _exptl.entry_id 3HO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HO8 _cell.length_a 96.586 _cell.length_b 164.466 _cell.length_c 373.346 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 542 D ASP 572 1_555 H MN MN . D MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc2 D OD1 ASP 542 B ASP 572 1_555 M MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 102 n y N1A C6A COA doub 103 n y C2A N3A COA doub 104 n y C2A H2A COA sing 105 n n N3A C4A COA sing 106 n y C4A C5A COA doub 107 n y C4A N9A COA sing 108 n y C5A C6A COA sing 109 n y C5A N7A COA sing 110 n y C6A N6A COA sing 111 n n N6A H61A COA sing 112 n n N6A H62A COA sing 113 n n N7A C8A COA doub 114 n y C8A N9A COA sing 115 n y C8A H8A COA sing 116 n n N9A C1B COA sing 117 n n C1B C2B COA sing 118 n n C1B O4B COA sing 119 n n C1B H1B COA sing 120 n n C2B O2B COA sing 121 n n C2B C3B COA sing 122 n n C2B H2B COA sing 123 n n O2B HO2A COA sing 124 n n C3B O3B COA sing 125 n n C3B C4B COA sing 126 n n C3B H3B COA sing 127 n n O3B P3B COA sing 128 n n P3B O7A COA doub 129 n n P3B O8A COA sing 130 n n P3B O9A COA sing 131 n n O8A HOA8 COA sing 132 n n O9A HOA9 COA sing 133 n n C4B O4B COA sing 134 n n C4B C5B COA sing 135 n n C4B H4B COA sing 136 n n C5B O5B COA sing 137 n n C5B H51A COA sing 138 n n C5B H52A COA sing 139 n n O5B P1A COA sing 140 n n P1A O1A COA doub 141 n n P1A O2A COA sing 142 n n P1A O3A COA sing 143 n n O2A HOA2 COA sing 144 n n O3A P2A COA sing 145 n n P2A O4A COA doub 146 n n P2A O5A COA sing 147 n n P2A O6A COA sing 148 n n O5A HOA5 COA sing 149 n n O6A CCP COA sing 150 n n CBP CCP COA sing 151 n n CBP CDP COA sing 152 n n CBP CEP COA sing 153 n n CBP CAP COA sing 154 n n CCP H121 COA sing 155 n n CCP H122 COA sing 156 n n CDP H131 COA sing 157 n n CDP H132 COA sing 158 n n CDP H133 COA sing 159 n n CEP H141 COA sing 160 n n CEP H142 COA sing 161 n n CEP H143 COA sing 162 n n CAP OAP COA sing 163 n n CAP C9P COA sing 164 n n CAP H10 COA sing 165 n n OAP HO1 COA sing 166 n n C9P O9P COA doub 167 n n C9P N8P COA sing 168 n n N8P C7P COA sing 169 n n N8P HN8 COA sing 170 n n C7P C6P COA sing 171 n n C7P H71 COA sing 172 n n C7P H72 COA sing 173 n n C6P C5P COA sing 174 n n C6P H61 COA sing 175 n n C6P H62 COA sing 176 n n C5P O5P COA doub 177 n n C5P N4P COA sing 178 n n N4P C3P COA sing 179 n n N4P HN4 COA sing 180 n n C3P C2P COA sing 181 n n C3P H31 COA sing 182 n n C3P H32 COA sing 183 n n C2P S1P COA sing 184 n n C2P H21 COA sing 185 n n C2P H22 COA sing 186 n n S1P HS1 COA sing 187 n n # _atom_sites.entry_id 3HO8 _atom_sites.fract_transf_matrix[1][1] 0.010353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA A 1 2001 2001 COA COA . F 3 MN A 1 2002 2002 MN MN . G 2 COA D 1 2001 2001 COA COA . H 3 MN D 1 2002 2002 MN MN . I 2 COA C 1 2001 2001 COA COA . J 3 MN C 1 2002 2002 MN MN . K 4 BTI C 1 2000 2000 BTI BTI . L 2 COA B 1 2001 2001 COA COA . M 3 MN B 1 2002 2002 MN MN . N 4 BTI B 1 2000 2000 BTI BTI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 2 3.35 -47.309 27.983 1 48.92 ? N1A COA 2001 A 1 HETATM 2 C C2A COA . . . E 2 3.44 -46.098 28.515 1 49.48 ? C2A COA 2001 A 1 HETATM 3 N N3A COA . . . E 2 4.512 -45.717 29.194 1 50.03 ? N3A COA 2001 A 1 HETATM 4 C C4A COA . . . E 2 5.549 -46.567 29.361 1 50.09 ? C4A COA 2001 A 1 HETATM 5 C C5A COA . . . E 2 5.485 -47.842 28.82 1 49.83 ? C5A COA 2001 A 1 HETATM 6 C C6A COA . . . E 2 4.346 -48.199 28.124 1 49.39 ? C6A COA 2001 A 1 HETATM 7 N N6A COA . . . E 2 4.258 -49.415 27.601 1 50.44 ? N6A COA 2001 A 1 HETATM 8 N N7A COA . . . E 2 6.612 -48.481 29.123 1 50.23 ? N7A COA 2001 A 1 HETATM 9 C C8A COA . . . E 2 7.367 -47.634 29.828 1 49.82 ? C8A COA 2001 A 1 HETATM 10 N N9A COA . . . E 2 6.721 -46.472 29.979 1 48.97 ? N9A COA 2001 A 1 HETATM 11 C C1B COA . . . E 2 7.204 -45.289 30.695 1 47.47 ? C1B COA 2001 A 1 HETATM 12 C C2B COA . . . E 2 7.947 -45.676 31.993 1 46.75 ? C2B COA 2001 A 1 HETATM 13 O O2B COA . . . E 2 7.306 -45.084 33.133 1 46.45 ? O2B COA 2001 A 1 HETATM 14 C C3B COA . . . E 2 9.355 -45.119 31.803 1 45.95 ? C3B COA 2001 A 1 HETATM 15 O O3B COA . . . E 2 9.783 -44.352 32.933 1 45.39 ? O3B COA 2001 A 1 HETATM 16 P P3B COA . . . E 2 10.01 -44.998 34.387 1 45.47 ? P3B COA 2001 A 1 HETATM 17 O O7A COA . . . E 2 10.82 -46.364 34.173 1 46.42 ? O7A COA 2001 A 1 HETATM 18 O O8A COA . . . E 2 11.13 -44.105 35.135 1 44.88 ? O8A COA 2001 A 1 HETATM 19 O O9A COA . . . E 2 8.754 -45.131 35.162 1 44.81 ? O9A COA 2001 A 1 HETATM 20 C C4B COA . . . E 2 9.166 -44.177 30.612 1 46.46 ? C4B COA 2001 A 1 HETATM 21 O O4B COA . . . E 2 8.18 -44.829 29.801 1 47.01 ? O4B COA 2001 A 1 HETATM 22 C C5B COA . . . E 2 10.437 -44.034 29.766 1 45.33 ? C5B COA 2001 A 1 HETATM 23 O O5B COA . . . E 2 10.922 -45.294 29.342 1 45.34 ? O5B COA 2001 A 1 HETATM 24 P P1A COA . . . E 2 12.423 -45.393 28.823 1 46.6 ? P1A COA 2001 A 1 HETATM 25 O O1A COA . . . E 2 12.712 -44.076 28.235 1 47.99 ? O1A COA 2001 A 1 HETATM 26 O O2A COA . . . E 2 12.566 -46.597 27.991 1 47.67 ? O2A COA 2001 A 1 HETATM 27 O O3A COA . . . E 2 13.347 -45.644 30.148 1 46.66 ? O3A COA 2001 A 1 HETATM 28 P P2A COA . . . E 2 14.501 -46.814 30.209 1 48.4 ? P2A COA 2001 A 1 HETATM 29 O O4A COA . . . E 2 15.171 -46.778 31.538 1 48.96 ? O4A COA 2001 A 1 HETATM 30 O O5A COA . . . E 2 15.317 -46.736 28.978 1 48.48 ? O5A COA 2001 A 1 HETATM 31 O O6A COA . . . E 2 13.662 -48.205 30.212 1 47.9 ? O6A COA 2001 A 1 HETATM 32 C CBP COA . . . E 2 12.727 -50.263 29.451 1 49.69 ? CBP COA 2001 A 1 HETATM 33 C CCP COA . . . E 2 13.888 -49.292 29.318 1 47.96 ? CCP COA 2001 A 1 HETATM 34 C CDP COA . . . E 2 12.758 -50.865 30.862 1 50.55 ? CDP COA 2001 A 1 HETATM 35 C CEP COA . . . E 2 12.881 -51.385 28.43 1 49.02 ? CEP COA 2001 A 1 HETATM 36 C CAP COA . . . E 2 11.393 -49.478 29.209 1 50.95 ? CAP COA 2001 A 1 HETATM 37 O OAP COA . . . E 2 11.154 -49.316 27.796 1 49.82 ? OAP COA 2001 A 1 HETATM 38 C C9P COA . . . E 2 10.14 -50.131 29.868 1 52.01 ? C9P COA 2001 A 1 HETATM 39 O O9P COA . . . E 2 9.772 -49.784 30.995 1 50.39 ? O9P COA 2001 A 1 HETATM 40 N N8P COA . . . E 2 9.554 -51.068 29.097 1 53.05 ? N8P COA 2001 A 1 HETATM 41 C C7P COA . . . E 2 8.341 -51.869 29.373 1 53.58 ? C7P COA 2001 A 1 HETATM 42 C C6P COA . . . E 2 8.18 -52.388 30.81 1 55.71 ? C6P COA 2001 A 1 HETATM 43 C C5P COA . . . E 2 9.423 -53.045 31.405 1 56.38 ? C5P COA 2001 A 1 HETATM 44 O O5P COA . . . E 2 10.022 -52.474 32.31 1 55.88 ? O5P COA 2001 A 1 HETATM 45 N N4P COA . . . E 2 9.738 -54.251 30.906 1 57.85 ? N4P COA 2001 A 1 HETATM 46 C C3P COA . . . E 2 10.896 -55.061 31.345 1 58.42 ? C3P COA 2001 A 1 HETATM 47 C C2P COA . . . E 2 10.583 -55.822 32.648 1 59.01 ? C2P COA 2001 A 1 HETATM 48 S S1P COA . . . E 2 9.058 -56.847 32.618 1 59.48 ? S1P COA 2001 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #