data_3HO8 # _model_server_result.job_id YsO2NIs-b2v5_gst3kndPw _model_server_result.datetime_utc '2024-11-13 17:29:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ho8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2001}' # _entry.id 3HO8 # _exptl.entry_id 3HO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HO8 _cell.length_a 96.586 _cell.length_b 164.466 _cell.length_c 373.346 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 542 D ASP 572 1_555 H MN MN . D MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc2 D OD1 ASP 542 B ASP 572 1_555 M MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 102 n y N1A C6A COA doub 103 n y C2A N3A COA doub 104 n y C2A H2A COA sing 105 n n N3A C4A COA sing 106 n y C4A C5A COA doub 107 n y C4A N9A COA sing 108 n y C5A C6A COA sing 109 n y C5A N7A COA sing 110 n y C6A N6A COA sing 111 n n N6A H61A COA sing 112 n n N6A H62A COA sing 113 n n N7A C8A COA doub 114 n y C8A N9A COA sing 115 n y C8A H8A COA sing 116 n n N9A C1B COA sing 117 n n C1B C2B COA sing 118 n n C1B O4B COA sing 119 n n C1B H1B COA sing 120 n n C2B O2B COA sing 121 n n C2B C3B COA sing 122 n n C2B H2B COA sing 123 n n O2B HO2A COA sing 124 n n C3B O3B COA sing 125 n n C3B C4B COA sing 126 n n C3B H3B COA sing 127 n n O3B P3B COA sing 128 n n P3B O7A COA doub 129 n n P3B O8A COA sing 130 n n P3B O9A COA sing 131 n n O8A HOA8 COA sing 132 n n O9A HOA9 COA sing 133 n n C4B O4B COA sing 134 n n C4B C5B COA sing 135 n n C4B H4B COA sing 136 n n C5B O5B COA sing 137 n n C5B H51A COA sing 138 n n C5B H52A COA sing 139 n n O5B P1A COA sing 140 n n P1A O1A COA doub 141 n n P1A O2A COA sing 142 n n P1A O3A COA sing 143 n n O2A HOA2 COA sing 144 n n O3A P2A COA sing 145 n n P2A O4A COA doub 146 n n P2A O5A COA sing 147 n n P2A O6A COA sing 148 n n O5A HOA5 COA sing 149 n n O6A CCP COA sing 150 n n CBP CCP COA sing 151 n n CBP CDP COA sing 152 n n CBP CEP COA sing 153 n n CBP CAP COA sing 154 n n CCP H121 COA sing 155 n n CCP H122 COA sing 156 n n CDP H131 COA sing 157 n n CDP H132 COA sing 158 n n CDP H133 COA sing 159 n n CEP H141 COA sing 160 n n CEP H142 COA sing 161 n n CEP H143 COA sing 162 n n CAP OAP COA sing 163 n n CAP C9P COA sing 164 n n CAP H10 COA sing 165 n n OAP HO1 COA sing 166 n n C9P O9P COA doub 167 n n C9P N8P COA sing 168 n n N8P C7P COA sing 169 n n N8P HN8 COA sing 170 n n C7P C6P COA sing 171 n n C7P H71 COA sing 172 n n C7P H72 COA sing 173 n n C6P C5P COA sing 174 n n C6P H61 COA sing 175 n n C6P H62 COA sing 176 n n C5P O5P COA doub 177 n n C5P N4P COA sing 178 n n N4P C3P COA sing 179 n n N4P HN4 COA sing 180 n n C3P C2P COA sing 181 n n C3P H31 COA sing 182 n n C3P H32 COA sing 183 n n C2P S1P COA sing 184 n n C2P H21 COA sing 185 n n C2P H22 COA sing 186 n n S1P HS1 COA sing 187 n n # _atom_sites.entry_id 3HO8 _atom_sites.fract_transf_matrix[1][1] 0.010353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA A 1 2001 2001 COA COA . F 3 MN A 1 2002 2002 MN MN . G 2 COA D 1 2001 2001 COA COA . H 3 MN D 1 2002 2002 MN MN . I 2 COA C 1 2001 2001 COA COA . J 3 MN C 1 2002 2002 MN MN . K 4 BTI C 1 2000 2000 BTI BTI . L 2 COA B 1 2001 2001 COA COA . M 3 MN B 1 2002 2002 MN MN . N 4 BTI B 1 2000 2000 BTI BTI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . G 2 -7.706 28.754 28.444 1 47.37 ? N1A COA 2001 D 1 HETATM 2 C C2A COA . . . G 2 -7.607 27.611 29.086 1 46.69 ? C2A COA 2001 D 1 HETATM 3 N N3A COA . . . G 2 -8.59 27.16 29.839 1 47.61 ? N3A COA 2001 D 1 HETATM 4 C C4A COA . . . G 2 -9.732 27.842 29.981 1 48.35 ? C4A COA 2001 D 1 HETATM 5 C C5A COA . . . G 2 -9.877 29.046 29.326 1 48.81 ? C5A COA 2001 D 1 HETATM 6 C C6A COA . . . G 2 -8.82 29.492 28.542 1 49 ? C6A COA 2001 D 1 HETATM 7 N N6A COA . . . G 2 -8.903 30.652 27.894 1 50.78 ? N6A COA 2001 D 1 HETATM 8 N N7A COA . . . G 2 -11.078 29.535 29.637 1 49.17 ? N7A COA 2001 D 1 HETATM 9 C C8A COA . . . G 2 -11.673 28.661 30.458 1 49.11 ? C8A COA 2001 D 1 HETATM 10 N N9A COA . . . G 2 -10.845 27.63 30.68 1 48.68 ? N9A COA 2001 D 1 HETATM 11 C C1B COA . . . G 2 -11.12 26.436 31.527 1 48.28 ? C1B COA 2001 D 1 HETATM 12 C C2B COA . . . G 2 -11.715 26.721 32.944 1 47.94 ? C2B COA 2001 D 1 HETATM 13 O O2B COA . . . G 2 -11.065 25.946 33.969 1 45.45 ? O2B COA 2001 D 1 HETATM 14 C C3B COA . . . G 2 -13.185 26.319 32.801 1 48.2 ? C3B COA 2001 D 1 HETATM 15 O O3B COA . . . G 2 -13.721 25.643 33.948 1 47.57 ? O3B COA 2001 D 1 HETATM 16 P P3B COA . . . G 2 -13.685 26.293 35.428 1 47.96 ? P3B COA 2001 D 1 HETATM 17 O O7A COA . . . G 2 -14.337 27.743 35.302 1 48.87 ? O7A COA 2001 D 1 HETATM 18 O O8A COA . . . G 2 -14.744 25.504 36.287 1 46.98 ? O8A COA 2001 D 1 HETATM 19 O O9A COA . . . G 2 -12.336 26.246 36.036 1 48.59 ? O9A COA 2001 D 1 HETATM 20 C C4B COA . . . G 2 -13.132 25.338 31.629 1 49.42 ? C4B COA 2001 D 1 HETATM 21 O O4B COA . . . G 2 -12.145 25.849 30.727 1 48 ? O4B COA 2001 D 1 HETATM 22 C C5B COA . . . G 2 -14.44 25.404 30.856 1 51.32 ? C5B COA 2001 D 1 HETATM 23 O O5B COA . . . G 2 -14.71 26.743 30.435 1 52.98 ? O5B COA 2001 D 1 HETATM 24 P P1A COA . . . G 2 -16.223 27.125 30.091 1 54.67 ? P1A COA 2001 D 1 HETATM 25 O O1A COA . . . G 2 -16.923 25.961 29.523 1 54.21 ? O1A COA 2001 D 1 HETATM 26 O O2A COA . . . G 2 -16.147 28.389 29.335 1 55.18 ? O2A COA 2001 D 1 HETATM 27 O O3A COA . . . G 2 -16.954 27.403 31.495 1 54.63 ? O3A COA 2001 D 1 HETATM 28 P P2A COA . . . G 2 -18.435 28.018 31.442 1 54.54 ? P2A COA 2001 D 1 HETATM 29 O O4A COA . . . G 2 -18.986 28.302 32.792 1 54.3 ? O4A COA 2001 D 1 HETATM 30 O O5A COA . . . G 2 -19.197 27.157 30.522 1 54.86 ? O5A COA 2001 D 1 HETATM 31 O O6A COA . . . G 2 -18.139 29.415 30.654 1 55.61 ? O6A COA 2001 D 1 HETATM 32 C CBP COA . . . G 2 -17.424 31.697 30.134 1 55.95 ? CBP COA 2001 D 1 HETATM 33 C CCP COA . . . G 2 -17.822 30.701 31.239 1 55.49 ? CCP COA 2001 D 1 HETATM 34 C CDP COA . . . G 2 -17.298 33.098 30.726 1 56.5 ? CDP COA 2001 D 1 HETATM 35 C CEP COA . . . G 2 -18.523 31.719 29.065 1 56.56 ? CEP COA 2001 D 1 HETATM 36 C CAP COA . . . G 2 -16.097 31.224 29.439 1 55.41 ? CAP COA 2001 D 1 HETATM 37 O OAP COA . . . G 2 -15.711 32.046 28.31 1 56.5 ? OAP COA 2001 D 1 HETATM 38 C C9P COA . . . G 2 -14.897 31.06 30.387 1 54.29 ? C9P COA 2001 D 1 HETATM 39 O O9P COA . . . G 2 -14.763 30.023 31.023 1 53.86 ? O9P COA 2001 D 1 HETATM 40 N N8P COA . . . G 2 -14.01 32.056 30.367 1 54.07 ? N8P COA 2001 D 1 HETATM 41 C C7P COA . . . G 2 -12.784 32.087 31.185 1 54.9 ? C7P COA 2001 D 1 HETATM 42 C C6P COA . . . G 2 -12.955 33.075 32.362 1 55.44 ? C6P COA 2001 D 1 HETATM 43 C C5P COA . . . G 2 -13.232 34.51 31.868 1 54.9 ? C5P COA 2001 D 1 HETATM 44 O O5P COA . . . G 2 -12.352 35.137 31.27 1 54.25 ? O5P COA 2001 D 1 HETATM 45 N N4P COA . . . G 2 -14.459 34.99 32.144 1 53.7 ? N4P COA 2001 D 1 HETATM 46 C C3P COA . . . G 2 -14.913 36.343 31.75 1 51.93 ? C3P COA 2001 D 1 HETATM 47 C C2P COA . . . G 2 -14.622 37.382 32.857 1 51.54 ? C2P COA 2001 D 1 HETATM 48 S S1P COA . . . G 2 -13.032 37.154 33.756 1 50.36 ? S1P COA 2001 D 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #