data_3HOD # _model_server_result.job_id v-B5-RLQdIx-DwsntSie7A _model_server_result.datetime_utc '2024-11-22 09:08:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3HOD # _exptl.entry_id 3HOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.392 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(4-benzylphenoxy)-3-phenylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.83 _cell.angle_gamma 90 _cell.entry_id 3HOD _cell.length_a 93.707 _cell.length_b 62.222 _cell.length_c 119.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H20 O3' _chem_comp.formula_weight 332.392 _chem_comp.id ZZH _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(4-benzylphenoxy)-3-phenylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAG ZZH doub 348 n y CAK CAW ZZH sing 349 n y CAG CAD ZZH sing 350 n y CAD CAH ZZH doub 351 n y CAH CAL ZZH sing 352 n y CAL CAW ZZH doub 353 n y CAW CAR ZZH sing 354 n n CAR CAY ZZH sing 355 n n CAY CAT ZZH sing 356 n n CAY OAS ZZH sing 357 n n CAT OAB ZZH sing 358 n n CAT OAA ZZH doub 359 n n OAS CAX ZZH sing 360 n n CAX CAP ZZH doub 361 n y CAX CAO ZZH sing 362 n y CAP CAN ZZH sing 363 n y CAN CAV ZZH doub 364 n y CAO CAM ZZH doub 365 n y CAM CAV ZZH sing 366 n y CAV CAQ ZZH sing 367 n n CAQ CAU ZZH sing 368 n n CAU CAI ZZH doub 369 n y CAU CAJ ZZH sing 370 n y CAI CAE ZZH sing 371 n y CAE CAC ZZH doub 372 n y CAC CAF ZZH sing 373 n y CAF CAJ ZZH doub 374 n y CAK HAK ZZH sing 375 n n CAG HAG ZZH sing 376 n n CAD HAD ZZH sing 377 n n CAH HAH ZZH sing 378 n n CAL HAL ZZH sing 379 n n CAR HAR ZZH sing 380 n n CAR HARA ZZH sing 381 n n CAY HAY ZZH sing 382 n n OAB HOAB ZZH sing 383 n n CAP HAP ZZH sing 384 n n CAN HAN ZZH sing 385 n n CAO HAO ZZH sing 386 n n CAM HAM ZZH sing 387 n n CAQ HAQ ZZH sing 388 n n CAQ HAQA ZZH sing 389 n n CAI HAI ZZH sing 390 n n CAE HAE ZZH sing 391 n n CAC HAC ZZH sing 392 n n CAF HAF ZZH sing 393 n n CAJ HAJ ZZH sing 394 n n # _atom_sites.entry_id 3HOD _atom_sites.fract_transf_matrix[1][1] 0.010672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00243 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZZH A 1 1 1 ZZH ZZH . D 3 HOH A 1 2 2 HOH HOH . D 3 HOH A 2 5 5 HOH HOH . D 3 HOH A 3 6 6 HOH HOH . D 3 HOH A 4 7 7 HOH HOH . D 3 HOH A 5 8 8 HOH HOH . D 3 HOH A 6 11 11 HOH HOH . D 3 HOH A 7 12 12 HOH HOH . D 3 HOH A 8 13 13 HOH HOH . D 3 HOH A 9 14 14 HOH HOH . D 3 HOH A 10 15 15 HOH HOH . D 3 HOH A 11 17 17 HOH HOH . D 3 HOH A 12 19 19 HOH HOH . D 3 HOH A 13 26 26 HOH HOH . D 3 HOH A 14 27 27 HOH HOH . D 3 HOH A 15 28 28 HOH HOH . D 3 HOH A 16 29 29 HOH HOH . D 3 HOH A 17 33 33 HOH HOH . D 3 HOH A 18 34 34 HOH HOH . D 3 HOH A 19 35 35 HOH HOH . D 3 HOH A 20 36 36 HOH HOH . D 3 HOH A 21 37 37 HOH HOH . D 3 HOH A 22 38 38 HOH HOH . D 3 HOH A 23 41 41 HOH HOH . D 3 HOH A 24 42 42 HOH HOH . D 3 HOH A 25 43 43 HOH HOH . D 3 HOH A 26 44 44 HOH HOH . D 3 HOH A 27 45 45 HOH HOH . D 3 HOH A 28 47 47 HOH HOH . D 3 HOH A 29 48 48 HOH HOH . D 3 HOH A 30 51 51 HOH HOH . D 3 HOH A 31 54 54 HOH HOH . D 3 HOH A 32 55 55 HOH HOH . D 3 HOH A 33 57 57 HOH HOH . D 3 HOH A 34 58 58 HOH HOH . D 3 HOH A 35 59 59 HOH HOH . D 3 HOH A 36 61 61 HOH HOH . D 3 HOH A 37 62 62 HOH HOH . D 3 HOH A 38 65 65 HOH HOH . D 3 HOH A 39 66 66 HOH HOH . D 3 HOH A 40 70 70 HOH HOH . D 3 HOH A 41 71 71 HOH HOH . D 3 HOH A 42 72 72 HOH HOH . D 3 HOH A 43 73 73 HOH HOH . D 3 HOH A 44 75 75 HOH HOH . D 3 HOH A 45 76 76 HOH HOH . D 3 HOH A 46 78 78 HOH HOH . D 3 HOH A 47 79 79 HOH HOH . D 3 HOH A 48 80 80 HOH HOH . D 3 HOH A 49 81 81 HOH HOH . D 3 HOH A 50 82 82 HOH HOH . D 3 HOH A 51 84 84 HOH HOH . D 3 HOH A 52 85 85 HOH HOH . D 3 HOH A 53 89 89 HOH HOH . D 3 HOH A 54 90 90 HOH HOH . D 3 HOH A 55 92 92 HOH HOH . D 3 HOH A 56 93 93 HOH HOH . D 3 HOH A 57 95 95 HOH HOH . D 3 HOH A 58 96 96 HOH HOH . D 3 HOH A 59 97 97 HOH HOH . D 3 HOH A 60 99 99 HOH HOH . D 3 HOH A 61 100 100 HOH HOH . D 3 HOH A 62 101 101 HOH HOH . D 3 HOH A 63 103 103 HOH HOH . D 3 HOH A 64 104 104 HOH HOH . D 3 HOH A 65 105 105 HOH HOH . D 3 HOH A 66 106 106 HOH HOH . D 3 HOH A 67 107 107 HOH HOH . D 3 HOH A 68 109 109 HOH HOH . D 3 HOH A 69 112 112 HOH HOH . D 3 HOH A 70 119 119 HOH HOH . D 3 HOH A 71 121 121 HOH HOH . D 3 HOH A 72 124 124 HOH HOH . D 3 HOH A 73 126 126 HOH HOH . D 3 HOH A 74 127 127 HOH HOH . D 3 HOH A 75 130 130 HOH HOH . D 3 HOH A 76 131 131 HOH HOH . D 3 HOH A 77 132 132 HOH HOH . D 3 HOH A 78 134 134 HOH HOH . D 3 HOH A 79 136 136 HOH HOH . D 3 HOH A 80 138 138 HOH HOH . D 3 HOH A 81 140 140 HOH HOH . D 3 HOH A 82 146 146 HOH HOH . D 3 HOH A 83 147 147 HOH HOH . D 3 HOH A 84 151 151 HOH HOH . D 3 HOH A 85 155 155 HOH HOH . D 3 HOH A 86 159 159 HOH HOH . D 3 HOH A 87 161 161 HOH HOH . D 3 HOH A 88 163 163 HOH HOH . D 3 HOH A 89 165 165 HOH HOH . D 3 HOH A 90 166 166 HOH HOH . E 3 HOH B 1 1 1 HOH HOH . E 3 HOH B 2 3 3 HOH HOH . E 3 HOH B 3 4 4 HOH HOH . E 3 HOH B 4 9 9 HOH HOH . E 3 HOH B 5 10 10 HOH HOH . E 3 HOH B 6 16 16 HOH HOH . E 3 HOH B 7 18 18 HOH HOH . E 3 HOH B 8 20 20 HOH HOH . E 3 HOH B 9 21 21 HOH HOH . E 3 HOH B 10 22 22 HOH HOH . E 3 HOH B 11 23 23 HOH HOH . E 3 HOH B 12 24 24 HOH HOH . E 3 HOH B 13 25 25 HOH HOH . E 3 HOH B 14 30 30 HOH HOH . E 3 HOH B 15 31 31 HOH HOH . E 3 HOH B 16 32 32 HOH HOH . E 3 HOH B 17 39 39 HOH HOH . E 3 HOH B 18 40 40 HOH HOH . E 3 HOH B 19 46 46 HOH HOH . E 3 HOH B 20 49 49 HOH HOH . E 3 HOH B 21 50 50 HOH HOH . E 3 HOH B 22 52 52 HOH HOH . E 3 HOH B 23 53 53 HOH HOH . E 3 HOH B 24 56 56 HOH HOH . E 3 HOH B 25 60 60 HOH HOH . E 3 HOH B 26 63 63 HOH HOH . E 3 HOH B 27 64 64 HOH HOH . E 3 HOH B 28 67 67 HOH HOH . E 3 HOH B 29 68 68 HOH HOH . E 3 HOH B 30 69 69 HOH HOH . E 3 HOH B 31 74 74 HOH HOH . E 3 HOH B 32 77 77 HOH HOH . E 3 HOH B 33 83 83 HOH HOH . E 3 HOH B 34 86 86 HOH HOH . E 3 HOH B 35 87 87 HOH HOH . E 3 HOH B 36 88 88 HOH HOH . E 3 HOH B 37 91 91 HOH HOH . E 3 HOH B 38 94 94 HOH HOH . E 3 HOH B 39 98 98 HOH HOH . E 3 HOH B 40 102 102 HOH HOH . E 3 HOH B 41 108 108 HOH HOH . E 3 HOH B 42 110 110 HOH HOH . E 3 HOH B 43 111 111 HOH HOH . E 3 HOH B 44 113 113 HOH HOH . E 3 HOH B 45 114 114 HOH HOH . E 3 HOH B 46 115 115 HOH HOH . E 3 HOH B 47 116 116 HOH HOH . E 3 HOH B 48 117 117 HOH HOH . E 3 HOH B 49 118 118 HOH HOH . E 3 HOH B 50 120 120 HOH HOH . E 3 HOH B 51 122 122 HOH HOH . E 3 HOH B 52 123 123 HOH HOH . E 3 HOH B 53 125 125 HOH HOH . E 3 HOH B 54 128 128 HOH HOH . E 3 HOH B 55 129 129 HOH HOH . E 3 HOH B 56 133 133 HOH HOH . E 3 HOH B 57 135 135 HOH HOH . E 3 HOH B 58 137 137 HOH HOH . E 3 HOH B 59 139 139 HOH HOH . E 3 HOH B 60 141 141 HOH HOH . E 3 HOH B 61 142 142 HOH HOH . E 3 HOH B 62 143 143 HOH HOH . E 3 HOH B 63 144 144 HOH HOH . E 3 HOH B 64 145 145 HOH HOH . E 3 HOH B 65 148 148 HOH HOH . E 3 HOH B 66 149 149 HOH HOH . E 3 HOH B 67 150 150 HOH HOH . E 3 HOH B 68 152 152 HOH HOH . E 3 HOH B 69 153 153 HOH HOH . E 3 HOH B 70 154 154 HOH HOH . E 3 HOH B 71 156 156 HOH HOH . E 3 HOH B 72 157 157 HOH HOH . E 3 HOH B 73 158 158 HOH HOH . E 3 HOH B 74 160 160 HOH HOH . E 3 HOH B 75 162 162 HOH HOH . E 3 HOH B 76 164 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK ZZH . . . C 2 19.467 61.24 16.237 1 62.48 ? CAK ZZH 1 A 1 HETATM 2 C CAG ZZH . . . C 2 19.334 60.921 14.892 1 62.92 ? CAG ZZH 1 A 1 HETATM 3 C CAD ZZH . . . C 2 18.083 60.966 14.285 1 64.14 ? CAD ZZH 1 A 1 HETATM 4 C CAH ZZH . . . C 2 16.961 61.329 15.02 1 63.57 ? CAH ZZH 1 A 1 HETATM 5 C CAL ZZH . . . C 2 17.095 61.649 16.368 1 62.65 ? CAL ZZH 1 A 1 HETATM 6 C CAW ZZH . . . C 2 18.345 61.605 16.973 1 62.61 ? CAW ZZH 1 A 1 HETATM 7 C CAR ZZH . . . C 2 18.47 61.939 18.461 1 61.93 ? CAR ZZH 1 A 1 HETATM 8 C CAY ZZH . . . C 2 19.173 63.279 18.687 1 62.7 ? CAY ZZH 1 A 1 HETATM 9 C CAT ZZH . . . C 2 19.503 63.326 20.18 1 62.52 ? CAT ZZH 1 A 1 HETATM 10 O OAB ZZH . . . C 2 18.541 63.484 20.966 1 60.89 ? OAB ZZH 1 A 1 HETATM 11 O OAA ZZH . . . C 2 20.69 63.195 20.541 1 63 ? OAA ZZH 1 A 1 HETATM 12 O OAS ZZH . . . C 2 20.346 63.322 17.857 1 62.68 ? OAS ZZH 1 A 1 HETATM 13 C CAX ZZH . . . C 2 21.161 64.399 18.018 1 62.81 ? CAX ZZH 1 A 1 HETATM 14 C CAP ZZH . . . C 2 22.494 64.265 17.643 1 64.11 ? CAP ZZH 1 A 1 HETATM 15 C CAN ZZH . . . C 2 23.376 65.331 17.755 1 64.16 ? CAN ZZH 1 A 1 HETATM 16 C CAO ZZH . . . C 2 20.707 65.623 18.501 1 63.27 ? CAO ZZH 1 A 1 HETATM 17 C CAM ZZH . . . C 2 21.589 66.691 18.615 1 64.24 ? CAM ZZH 1 A 1 HETATM 18 C CAV ZZH . . . C 2 22.924 66.549 18.254 1 65.09 ? CAV ZZH 1 A 1 HETATM 19 C CAQ ZZH . . . C 2 23.85 67.66 18.36 1 68.18 ? CAQ ZZH 1 A 1 HETATM 20 C CAU ZZH . . . C 2 23.405 69.037 18.09 1 70.12 ? CAU ZZH 1 A 1 HETATM 21 C CAI ZZH . . . C 2 23.283 69.377 16.745 1 70.53 ? CAI ZZH 1 A 1 HETATM 22 C CAE ZZH . . . C 2 22.874 70.658 16.391 1 71.09 ? CAE ZZH 1 A 1 HETATM 23 C CAC ZZH . . . C 2 22.588 71.604 17.37 1 71.34 ? CAC ZZH 1 A 1 HETATM 24 C CAF ZZH . . . C 2 22.708 71.265 18.711 1 71.56 ? CAF ZZH 1 A 1 HETATM 25 C CAJ ZZH . . . C 2 23.113 69.981 19.062 1 71.65 ? CAJ ZZH 1 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #