data_3HP1
#
_model_server_result.job_id            VR-R7onWA-Fk5bOY2cqYBQ 
_model_server_result.datetime_utc      '2025-03-04 07:33:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3HP1 
#
_exptl.entry_id    3HP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HP1 
_cell.length_a            79.78 
_cell.length_b            79.78 
_cell.length_c            93.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 79.78 79.78 46.85 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3HP1 
_atom_sites.fract_transf_matrix[1][1]    0.012534 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012534 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 301 301 ADP ADP . 
C 3 LLT A 1 401 401 LLT LLT . 
D 4 HOH A 1 261 1 HOH HOH . 
D 4 HOH A 2 262 2 HOH HOH . 
D 4 HOH A 3 263 3 HOH HOH . 
D 4 HOH A 4 264 4 HOH HOH . 
D 4 HOH A 5 265 5 HOH HOH . 
D 4 HOH A 6 266 6 HOH HOH . 
D 4 HOH A 7 267 7 HOH HOH . 
D 4 HOH A 8 268 8 HOH HOH . 
D 4 HOH A 9 269 9 HOH HOH . 
D 4 HOH A 10 270 10 HOH HOH . 
D 4 HOH A 11 271 11 HOH HOH . 
D 4 HOH A 12 272 12 HOH HOH . 
D 4 HOH A 13 273 13 HOH HOH . 
D 4 HOH A 14 274 14 HOH HOH . 
D 4 HOH A 15 275 15 HOH HOH . 
D 4 HOH A 16 276 16 HOH HOH . 
D 4 HOH A 17 277 17 HOH HOH . 
D 4 HOH A 18 278 18 HOH HOH . 
D 4 HOH A 19 279 22 HOH HOH . 
D 4 HOH A 20 280 23 HOH HOH . 
D 4 HOH A 21 281 24 HOH HOH . 
D 4 HOH A 22 282 25 HOH HOH . 
D 4 HOH A 23 283 26 HOH HOH . 
D 4 HOH A 24 284 27 HOH HOH . 
D 4 HOH A 25 285 28 HOH HOH . 
D 4 HOH A 26 286 29 HOH HOH . 
D 4 HOH A 27 287 30 HOH HOH . 
D 4 HOH A 28 288 31 HOH HOH . 
D 4 HOH A 29 289 32 HOH HOH . 
D 4 HOH A 30 290 33 HOH HOH . 
D 4 HOH A 31 291 34 HOH HOH . 
D 4 HOH A 32 292 35 HOH HOH . 
D 4 HOH A 33 293 36 HOH HOH . 
D 4 HOH A 34 294 38 HOH HOH . 
D 4 HOH A 35 295 39 HOH HOH . 
D 4 HOH A 36 296 40 HOH HOH . 
D 4 HOH A 37 297 41 HOH HOH . 
D 4 HOH A 38 298 42 HOH HOH . 
D 4 HOH A 39 299 43 HOH HOH . 
D 4 HOH A 40 300 44 HOH HOH . 
D 4 HOH A 41 302 45 HOH HOH . 
D 4 HOH A 42 303 46 HOH HOH . 
D 4 HOH A 43 304 47 HOH HOH . 
D 4 HOH A 44 305 48 HOH HOH . 
D 4 HOH A 45 306 49 HOH HOH . 
D 4 HOH A 46 307 50 HOH HOH . 
D 4 HOH A 47 308 51 HOH HOH . 
D 4 HOH A 48 309 52 HOH HOH . 
D 4 HOH A 49 310 53 HOH HOH . 
D 4 HOH A 50 311 54 HOH HOH . 
D 4 HOH A 51 312 55 HOH HOH . 
D 4 HOH A 52 313 56 HOH HOH . 
D 4 HOH A 53 314 57 HOH HOH . 
D 4 HOH A 54 315 58 HOH HOH . 
D 4 HOH A 55 316 59 HOH HOH . 
D 4 HOH A 56 317 60 HOH HOH . 
D 4 HOH A 57 318 61 HOH HOH . 
D 4 HOH A 58 319 62 HOH HOH . 
D 4 HOH A 59 320 63 HOH HOH . 
D 4 HOH A 60 321 65 HOH HOH . 
D 4 HOH A 61 322 66 HOH HOH . 
D 4 HOH A 62 323 67 HOH HOH . 
D 4 HOH A 63 324 68 HOH HOH . 
D 4 HOH A 64 325 69 HOH HOH . 
D 4 HOH A 65 326 70 HOH HOH . 
D 4 HOH A 66 327 72 HOH HOH . 
D 4 HOH A 67 328 73 HOH HOH . 
D 4 HOH A 68 329 74 HOH HOH . 
D 4 HOH A 69 330 75 HOH HOH . 
D 4 HOH A 70 331 76 HOH HOH . 
D 4 HOH A 71 332 77 HOH HOH . 
D 4 HOH A 72 333 78 HOH HOH . 
D 4 HOH A 73 334 80 HOH HOH . 
D 4 HOH A 74 335 81 HOH HOH . 
D 4 HOH A 75 336 82 HOH HOH . 
D 4 HOH A 76 337 84 HOH HOH . 
D 4 HOH A 77 338 85 HOH HOH . 
D 4 HOH A 78 339 86 HOH HOH . 
D 4 HOH A 79 340 87 HOH HOH . 
D 4 HOH A 80 341 89 HOH HOH . 
D 4 HOH A 81 342 90 HOH HOH . 
D 4 HOH A 82 343 91 HOH HOH . 
D 4 HOH A 83 344 93 HOH HOH . 
D 4 HOH A 84 345 94 HOH HOH . 
D 4 HOH A 85 346 95 HOH HOH . 
D 4 HOH A 86 347 96 HOH HOH . 
D 4 HOH A 87 348 97 HOH HOH . 
D 4 HOH A 88 349 98 HOH HOH . 
D 4 HOH A 89 350 101 HOH HOH . 
D 4 HOH A 90 351 102 HOH HOH . 
D 4 HOH A 91 352 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 72.281 42.359 18.849 1 33.29 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . B 2 72.403 40.893 19.22 1 32.3 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . B 2 71.423 43.194 19.763 1 33.43 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . B 2 71.961 42.541 17.38 1 31.13 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . B 2 74.418 43.975 20.123 1 32.13 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . B 2 73.816 45.349 19.919 1 35.06 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . B 2 74.417 43.371 21.511 1 32.41 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . B 2 73.782 42.939 19.04 1 32.83 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . B 2 75.937 44.046 19.562 1 31.04 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . B 2 76.863 42.97 19.695 1 30.89 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . B 2 78.222 43.568 20.008 1 32.94 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . B 2 78.736 44.354 18.919 1 34.81 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . B 2 78.202 44.508 21.191 1 32.34 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . B 2 79.476 44.266 21.793 1 29.15 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . B 2 78.232 45.91 20.588 1 34.25 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . B 2 78.987 46.789 21.415 1 36.73 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . B 2 78.993 45.712 19.287 1 35.76 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . B 2 78.512 46.494 18.124 1 36.89 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . B 2 77.248 46.493 17.654 1 37.98 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . B 2 77.1 47.278 16.554 1 36.26 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . B 2 78.315 47.762 16.297 1 36.41 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . B 2 78.857 48.647 15.259 1 36.35 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . B 2 78.04 49.146 14.296 1 36.24 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . B 2 80.171 48.92 15.314 1 36.69 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . B 2 80.981 48.425 16.281 1 37.38 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . B 2 80.544 47.609 17.268 1 38.37 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . B 2 79.238 47.257 17.325 1 36.32 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#