data_3HPH # _model_server_result.job_id IP01MI04-pkccKHjdyfH2g _model_server_result.datetime_utc '2025-02-27 10:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":220}' # _entry.id 3HPH # _exptl.entry_id 3HPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.96 _cell.angle_gamma 90 _cell.entry_id 3HPH _cell.length_a 102.87 _cell.length_b 83.15 _cell.length_c 115.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 N N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 12 A HIS 12 1_555 I ZN ZN . A ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 A ND1 HIS 16 A HIS 16 1_555 I ZN ZN . A ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A SG CYS 40 A CYS 40 1_555 I ZN ZN . A ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc4 A SG CYS 43 A CYS 43 1_555 I ZN ZN . A ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 B NE2 HIS 12 B HIS 12 1_555 L ZN ZN . B ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 B ND1 HIS 16 B HIS 16 1_555 L ZN ZN . B ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 B SG CYS 40 B CYS 40 1_555 L ZN ZN . B ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 B SG CYS 43 B CYS 43 1_555 L ZN ZN . B ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc9 C NE2 HIS 12 C HIS 12 1_555 N ZN ZN . C ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc10 C ND1 HIS 16 C HIS 16 1_555 N ZN ZN . C ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc11 C SG CYS 40 C CYS 40 1_555 N ZN ZN . C ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc12 C SG CYS 43 C CYS 43 1_555 N ZN ZN . C ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc13 D NE2 HIS 12 D HIS 12 1_555 P ZN ZN . D ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc14 D ND1 HIS 16 D HIS 16 1_555 P ZN ZN . D ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc15 D SG CYS 40 D CYS 40 1_555 P ZN ZN . D ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc16 D SG CYS 43 D CYS 43 1_555 P ZN ZN . D ZN 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HPH _atom_sites.fract_transf_matrix[1][1] 0.009721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 220 1 ZN ZN . J 4 GOL A 1 221 2 GOL GOL . K 4 GOL A 1 222 3 GOL GOL . L 3 ZN B 1 220 2 ZN ZN . M 5 PO4 B 1 221 3 PO4 PO4 . N 3 ZN C 1 220 3 ZN ZN . O 4 GOL C 1 221 1 GOL GOL . P 3 ZN D 1 220 4 ZN ZN . Q 4 GOL D 1 221 4 GOL GOL . R 5 PO4 E 1 1 1 PO4 PO4 . S 5 PO4 H 1 2 2 PO4 PO4 . T 6 HOH A 1 223 5 HOH HOH . T 6 HOH A 2 224 11 HOH HOH . T 6 HOH A 3 225 12 HOH HOH . T 6 HOH A 4 226 24 HOH HOH . T 6 HOH A 5 227 35 HOH HOH . T 6 HOH A 6 228 44 HOH HOH . T 6 HOH A 7 229 51 HOH HOH . T 6 HOH A 8 230 58 HOH HOH . T 6 HOH A 9 231 59 HOH HOH . T 6 HOH A 10 232 60 HOH HOH . T 6 HOH A 11 233 62 HOH HOH . T 6 HOH A 12 234 63 HOH HOH . T 6 HOH A 13 235 66 HOH HOH . T 6 HOH A 14 236 69 HOH HOH . T 6 HOH A 15 237 88 HOH HOH . T 6 HOH A 16 238 89 HOH HOH . T 6 HOH A 17 239 92 HOH HOH . T 6 HOH A 18 240 93 HOH HOH . U 6 HOH B 1 222 1 HOH HOH . U 6 HOH B 2 223 3 HOH HOH . U 6 HOH B 3 224 7 HOH HOH . U 6 HOH B 4 225 9 HOH HOH . U 6 HOH B 5 226 15 HOH HOH . U 6 HOH B 6 227 16 HOH HOH . U 6 HOH B 7 228 19 HOH HOH . U 6 HOH B 8 229 21 HOH HOH . U 6 HOH B 9 230 22 HOH HOH . U 6 HOH B 10 231 31 HOH HOH . U 6 HOH B 11 233 37 HOH HOH . U 6 HOH B 12 234 40 HOH HOH . U 6 HOH B 13 235 42 HOH HOH . U 6 HOH B 14 236 49 HOH HOH . U 6 HOH B 15 237 50 HOH HOH . U 6 HOH B 16 238 55 HOH HOH . U 6 HOH B 17 239 61 HOH HOH . U 6 HOH B 18 240 70 HOH HOH . U 6 HOH B 19 241 74 HOH HOH . U 6 HOH B 20 242 84 HOH HOH . U 6 HOH B 21 243 86 HOH HOH . U 6 HOH B 22 244 94 HOH HOH . U 6 HOH B 23 245 97 HOH HOH . U 6 HOH B 24 246 100 HOH HOH . U 6 HOH B 25 247 101 HOH HOH . U 6 HOH B 26 248 102 HOH HOH . U 6 HOH B 27 249 108 HOH HOH . U 6 HOH B 28 250 109 HOH HOH . V 6 HOH C 1 222 2 HOH HOH . V 6 HOH C 2 223 6 HOH HOH . V 6 HOH C 3 224 8 HOH HOH . V 6 HOH C 4 225 13 HOH HOH . V 6 HOH C 5 226 14 HOH HOH . V 6 HOH C 6 227 17 HOH HOH . V 6 HOH C 7 228 18 HOH HOH . V 6 HOH C 8 229 20 HOH HOH . V 6 HOH C 9 230 23 HOH HOH . V 6 HOH C 10 231 26 HOH HOH . V 6 HOH C 11 232 32 HOH HOH . V 6 HOH C 12 233 34 HOH HOH . V 6 HOH C 13 234 36 HOH HOH . V 6 HOH C 14 235 38 HOH HOH . V 6 HOH C 15 236 39 HOH HOH . V 6 HOH C 16 237 41 HOH HOH . V 6 HOH C 17 238 56 HOH HOH . V 6 HOH C 18 239 71 HOH HOH . V 6 HOH C 19 240 72 HOH HOH . V 6 HOH C 20 241 73 HOH HOH . V 6 HOH C 21 242 75 HOH HOH . V 6 HOH C 22 243 79 HOH HOH . V 6 HOH C 23 244 80 HOH HOH . V 6 HOH C 24 245 81 HOH HOH . V 6 HOH C 25 246 82 HOH HOH . V 6 HOH C 26 247 83 HOH HOH . V 6 HOH C 27 248 95 HOH HOH . V 6 HOH C 28 249 96 HOH HOH . V 6 HOH C 29 250 99 HOH HOH . V 6 HOH C 30 251 103 HOH HOH . V 6 HOH C 31 252 104 HOH HOH . V 6 HOH C 32 253 105 HOH HOH . V 6 HOH C 33 254 106 HOH HOH . V 6 HOH C 34 255 27 HOH HOH . W 6 HOH D 1 222 10 HOH HOH . W 6 HOH D 2 223 25 HOH HOH . W 6 HOH D 3 224 33 HOH HOH . W 6 HOH D 4 225 43 HOH HOH . W 6 HOH D 5 226 52 HOH HOH . W 6 HOH D 6 227 53 HOH HOH . W 6 HOH D 7 228 54 HOH HOH . W 6 HOH D 8 229 64 HOH HOH . W 6 HOH D 9 230 67 HOH HOH . W 6 HOH D 10 231 68 HOH HOH . W 6 HOH D 11 232 85 HOH HOH . W 6 HOH D 12 233 87 HOH HOH . W 6 HOH D 13 234 90 HOH HOH . W 6 HOH D 14 235 91 HOH HOH . X 6 HOH E 1 30 30 HOH HOH . X 6 HOH E 2 45 45 HOH HOH . X 6 HOH E 3 46 46 HOH HOH . X 6 HOH E 4 77 77 HOH HOH . X 6 HOH E 5 98 98 HOH HOH . X 6 HOH E 6 110 110 HOH HOH . Y 6 HOH F 1 76 76 HOH HOH . Z 6 HOH G 1 4 4 HOH HOH . Z 6 HOH G 2 57 57 HOH HOH . AA 6 HOH H 1 28 28 HOH HOH . AA 6 HOH H 2 29 29 HOH HOH . AA 6 HOH H 3 47 47 HOH HOH . AA 6 HOH H 4 48 48 HOH HOH . AA 6 HOH H 5 65 65 HOH HOH . AA 6 HOH H 6 78 78 HOH HOH . AA 6 HOH H 7 107 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.721 _atom_site.Cartn_y 19.616 _atom_site.Cartn_z 11.114 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 220 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 799 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #