data_3HPK
#
_model_server_result.job_id            744WX7JODuTpc586MVVBjA 
_model_server_result.datetime_utc      '2025-08-30 13:30:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":126}' 
#
_entry.id    3HPK 
#
_exptl.entry_id    3HPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HPK 
_cell.length_a            49.26 
_cell.length_b            51.79 
_cell.length_c            80.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,C,E 2 1 
A,B,C,D,E 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 44 A CYS 44 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf2 A SG CYS 46 A CYS 46 1_555 B SG CYS 46 B CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3HPK 
_atom_sites.fract_transf_matrix[1][1]    0.0203 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL B 1 126 126 GOL GOL . 
D 3 HOH A 1 126 126 HOH HOH . 
D 3 HOH A 2 127 127 HOH HOH . 
D 3 HOH A 3 128 128 HOH HOH . 
D 3 HOH A 4 129 129 HOH HOH . 
D 3 HOH A 5 130 130 HOH HOH . 
D 3 HOH A 6 131 131 HOH HOH . 
D 3 HOH A 7 132 132 HOH HOH . 
D 3 HOH A 8 133 133 HOH HOH . 
D 3 HOH A 9 134 134 HOH HOH . 
D 3 HOH A 10 135 135 HOH HOH . 
D 3 HOH A 11 136 136 HOH HOH . 
D 3 HOH A 12 137 137 HOH HOH . 
D 3 HOH A 13 138 138 HOH HOH . 
D 3 HOH A 14 139 139 HOH HOH . 
D 3 HOH A 15 140 140 HOH HOH . 
D 3 HOH A 16 141 141 HOH HOH . 
D 3 HOH A 17 142 142 HOH HOH . 
D 3 HOH A 18 143 143 HOH HOH . 
D 3 HOH A 19 144 144 HOH HOH . 
D 3 HOH A 20 145 145 HOH HOH . 
D 3 HOH A 21 146 146 HOH HOH . 
D 3 HOH A 22 147 147 HOH HOH . 
D 3 HOH A 23 148 148 HOH HOH . 
D 3 HOH A 24 149 149 HOH HOH . 
D 3 HOH A 25 150 150 HOH HOH . 
D 3 HOH A 26 151 151 HOH HOH . 
D 3 HOH A 27 152 152 HOH HOH . 
D 3 HOH A 28 153 153 HOH HOH . 
D 3 HOH A 29 154 154 HOH HOH . 
D 3 HOH A 30 155 155 HOH HOH . 
D 3 HOH A 31 156 156 HOH HOH . 
D 3 HOH A 32 157 157 HOH HOH . 
D 3 HOH A 33 158 158 HOH HOH . 
D 3 HOH A 34 159 159 HOH HOH . 
D 3 HOH A 35 160 160 HOH HOH . 
D 3 HOH A 36 161 161 HOH HOH . 
D 3 HOH A 37 162 162 HOH HOH . 
D 3 HOH A 38 163 163 HOH HOH . 
D 3 HOH A 39 164 164 HOH HOH . 
D 3 HOH A 40 165 165 HOH HOH . 
D 3 HOH A 41 166 166 HOH HOH . 
D 3 HOH A 42 167 167 HOH HOH . 
D 3 HOH A 43 168 168 HOH HOH . 
D 3 HOH A 44 169 169 HOH HOH . 
D 3 HOH A 45 170 170 HOH HOH . 
D 3 HOH A 46 171 171 HOH HOH . 
D 3 HOH A 47 172 172 HOH HOH . 
D 3 HOH A 48 173 173 HOH HOH . 
D 3 HOH A 49 174 174 HOH HOH . 
D 3 HOH A 50 175 175 HOH HOH . 
D 3 HOH A 51 176 176 HOH HOH . 
D 3 HOH A 52 177 177 HOH HOH . 
D 3 HOH A 53 178 178 HOH HOH . 
D 3 HOH A 54 179 179 HOH HOH . 
D 3 HOH A 55 180 180 HOH HOH . 
D 3 HOH A 56 181 181 HOH HOH . 
D 3 HOH A 57 182 182 HOH HOH . 
D 3 HOH A 58 183 183 HOH HOH . 
D 3 HOH A 59 184 184 HOH HOH . 
D 3 HOH A 60 185 185 HOH HOH . 
D 3 HOH A 61 186 186 HOH HOH . 
D 3 HOH A 62 187 187 HOH HOH . 
D 3 HOH A 63 188 188 HOH HOH . 
D 3 HOH A 64 189 189 HOH HOH . 
D 3 HOH A 65 190 190 HOH HOH . 
D 3 HOH A 66 191 191 HOH HOH . 
D 3 HOH A 67 192 192 HOH HOH . 
D 3 HOH A 68 193 193 HOH HOH . 
D 3 HOH A 69 194 194 HOH HOH . 
D 3 HOH A 70 195 195 HOH HOH . 
D 3 HOH A 71 196 196 HOH HOH . 
D 3 HOH A 72 197 197 HOH HOH . 
D 3 HOH A 73 198 198 HOH HOH . 
D 3 HOH A 74 199 199 HOH HOH . 
D 3 HOH A 75 200 200 HOH HOH . 
D 3 HOH A 76 201 201 HOH HOH . 
D 3 HOH A 77 202 202 HOH HOH . 
D 3 HOH A 78 203 203 HOH HOH . 
D 3 HOH A 79 204 204 HOH HOH . 
E 3 HOH B 1 127 127 HOH HOH . 
E 3 HOH B 2 128 128 HOH HOH . 
E 3 HOH B 3 129 129 HOH HOH . 
E 3 HOH B 4 130 130 HOH HOH . 
E 3 HOH B 5 131 131 HOH HOH . 
E 3 HOH B 6 132 132 HOH HOH . 
E 3 HOH B 7 133 133 HOH HOH . 
E 3 HOH B 8 134 134 HOH HOH . 
E 3 HOH B 9 135 135 HOH HOH . 
E 3 HOH B 10 136 136 HOH HOH . 
E 3 HOH B 11 137 137 HOH HOH . 
E 3 HOH B 12 138 138 HOH HOH . 
E 3 HOH B 13 139 139 HOH HOH . 
E 3 HOH B 14 140 140 HOH HOH . 
E 3 HOH B 15 141 141 HOH HOH . 
E 3 HOH B 16 142 142 HOH HOH . 
E 3 HOH B 17 143 143 HOH HOH . 
E 3 HOH B 18 144 144 HOH HOH . 
E 3 HOH B 19 145 145 HOH HOH . 
E 3 HOH B 20 146 146 HOH HOH . 
E 3 HOH B 21 147 147 HOH HOH . 
E 3 HOH B 22 148 148 HOH HOH . 
E 3 HOH B 23 149 149 HOH HOH . 
E 3 HOH B 24 150 150 HOH HOH . 
E 3 HOH B 25 151 151 HOH HOH . 
E 3 HOH B 26 152 152 HOH HOH . 
E 3 HOH B 27 153 153 HOH HOH . 
E 3 HOH B 28 154 154 HOH HOH . 
E 3 HOH B 29 155 155 HOH HOH . 
E 3 HOH B 30 156 156 HOH HOH . 
E 3 HOH B 31 157 157 HOH HOH . 
E 3 HOH B 32 158 158 HOH HOH . 
E 3 HOH B 33 159 159 HOH HOH . 
E 3 HOH B 34 160 160 HOH HOH . 
E 3 HOH B 35 161 161 HOH HOH . 
E 3 HOH B 36 162 162 HOH HOH . 
E 3 HOH B 37 163 163 HOH HOH . 
E 3 HOH B 38 164 164 HOH HOH . 
E 3 HOH B 39 165 165 HOH HOH . 
E 3 HOH B 40 166 166 HOH HOH . 
E 3 HOH B 41 167 167 HOH HOH . 
E 3 HOH B 42 168 168 HOH HOH . 
E 3 HOH B 43 169 169 HOH HOH . 
E 3 HOH B 44 170 170 HOH HOH . 
E 3 HOH B 45 171 171 HOH HOH . 
E 3 HOH B 46 172 172 HOH HOH . 
E 3 HOH B 47 173 173 HOH HOH . 
E 3 HOH B 48 174 174 HOH HOH . 
E 3 HOH B 49 175 175 HOH HOH . 
E 3 HOH B 50 176 176 HOH HOH . 
E 3 HOH B 51 177 177 HOH HOH . 
E 3 HOH B 52 178 178 HOH HOH . 
E 3 HOH B 53 179 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -15.875 14.55 -2.771 1 63.88 ? C1 GOL 126 B 1 
HETATM 2 O O1 GOL . . . C 2 -16.869 14.626 -3.769 1 64.23 ? O1 GOL 126 B 1 
HETATM 3 C C2 GOL . . . C 2 -14.77 15.549 -3.094 1 63.63 ? C2 GOL 126 B 1 
HETATM 4 O O2 GOL . . . C 2 -13.514 15.02 -2.723 1 63.18 ? O2 GOL 126 B 1 
HETATM 5 C C3 GOL . . . C 2 -15.032 16.848 -2.339 1 63.21 ? C3 GOL 126 B 1 
HETATM 6 O O3 GOL . . . C 2 -14.029 17.778 -2.672 1 62.77 ? O3 GOL 126 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           417 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#