data_3HQ8 # _model_server_result.job_id TwEvqBkjhEsvxg-mWshsqw _model_server_result.datetime_utc '2024-11-27 11:12:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 3HQ8 # _exptl.entry_id 3HQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.57 _cell.angle_gamma 90 _cell.entry_id 3HQ8 _cell.length_a 56.16 _cell.length_b 89.508 _cell.length_c 75.111 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 77 A HIS 77 1_555 C FE HEM . A HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc2 A OD1 ASN 101 A ASN 101 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A NE2 HIS 223 A HIS 223 1_555 D FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A O THR 278 A THR 278 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A O PRO 280 A PRO 280 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 A SD MET 297 A MET 297 1_555 D FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc7 F N1 IMD . A IMD 346 1_555 C FE HEM . A HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc8 K O HOH . A HOH 355 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 K O HOH . A HOH 381 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc10 B NE2 HIS 77 B HIS 77 1_555 G FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc11 B OD1 ASN 101 B ASN 101 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc12 B NE2 HIS 223 B HIS 223 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc13 B O THR 278 B THR 278 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc14 B O PRO 280 B PRO 280 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc15 B SD MET 297 B MET 297 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc16 J N3 IMD . B IMD 346 1_555 G FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc17 L O HOH . B HOH 394 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HQ8 _atom_sites.fract_transf_matrix[1][1] 0.017806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00564 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 400 400 HEM HEM . D 2 HEM A 1 401 401 HEM HEM . E 3 CA A 1 402 402 CA CA . F 4 IMD A 1 346 2 IMD IMD . G 2 HEM B 1 400 400 HEM HEM . H 2 HEM B 1 401 401 HEM HEM . I 3 CA B 1 402 402 CA CA . J 4 IMD B 1 346 1 IMD IMD . K 5 HOH A 1 347 1 HOH HOH . K 5 HOH A 2 348 2 HOH HOH . K 5 HOH A 3 349 3 HOH HOH . K 5 HOH A 4 350 4 HOH HOH . K 5 HOH A 5 351 6 HOH HOH . K 5 HOH A 6 352 7 HOH HOH . K 5 HOH A 7 353 8 HOH HOH . K 5 HOH A 8 354 9 HOH HOH . K 5 HOH A 9 355 10 HOH HOH . K 5 HOH A 10 356 11 HOH HOH . K 5 HOH A 11 357 13 HOH HOH . K 5 HOH A 12 358 14 HOH HOH . K 5 HOH A 13 359 15 HOH HOH . K 5 HOH A 14 360 16 HOH HOH . K 5 HOH A 15 361 17 HOH HOH . K 5 HOH A 16 362 18 HOH HOH . K 5 HOH A 17 363 19 HOH HOH . K 5 HOH A 18 364 20 HOH HOH . K 5 HOH A 19 365 21 HOH HOH . K 5 HOH A 20 366 22 HOH HOH . K 5 HOH A 21 367 23 HOH HOH . K 5 HOH A 22 368 24 HOH HOH . K 5 HOH A 23 369 25 HOH HOH . K 5 HOH A 24 370 26 HOH HOH . K 5 HOH A 25 371 27 HOH HOH . K 5 HOH A 26 372 28 HOH HOH . K 5 HOH A 27 373 29 HOH HOH . K 5 HOH A 28 374 30 HOH HOH . K 5 HOH A 29 375 32 HOH HOH . K 5 HOH A 30 376 33 HOH HOH . K 5 HOH A 31 377 34 HOH HOH . K 5 HOH A 32 378 56 HOH HOH . K 5 HOH A 33 379 57 HOH HOH . K 5 HOH A 34 380 58 HOH HOH . K 5 HOH A 35 381 59 HOH HOH . K 5 HOH A 36 382 60 HOH HOH . K 5 HOH A 37 383 61 HOH HOH . K 5 HOH A 38 384 70 HOH HOH . K 5 HOH A 39 385 71 HOH HOH . K 5 HOH A 40 386 72 HOH HOH . K 5 HOH A 41 387 73 HOH HOH . K 5 HOH A 42 388 74 HOH HOH . K 5 HOH A 43 389 75 HOH HOH . K 5 HOH A 44 390 76 HOH HOH . K 5 HOH A 45 391 77 HOH HOH . K 5 HOH A 46 392 78 HOH HOH . K 5 HOH A 47 393 79 HOH HOH . K 5 HOH A 48 394 91 HOH HOH . K 5 HOH A 49 395 92 HOH HOH . K 5 HOH A 50 396 93 HOH HOH . K 5 HOH A 51 397 94 HOH HOH . K 5 HOH A 52 398 95 HOH HOH . K 5 HOH A 53 399 96 HOH HOH . K 5 HOH A 54 403 97 HOH HOH . K 5 HOH A 55 404 98 HOH HOH . K 5 HOH A 56 405 99 HOH HOH . K 5 HOH A 57 406 100 HOH HOH . K 5 HOH A 58 407 101 HOH HOH . K 5 HOH A 59 408 102 HOH HOH . K 5 HOH A 60 409 103 HOH HOH . K 5 HOH A 61 410 104 HOH HOH . K 5 HOH A 62 411 123 HOH HOH . K 5 HOH A 63 412 124 HOH HOH . K 5 HOH A 64 413 125 HOH HOH . K 5 HOH A 65 414 126 HOH HOH . K 5 HOH A 66 415 127 HOH HOH . K 5 HOH A 67 416 128 HOH HOH . K 5 HOH A 68 417 138 HOH HOH . K 5 HOH A 69 418 139 HOH HOH . K 5 HOH A 70 419 140 HOH HOH . L 5 HOH B 1 347 5 HOH HOH . L 5 HOH B 2 348 12 HOH HOH . L 5 HOH B 3 349 31 HOH HOH . L 5 HOH B 4 350 35 HOH HOH . L 5 HOH B 5 351 36 HOH HOH . L 5 HOH B 6 352 37 HOH HOH . L 5 HOH B 7 353 38 HOH HOH . L 5 HOH B 8 354 39 HOH HOH . L 5 HOH B 9 355 40 HOH HOH . L 5 HOH B 10 356 41 HOH HOH . L 5 HOH B 11 357 42 HOH HOH . L 5 HOH B 12 358 43 HOH HOH . L 5 HOH B 13 359 44 HOH HOH . L 5 HOH B 14 360 45 HOH HOH . L 5 HOH B 15 361 46 HOH HOH . L 5 HOH B 16 362 47 HOH HOH . L 5 HOH B 17 363 48 HOH HOH . L 5 HOH B 18 364 49 HOH HOH . L 5 HOH B 19 365 50 HOH HOH . L 5 HOH B 20 366 51 HOH HOH . L 5 HOH B 21 367 52 HOH HOH . L 5 HOH B 22 368 53 HOH HOH . L 5 HOH B 23 369 54 HOH HOH . L 5 HOH B 24 370 55 HOH HOH . L 5 HOH B 25 371 62 HOH HOH . L 5 HOH B 26 372 63 HOH HOH . L 5 HOH B 27 373 64 HOH HOH . L 5 HOH B 28 374 65 HOH HOH . L 5 HOH B 29 375 66 HOH HOH . L 5 HOH B 30 376 67 HOH HOH . L 5 HOH B 31 377 68 HOH HOH . L 5 HOH B 32 378 69 HOH HOH . L 5 HOH B 33 379 80 HOH HOH . L 5 HOH B 34 380 81 HOH HOH . L 5 HOH B 35 381 82 HOH HOH . L 5 HOH B 36 382 83 HOH HOH . L 5 HOH B 37 383 84 HOH HOH . L 5 HOH B 38 384 85 HOH HOH . L 5 HOH B 39 385 86 HOH HOH . L 5 HOH B 40 386 87 HOH HOH . L 5 HOH B 41 387 88 HOH HOH . L 5 HOH B 42 388 89 HOH HOH . L 5 HOH B 43 389 90 HOH HOH . L 5 HOH B 44 390 105 HOH HOH . L 5 HOH B 45 391 106 HOH HOH . L 5 HOH B 46 392 107 HOH HOH . L 5 HOH B 47 393 108 HOH HOH . L 5 HOH B 48 394 109 HOH HOH . L 5 HOH B 49 395 110 HOH HOH . L 5 HOH B 50 396 111 HOH HOH . L 5 HOH B 51 397 112 HOH HOH . L 5 HOH B 52 398 113 HOH HOH . L 5 HOH B 53 399 114 HOH HOH . L 5 HOH B 54 403 115 HOH HOH . L 5 HOH B 55 404 116 HOH HOH . L 5 HOH B 56 405 117 HOH HOH . L 5 HOH B 57 406 118 HOH HOH . L 5 HOH B 58 407 119 HOH HOH . L 5 HOH B 59 408 120 HOH HOH . L 5 HOH B 60 409 121 HOH HOH . L 5 HOH B 61 410 122 HOH HOH . L 5 HOH B 62 411 129 HOH HOH . L 5 HOH B 63 412 130 HOH HOH . L 5 HOH B 64 413 131 HOH HOH . L 5 HOH B 65 414 132 HOH HOH . L 5 HOH B 66 415 133 HOH HOH . L 5 HOH B 67 416 134 HOH HOH . L 5 HOH B 68 417 135 HOH HOH . L 5 HOH B 69 418 136 HOH HOH . L 5 HOH B 70 419 137 HOH HOH . L 5 HOH B 71 420 141 HOH HOH . L 5 HOH B 72 421 142 HOH HOH . L 5 HOH B 73 422 143 HOH HOH . L 5 HOH B 74 423 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.286 _atom_site.Cartn_y -3.375 _atom_site.Cartn_z 0.046 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #