data_3HQD # _model_server_result.job_id p2hLvTzdChb8GQEqKm27kQ _model_server_result.datetime_utc '2024-11-25 17:46:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":562}' # _entry.id 3HQD # _exptl.entry_id 3HQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.86 _cell.angle_gamma 90 _cell.entry_id 3HQD _cell.length_a 60.5 _cell.length_b 71.435 _cell.length_c 94.846 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 310 n n P O2 PO4 sing 311 n n P O3 PO4 sing 312 n n P O4 PO4 sing 313 n n # _atom_sites.entry_id 3HQD _atom_sites.fract_transf_matrix[1][1] 0.016529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002577 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 601 601 ANP ANP . D 3 PO4 A 1 562 562 PO4 PO4 . E 4 MG A 1 501 501 MG MG . F 2 ANP B 1 602 602 ANP ANP . G 4 MG B 1 502 502 MG MG . H 5 HOH A 1 370 1 HOH HOH . H 5 HOH A 2 371 2 HOH HOH . H 5 HOH A 3 372 3 HOH HOH . H 5 HOH A 4 373 7 HOH HOH . H 5 HOH A 5 374 9 HOH HOH . H 5 HOH A 6 375 10 HOH HOH . H 5 HOH A 7 376 12 HOH HOH . H 5 HOH A 8 377 13 HOH HOH . H 5 HOH A 9 378 14 HOH HOH . H 5 HOH A 10 379 23 HOH HOH . H 5 HOH A 11 380 24 HOH HOH . H 5 HOH A 12 381 26 HOH HOH . H 5 HOH A 13 382 28 HOH HOH . H 5 HOH A 14 383 29 HOH HOH . H 5 HOH A 15 384 30 HOH HOH . H 5 HOH A 16 385 31 HOH HOH . H 5 HOH A 17 386 32 HOH HOH . H 5 HOH A 18 387 33 HOH HOH . H 5 HOH A 19 388 34 HOH HOH . H 5 HOH A 20 389 35 HOH HOH . H 5 HOH A 21 390 36 HOH HOH . H 5 HOH A 22 391 37 HOH HOH . H 5 HOH A 23 392 38 HOH HOH . H 5 HOH A 24 393 39 HOH HOH . H 5 HOH A 25 394 40 HOH HOH . H 5 HOH A 26 395 41 HOH HOH . H 5 HOH A 27 396 42 HOH HOH . H 5 HOH A 28 397 43 HOH HOH . H 5 HOH A 29 398 48 HOH HOH . H 5 HOH A 30 399 49 HOH HOH . H 5 HOH A 31 400 50 HOH HOH . H 5 HOH A 32 401 51 HOH HOH . H 5 HOH A 33 402 54 HOH HOH . H 5 HOH A 34 403 55 HOH HOH . H 5 HOH A 35 404 57 HOH HOH . H 5 HOH A 36 405 59 HOH HOH . H 5 HOH A 37 406 60 HOH HOH . H 5 HOH A 38 407 61 HOH HOH . H 5 HOH A 39 408 68 HOH HOH . H 5 HOH A 40 409 69 HOH HOH . H 5 HOH A 41 410 70 HOH HOH . H 5 HOH A 42 411 71 HOH HOH . H 5 HOH A 43 412 72 HOH HOH . H 5 HOH A 44 413 73 HOH HOH . H 5 HOH A 45 414 74 HOH HOH . H 5 HOH A 46 415 75 HOH HOH . H 5 HOH A 47 416 76 HOH HOH . H 5 HOH A 48 417 77 HOH HOH . H 5 HOH A 49 418 78 HOH HOH . H 5 HOH A 50 419 80 HOH HOH . H 5 HOH A 51 420 81 HOH HOH . H 5 HOH A 52 421 90 HOH HOH . H 5 HOH A 53 422 91 HOH HOH . H 5 HOH A 54 423 92 HOH HOH . H 5 HOH A 55 424 93 HOH HOH . H 5 HOH A 56 425 94 HOH HOH . H 5 HOH A 57 426 95 HOH HOH . H 5 HOH A 58 427 96 HOH HOH . H 5 HOH A 59 428 97 HOH HOH . H 5 HOH A 60 429 98 HOH HOH . H 5 HOH A 61 430 100 HOH HOH . H 5 HOH A 62 431 101 HOH HOH . H 5 HOH A 63 432 102 HOH HOH . H 5 HOH A 64 433 103 HOH HOH . H 5 HOH A 65 434 104 HOH HOH . H 5 HOH A 66 435 105 HOH HOH . H 5 HOH A 67 436 106 HOH HOH . H 5 HOH A 68 437 107 HOH HOH . H 5 HOH A 69 438 129 HOH HOH . H 5 HOH A 70 439 130 HOH HOH . H 5 HOH A 71 440 131 HOH HOH . H 5 HOH A 72 441 133 HOH HOH . H 5 HOH A 73 442 134 HOH HOH . H 5 HOH A 74 443 135 HOH HOH . H 5 HOH A 75 444 136 HOH HOH . H 5 HOH A 76 445 137 HOH HOH . H 5 HOH A 77 446 138 HOH HOH . H 5 HOH A 78 447 139 HOH HOH . H 5 HOH A 79 448 140 HOH HOH . H 5 HOH A 80 449 141 HOH HOH . H 5 HOH A 81 450 142 HOH HOH . H 5 HOH A 82 451 143 HOH HOH . H 5 HOH A 83 452 144 HOH HOH . H 5 HOH A 84 453 145 HOH HOH . H 5 HOH A 85 454 146 HOH HOH . H 5 HOH A 86 455 147 HOH HOH . H 5 HOH A 87 456 148 HOH HOH . H 5 HOH A 88 457 149 HOH HOH . H 5 HOH A 89 458 150 HOH HOH . H 5 HOH A 90 459 151 HOH HOH . H 5 HOH A 91 460 152 HOH HOH . H 5 HOH A 92 461 153 HOH HOH . H 5 HOH A 93 462 154 HOH HOH . H 5 HOH A 94 463 155 HOH HOH . H 5 HOH A 95 464 156 HOH HOH . H 5 HOH A 96 465 157 HOH HOH . H 5 HOH A 97 466 158 HOH HOH . H 5 HOH A 98 467 159 HOH HOH . H 5 HOH A 99 468 160 HOH HOH . H 5 HOH A 100 469 161 HOH HOH . H 5 HOH A 101 470 162 HOH HOH . H 5 HOH A 102 471 163 HOH HOH . H 5 HOH A 103 472 164 HOH HOH . H 5 HOH A 104 473 165 HOH HOH . H 5 HOH A 105 474 166 HOH HOH . H 5 HOH A 106 475 167 HOH HOH . H 5 HOH A 107 476 168 HOH HOH . H 5 HOH A 108 477 169 HOH HOH . H 5 HOH A 109 478 170 HOH HOH . H 5 HOH A 110 479 171 HOH HOH . H 5 HOH A 111 480 172 HOH HOH . H 5 HOH A 112 481 173 HOH HOH . H 5 HOH A 113 482 174 HOH HOH . H 5 HOH A 114 483 175 HOH HOH . H 5 HOH A 115 484 176 HOH HOH . H 5 HOH A 116 485 177 HOH HOH . H 5 HOH A 117 486 178 HOH HOH . H 5 HOH A 118 487 179 HOH HOH . H 5 HOH A 119 488 180 HOH HOH . H 5 HOH A 120 489 181 HOH HOH . H 5 HOH A 121 490 182 HOH HOH . H 5 HOH A 122 491 183 HOH HOH . H 5 HOH A 123 492 184 HOH HOH . H 5 HOH A 124 493 192 HOH HOH . H 5 HOH A 125 494 193 HOH HOH . H 5 HOH A 126 495 194 HOH HOH . H 5 HOH A 127 496 196 HOH HOH . H 5 HOH A 128 497 197 HOH HOH . H 5 HOH A 129 498 199 HOH HOH . H 5 HOH A 130 499 200 HOH HOH . H 5 HOH A 131 500 201 HOH HOH . H 5 HOH A 132 502 202 HOH HOH . H 5 HOH A 133 503 203 HOH HOH . H 5 HOH A 134 504 204 HOH HOH . H 5 HOH A 135 505 205 HOH HOH . H 5 HOH A 136 506 206 HOH HOH . H 5 HOH A 137 507 214 HOH HOH . H 5 HOH A 138 508 221 HOH HOH . H 5 HOH A 139 509 222 HOH HOH . H 5 HOH A 140 510 223 HOH HOH . H 5 HOH A 141 511 224 HOH HOH . H 5 HOH A 142 512 225 HOH HOH . H 5 HOH A 143 513 226 HOH HOH . H 5 HOH A 144 514 227 HOH HOH . H 5 HOH A 145 515 228 HOH HOH . H 5 HOH A 146 516 229 HOH HOH . H 5 HOH A 147 517 230 HOH HOH . H 5 HOH A 148 518 231 HOH HOH . H 5 HOH A 149 519 232 HOH HOH . H 5 HOH A 150 520 233 HOH HOH . H 5 HOH A 151 521 234 HOH HOH . H 5 HOH A 152 522 235 HOH HOH . H 5 HOH A 153 523 236 HOH HOH . H 5 HOH A 154 524 237 HOH HOH . H 5 HOH A 155 525 238 HOH HOH . H 5 HOH A 156 526 248 HOH HOH . H 5 HOH A 157 527 249 HOH HOH . H 5 HOH A 158 528 250 HOH HOH . H 5 HOH A 159 529 251 HOH HOH . H 5 HOH A 160 530 252 HOH HOH . H 5 HOH A 161 531 256 HOH HOH . H 5 HOH A 162 532 257 HOH HOH . H 5 HOH A 163 533 258 HOH HOH . H 5 HOH A 164 534 259 HOH HOH . H 5 HOH A 165 535 260 HOH HOH . H 5 HOH A 166 536 261 HOH HOH . H 5 HOH A 167 537 262 HOH HOH . H 5 HOH A 168 538 263 HOH HOH . H 5 HOH A 169 539 264 HOH HOH . H 5 HOH A 170 540 265 HOH HOH . H 5 HOH A 171 541 266 HOH HOH . H 5 HOH A 172 542 267 HOH HOH . H 5 HOH A 173 543 268 HOH HOH . H 5 HOH A 174 544 269 HOH HOH . H 5 HOH A 175 545 271 HOH HOH . H 5 HOH A 176 546 273 HOH HOH . H 5 HOH A 177 547 274 HOH HOH . H 5 HOH A 178 548 278 HOH HOH . H 5 HOH A 179 549 279 HOH HOH . H 5 HOH A 180 550 280 HOH HOH . H 5 HOH A 181 551 281 HOH HOH . I 5 HOH B 1 370 4 HOH HOH . I 5 HOH B 2 371 5 HOH HOH . I 5 HOH B 3 372 6 HOH HOH . I 5 HOH B 4 373 8 HOH HOH . I 5 HOH B 5 374 11 HOH HOH . I 5 HOH B 6 375 15 HOH HOH . I 5 HOH B 7 376 16 HOH HOH . I 5 HOH B 8 377 17 HOH HOH . I 5 HOH B 9 378 18 HOH HOH . I 5 HOH B 10 379 19 HOH HOH . I 5 HOH B 11 380 20 HOH HOH . I 5 HOH B 12 381 21 HOH HOH . I 5 HOH B 13 382 22 HOH HOH . I 5 HOH B 14 383 25 HOH HOH . I 5 HOH B 15 384 27 HOH HOH . I 5 HOH B 16 385 44 HOH HOH . I 5 HOH B 17 386 45 HOH HOH . I 5 HOH B 18 387 46 HOH HOH . I 5 HOH B 19 388 47 HOH HOH . I 5 HOH B 20 389 52 HOH HOH . I 5 HOH B 21 390 53 HOH HOH . I 5 HOH B 22 391 56 HOH HOH . I 5 HOH B 23 392 58 HOH HOH . I 5 HOH B 24 393 62 HOH HOH . I 5 HOH B 25 394 63 HOH HOH . I 5 HOH B 26 395 64 HOH HOH . I 5 HOH B 27 396 65 HOH HOH . I 5 HOH B 28 397 66 HOH HOH . I 5 HOH B 29 398 67 HOH HOH . I 5 HOH B 30 399 79 HOH HOH . I 5 HOH B 31 400 82 HOH HOH . I 5 HOH B 32 401 83 HOH HOH . I 5 HOH B 33 402 84 HOH HOH . I 5 HOH B 34 403 85 HOH HOH . I 5 HOH B 35 404 86 HOH HOH . I 5 HOH B 36 405 87 HOH HOH . I 5 HOH B 37 406 88 HOH HOH . I 5 HOH B 38 407 89 HOH HOH . I 5 HOH B 39 408 99 HOH HOH . I 5 HOH B 40 409 108 HOH HOH . I 5 HOH B 41 410 109 HOH HOH . I 5 HOH B 42 411 110 HOH HOH . I 5 HOH B 43 412 111 HOH HOH . I 5 HOH B 44 413 112 HOH HOH . I 5 HOH B 45 414 113 HOH HOH . I 5 HOH B 46 415 114 HOH HOH . I 5 HOH B 47 416 115 HOH HOH . I 5 HOH B 48 417 116 HOH HOH . I 5 HOH B 49 418 117 HOH HOH . I 5 HOH B 50 419 118 HOH HOH . I 5 HOH B 51 420 119 HOH HOH . I 5 HOH B 52 421 120 HOH HOH . I 5 HOH B 53 422 121 HOH HOH . I 5 HOH B 54 423 122 HOH HOH . I 5 HOH B 55 424 123 HOH HOH . I 5 HOH B 56 425 124 HOH HOH . I 5 HOH B 57 426 125 HOH HOH . I 5 HOH B 58 427 126 HOH HOH . I 5 HOH B 59 428 127 HOH HOH . I 5 HOH B 60 429 128 HOH HOH . I 5 HOH B 61 430 132 HOH HOH . I 5 HOH B 62 431 185 HOH HOH . I 5 HOH B 63 432 186 HOH HOH . I 5 HOH B 64 433 187 HOH HOH . I 5 HOH B 65 434 188 HOH HOH . I 5 HOH B 66 435 189 HOH HOH . I 5 HOH B 67 436 190 HOH HOH . I 5 HOH B 68 437 191 HOH HOH . I 5 HOH B 69 438 195 HOH HOH . I 5 HOH B 70 439 198 HOH HOH . I 5 HOH B 71 440 207 HOH HOH . I 5 HOH B 72 441 208 HOH HOH . I 5 HOH B 73 442 209 HOH HOH . I 5 HOH B 74 443 210 HOH HOH . I 5 HOH B 75 444 211 HOH HOH . I 5 HOH B 76 445 212 HOH HOH . I 5 HOH B 77 446 213 HOH HOH . I 5 HOH B 78 447 215 HOH HOH . I 5 HOH B 79 448 216 HOH HOH . I 5 HOH B 80 449 217 HOH HOH . I 5 HOH B 81 450 218 HOH HOH . I 5 HOH B 82 451 219 HOH HOH . I 5 HOH B 83 452 220 HOH HOH . I 5 HOH B 84 453 239 HOH HOH . I 5 HOH B 85 454 240 HOH HOH . I 5 HOH B 86 455 241 HOH HOH . I 5 HOH B 87 456 242 HOH HOH . I 5 HOH B 88 457 243 HOH HOH . I 5 HOH B 89 458 244 HOH HOH . I 5 HOH B 90 459 245 HOH HOH . I 5 HOH B 91 460 246 HOH HOH . I 5 HOH B 92 461 247 HOH HOH . I 5 HOH B 93 462 253 HOH HOH . I 5 HOH B 94 463 254 HOH HOH . I 5 HOH B 95 464 255 HOH HOH . I 5 HOH B 96 465 270 HOH HOH . I 5 HOH B 97 466 272 HOH HOH . I 5 HOH B 98 467 275 HOH HOH . I 5 HOH B 99 468 276 HOH HOH . I 5 HOH B 100 469 277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 26.27 -14.59 54.04 1 38.89 ? P PO4 562 A 1 HETATM 2 O O1 PO4 . . . D 3 25.976 -15.936 53.27 1 42.94 ? O1 PO4 562 A 1 HETATM 3 O O2 PO4 . . . D 3 26.405 -13.41 53.002 1 39.82 ? O2 PO4 562 A 1 HETATM 4 O O3 PO4 . . . D 3 25.085 -14.283 55.034 1 41.74 ? O3 PO4 562 A 1 HETATM 5 O O4 PO4 . . . D 3 27.615 -14.732 54.853 1 43.34 ? O4 PO4 562 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #