data_3HQG
#
_model_server_result.job_id            R0ULgOK4pq2NJhBJ0K9q3A 
_model_server_result.datetime_utc      '2024-11-26 03:20:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hqg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3HQG 
#
_exptl.entry_id    3HQG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HQG 
_cell.length_a            77.054 
_cell.length_b            57.971 
_cell.length_c            61.01 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HQG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 77.054 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog 'DT-DG MISPAIR' hydrog1 C O2 DT 1 C DT -5 1_555 C N2 DG 11 C DG 5 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog 'DA-DC MISPAIR' hydrog2 C N1 DA 2 C DA -4 1_555 C N4 DC 10 C DC 4 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DT MISPAIR' hydrog3 C N1 DG 3 C DG -3 1_555 C O4 DT 9 C DT 3 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 C N3 DC 4 C DC -2 1_555 C N1 DG 8 C DG 2 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 C N4 DC 4 C DC -2 1_555 C O6 DG 8 C DG 2 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 C O2 DC 4 C DC -2 1_555 C N2 DG 8 C DG 2 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 C N3 DC 5 C DC -1 1_555 C N1 DG 7 C DG 1 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 C N4 DC 5 C DC -1 1_555 C O6 DG 7 C DG 1 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 C O2 DC 5 C DC -1 1_555 C N2 DG 7 C DG 1 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 C N1 DG 7 C DG 1 1_555 C N3 DC 5 C DC -1 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 C N2 DG 7 C DG 1 1_555 C O2 DC 5 C DC -1 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 C O6 DG 7 C DG 1 1_555 C N4 DC 5 C DC -1 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 C N1 DG 8 C DG 2 1_555 C N3 DC 4 C DC -2 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 C N2 DG 8 C DG 2 1_555 C O2 DC 4 C DC -2 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 C O6 DG 8 C DG 2 1_555 C N4 DC 4 C DC -2 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog 'DT-DG MISPAIR' hydrog16 C O2 DT 9 C DT 3 1_555 C N2 DG 3 C DG -3 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DA MISPAIR' hydrog17 C N4 DC 10 C DC 4 1_555 C N1 DA 2 C DA -4 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DT MISPAIR' hydrog18 C N2 DG 11 C DG 5 1_555 C O2 DT 1 C DT -5 2_655 ? B ? ? B ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 278 n n 
C1 C2 GOL sing 279 n n 
C1 H11 GOL sing 280 n n 
C1 H12 GOL sing 281 n n 
O1 HO1 GOL sing 282 n n 
C2 O2 GOL sing 283 n n 
C2 C3 GOL sing 284 n n 
C2 H2 GOL sing 285 n n 
O2 HO2 GOL sing 286 n n 
C3 O3 GOL sing 287 n n 
C3 H31 GOL sing 288 n n 
C3 H32 GOL sing 289 n n 
O3 HO3 GOL sing 290 n n 
#
_atom_sites.entry_id                     3HQG 
_atom_sites.fract_transf_matrix[1][1]    0.012978 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 1 1 GOL GOL . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 3 3 HOH HOH . 
E 5 HOH A 3 4 4 HOH HOH . 
E 5 HOH A 4 5 5 HOH HOH . 
E 5 HOH A 5 6 6 HOH HOH . 
E 5 HOH A 6 7 7 HOH HOH . 
E 5 HOH A 7 8 8 HOH HOH . 
E 5 HOH A 8 10 10 HOH HOH . 
E 5 HOH A 9 11 11 HOH HOH . 
E 5 HOH A 10 12 12 HOH HOH . 
E 5 HOH A 11 13 13 HOH HOH . 
E 5 HOH A 12 15 15 HOH HOH . 
E 5 HOH A 13 16 16 HOH HOH . 
E 5 HOH A 14 17 17 HOH HOH . 
E 5 HOH A 15 18 18 HOH HOH . 
E 5 HOH A 16 19 19 HOH HOH . 
E 5 HOH A 17 20 20 HOH HOH . 
E 5 HOH A 18 23 23 HOH HOH . 
E 5 HOH A 19 24 24 HOH HOH . 
E 5 HOH A 20 25 25 HOH HOH . 
E 5 HOH A 21 27 27 HOH HOH . 
E 5 HOH A 22 28 28 HOH HOH . 
E 5 HOH A 23 29 29 HOH HOH . 
E 5 HOH A 24 30 30 HOH HOH . 
E 5 HOH A 25 31 31 HOH HOH . 
E 5 HOH A 26 32 32 HOH HOH . 
E 5 HOH A 27 33 33 HOH HOH . 
E 5 HOH A 28 34 34 HOH HOH . 
E 5 HOH A 29 35 35 HOH HOH . 
E 5 HOH A 30 36 36 HOH HOH . 
E 5 HOH A 31 37 37 HOH HOH . 
E 5 HOH A 32 38 38 HOH HOH . 
E 5 HOH A 33 41 41 HOH HOH . 
E 5 HOH A 34 42 42 HOH HOH . 
E 5 HOH A 35 43 43 HOH HOH . 
E 5 HOH A 36 44 44 HOH HOH . 
E 5 HOH A 37 46 46 HOH HOH . 
E 5 HOH A 38 47 47 HOH HOH . 
E 5 HOH A 39 48 48 HOH HOH . 
E 5 HOH A 40 49 49 HOH HOH . 
E 5 HOH A 41 50 50 HOH HOH . 
E 5 HOH A 42 51 51 HOH HOH . 
E 5 HOH A 43 53 53 HOH HOH . 
E 5 HOH A 44 54 54 HOH HOH . 
E 5 HOH A 45 55 55 HOH HOH . 
E 5 HOH A 46 56 56 HOH HOH . 
E 5 HOH A 47 57 57 HOH HOH . 
E 5 HOH A 48 58 58 HOH HOH . 
E 5 HOH A 49 60 60 HOH HOH . 
E 5 HOH A 50 61 61 HOH HOH . 
E 5 HOH A 51 64 64 HOH HOH . 
E 5 HOH A 52 65 65 HOH HOH . 
E 5 HOH A 53 66 66 HOH HOH . 
E 5 HOH A 54 67 67 HOH HOH . 
E 5 HOH A 55 68 68 HOH HOH . 
E 5 HOH A 56 69 69 HOH HOH . 
E 5 HOH A 57 405 405 HOH HOH . 
F 5 HOH B 1 9 9 HOH HOH . 
F 5 HOH B 2 22 22 HOH HOH . 
F 5 HOH B 3 26 26 HOH HOH . 
F 5 HOH B 4 45 45 HOH HOH . 
F 5 HOH B 5 52 52 HOH HOH . 
G 5 HOH C 1 39 39 HOH HOH . 
G 5 HOH C 2 40 40 HOH HOH . 
G 5 HOH C 3 59 59 HOH HOH . 
G 5 HOH C 4 62 62 HOH HOH . 
G 5 HOH C 5 63 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 39.933 -12.954 -19.153 1 89.59 ? C1 GOL 1 A 1 
HETATM 2 O O1 GOL . . . D 4 40.109 -12.099 -18.045 1 89.09 ? O1 GOL 1 A 1 
HETATM 3 C C2 GOL . . . D 4 39.155 -12.249 -20.264 1 89.98 ? C2 GOL 1 A 1 
HETATM 4 O O2 GOL . . . D 4 38.152 -11.413 -19.725 1 90.36 ? O2 GOL 1 A 1 
HETATM 5 C C3 GOL . . . D 4 40.097 -11.435 -21.145 1 89.8 ? C3 GOL 1 A 1 
HETATM 6 O O3 GOL . . . D 4 39.363 -10.842 -22.195 1 89.47 ? O3 GOL 1 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#