data_3HQO # _model_server_result.job_id HrVEqNKdk3oIGobfEswPHw _model_server_result.datetime_utc '2024-11-24 04:39:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1001}' # _entry.id 3HQO # _exptl.entry_id 3HQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.03 _cell.angle_gamma 90 _cell.entry_id 3HQO _cell.length_a 107.516 _cell.length_b 128.133 _cell.length_c 204.361 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I 1 1,2 B,J,K,L,M,N 2 1,3 C,O,P,Q,R 3 1,2 D,S,T,U,V 4 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0.107003 0 -204.360972 4 'crystal symmetry operation' 2_654 -x+1,y,-z-1 -1 0 0 0 1 0 0 0 -1 107.623003 0 -204.360972 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 N N N ? 5 R N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 K ASN 51 1_555 G K K . K K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.207 ? metalc ? metalc2 A OG SER 54 K SER 53 1_555 G K K . K K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc3 A OD1 ASP 84 K ASP 83 1_555 G K K . K K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc4 A O THR 85 K THR 84 1_555 G K K . K K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc5 A OG SER 212 K SER 211 1_555 G K K . K K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.33 ? metalc ? metalc6 A OE1 GLU 241 K GLU 240 1_555 F MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 A OD2 ASP 265 K ASP 264 1_555 F MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc8 E MG MG . K MG 500 1_555 I O1B ATP . K ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc9 E MG MG . K MG 500 1_555 I O1G ATP . K ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc10 E MG MG . K MG 500 1_555 I O1A ATP . K ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc11 F MG MG . K MG 502 1_555 H O4 OXL . K OXL 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc12 F MG MG . K MG 502 1_555 I O2G ATP . K ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc13 G K K . K K 504 1_555 I O3G ATP . K ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc14 B OD1 ASN 52 A ASN 51 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.27 ? metalc ? metalc15 B OG SER 54 A SER 53 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc16 B OD1 ASP 84 A ASP 83 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc17 B O THR 85 A THR 84 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc18 B OG SER 212 A SER 211 1_555 L K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.261 ? metalc ? metalc19 B OE1 GLU 241 A GLU 240 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc20 B OD2 ASP 265 A ASP 264 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc21 J MG MG . A MG 500 1_555 N O1G ATP . A ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc22 J MG MG . A MG 500 1_555 N O1B ATP . A ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc23 J MG MG . A MG 500 1_555 N O1A ATP . A ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc24 K MG MG . A MG 502 1_555 M O4 OXL . A OXL 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc25 K MG MG . A MG 502 1_555 N O2G ATP . A ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc26 L K K . A K 504 1_555 N O3G ATP . A ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc27 C OG SER 54 B SER 53 1_555 P K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc28 C OD1 ASP 84 B ASP 83 1_555 P K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc29 C O THR 85 B THR 84 1_555 P K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? metalc ? metalc30 C OG SER 212 B SER 211 1_555 P K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? metalc ? metalc31 C OE1 GLU 241 B GLU 240 1_555 O MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc32 C OD2 ASP 265 B ASP 264 1_555 O MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc33 O MG MG . B MG 502 1_555 Q O4 OXL . B OXL 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc34 D OD1 ASN 52 C ASN 51 1_555 T K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc35 D OG SER 54 C SER 53 1_555 T K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc36 D OD1 ASP 84 C ASP 83 1_555 T K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc37 D O THR 85 C THR 84 1_555 T K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc38 D OG SER 212 C SER 211 1_555 T K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? metalc ? metalc39 D OE1 GLU 241 C GLU 240 1_555 S MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc40 D OD2 ASP 265 C ASP 264 1_555 S MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc41 S MG MG . C MG 502 1_555 U O4 OXL . C OXL 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3HQO _atom_sites.fract_transf_matrix[1][1] 0.009301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG K 1 500 500 MG MG . F 2 MG K 1 502 502 MG MG . G 3 K K 1 504 504 K K . H 4 OXL K 1 510 510 OXL OXL . I 5 ATP K 1 1001 1001 ATP ATP . J 2 MG A 1 500 500 MG MG . K 2 MG A 1 502 502 MG MG . L 3 K A 1 504 504 K K . M 4 OXL A 1 510 510 OXL OXL . N 5 ATP A 1 1001 1001 ATP ATP . O 2 MG B 1 502 502 MG MG . P 3 K B 1 504 504 K K . Q 4 OXL B 1 510 510 OXL OXL . R 5 ATP B 1 1001 1001 ATP ATP . S 2 MG C 1 502 502 MG MG . T 3 K C 1 504 504 K K . U 4 OXL C 1 510 510 OXL OXL . V 5 ATP C 1 1001 1001 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . V 5 54.728 -56.036 -60.146 1 177.73 ? PG ATP 1001 C 1 HETATM 2 O O1G ATP . . . V 5 54.567 -55.509 -61.553 1 177.62 ? O1G ATP 1001 C 1 HETATM 3 O O2G ATP . . . V 5 55.096 -57.5 -60.072 1 177.69 ? O2G ATP 1001 C 1 HETATM 4 O O3G ATP . . . V 5 53.612 -55.624 -59.214 1 177.61 ? O3G ATP 1001 C 1 HETATM 5 P PB ATP . . . V 5 56.848 -55.668 -58.269 1 177.86 ? PB ATP 1001 C 1 HETATM 6 O O1B ATP . . . V 5 57.55 -56.978 -58.536 1 177.86 ? O1B ATP 1001 C 1 HETATM 7 O O2B ATP . . . V 5 57.664 -54.463 -57.852 1 177.68 ? O2B ATP 1001 C 1 HETATM 8 O O3B ATP . . . V 5 56.031 -55.25 -59.6 1 177.83 ? O3B ATP 1001 C 1 HETATM 9 P PA ATP . . . V 5 55.84 -56.91 -55.91 1 177.62 ? PA ATP 1001 C 1 HETATM 10 O O1A ATP . . . V 5 56.03 -58.317 -56.426 1 177.62 ? O1A ATP 1001 C 1 HETATM 11 O O2A ATP . . . V 5 54.705 -56.631 -54.953 1 177.56 ? O2A ATP 1001 C 1 HETATM 12 O O3A ATP . . . V 5 55.686 -55.91 -57.171 1 177.76 ? O3A ATP 1001 C 1 HETATM 13 O O5' ATP . . . V 5 57.216 -56.438 -55.21 1 177.47 ? O5' ATP 1001 C 1 HETATM 14 C C5' ATP . . . V 5 57.335 -55.161 -54.583 1 177.16 ? C5' ATP 1001 C 1 HETATM 15 C C4' ATP . . . V 5 58.43 -55.195 -53.523 1 176.98 ? C4' ATP 1001 C 1 HETATM 16 O O4' ATP . . . V 5 59.391 -54.161 -53.773 1 176.89 ? O4' ATP 1001 C 1 HETATM 17 C C3' ATP . . . V 5 57.855 -54.965 -52.134 1 176.93 ? C3' ATP 1001 C 1 HETATM 18 O O3' ATP . . . V 5 57.971 -56.157 -51.347 1 176.91 ? O3' ATP 1001 C 1 HETATM 19 C C2' ATP . . . V 5 58.65 -53.813 -51.538 1 176.94 ? C2' ATP 1001 C 1 HETATM 20 O O2' ATP . . . V 5 59.402 -54.22 -50.39 1 177.04 ? O2' ATP 1001 C 1 HETATM 21 C C1' ATP . . . V 5 59.593 -53.319 -52.629 1 176.73 ? C1' ATP 1001 C 1 HETATM 22 N N9 ATP . . . V 5 59.299 -51.891 -52.948 1 176.48 ? N9 ATP 1001 C 1 HETATM 23 C C8 ATP . . . V 5 59.284 -50.88 -52.054 1 176.33 ? C8 ATP 1001 C 1 HETATM 24 N N7 ATP . . . V 5 58.977 -49.697 -52.641 1 176.28 ? N7 ATP 1001 C 1 HETATM 25 C C5 ATP . . . V 5 58.79 -49.94 -53.95 1 176.38 ? C5 ATP 1001 C 1 HETATM 26 C C6 ATP . . . V 5 58.444 -49.133 -55.147 1 176.43 ? C6 ATP 1001 C 1 HETATM 27 N N6 ATP . . . V 5 58.234 -47.8 -55.045 1 176.46 ? N6 ATP 1001 C 1 HETATM 28 N N1 ATP . . . V 5 58.342 -49.769 -56.342 1 176.5 ? N1 ATP 1001 C 1 HETATM 29 C C2 ATP . . . V 5 58.548 -51.099 -56.457 1 176.51 ? C2 ATP 1001 C 1 HETATM 30 N N3 ATP . . . V 5 58.867 -51.89 -55.412 1 176.52 ? N3 ATP 1001 C 1 HETATM 31 C C4 ATP . . . V 5 59.002 -51.385 -54.153 1 176.44 ? C4 ATP 1001 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #