data_3HQR # _model_server_result.job_id 4orUvm1ol0xnnFdbu5YZvw _model_server_result.datetime_utc '2024-11-24 05:51:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 3HQR # _exptl.entry_id 3HQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.086 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OXALYLGLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HQR _cell.length_a 39.379 _cell.length_b 68.798 _cell.length_c 72.221 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 201 1_555 A SG CYS 28 A CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASP 135 A ASP 315 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc2 C MN MN . A MN 501 1_555 D O2 OGA . A OGA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc3 C MN MN . A MN 501 1_555 D O2' OGA . A OGA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 C MN MN . A MN 501 1_555 E O HOH . A HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C4 H5 N O5' _chem_comp.formula_weight 147.086 _chem_comp.id OGA _chem_comp.mon_nstd_flag . _chem_comp.name N-OXALYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OGA sing 237 n n C1 O1 OGA doub 238 n n C1 O2 OGA sing 239 n n C2 O2' OGA doub 240 n n C2 N1 OGA sing 241 n n C4 C5 OGA sing 242 n n C4 N1 OGA sing 243 n n C4 H4C1 OGA sing 244 n n C4 H4C2 OGA sing 245 n n C5 O3 OGA sing 246 n n C5 O4 OGA doub 247 n n O2 H2 OGA sing 248 n n O3 H3 OGA sing 249 n n N1 H1 OGA sing 250 n n # _atom_sites.entry_id 3HQR _atom_sites.fract_transf_matrix[1][1] 0.025394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 501 501 MN MN . D 4 OGA A 1 600 600 OGA OGA . E 5 HOH A 1 1001 1001 HOH HOH . E 5 HOH A 2 1002 1002 HOH HOH . E 5 HOH A 3 1003 1003 HOH HOH . E 5 HOH A 4 1004 1004 HOH HOH . E 5 HOH A 5 1005 1005 HOH HOH . E 5 HOH A 6 1006 1006 HOH HOH . E 5 HOH A 7 1007 1007 HOH HOH . E 5 HOH A 8 1008 1008 HOH HOH . E 5 HOH A 9 1009 1009 HOH HOH . E 5 HOH A 10 1010 1010 HOH HOH . E 5 HOH A 11 1011 1011 HOH HOH . E 5 HOH A 12 1012 1012 HOH HOH . E 5 HOH A 13 1013 1013 HOH HOH . E 5 HOH A 14 1014 1014 HOH HOH . E 5 HOH A 15 1015 1015 HOH HOH . E 5 HOH A 16 1016 1016 HOH HOH . E 5 HOH A 17 1017 1017 HOH HOH . E 5 HOH A 18 1018 1018 HOH HOH . E 5 HOH A 19 1019 1019 HOH HOH . E 5 HOH A 20 1020 1020 HOH HOH . E 5 HOH A 21 1021 1021 HOH HOH . E 5 HOH A 22 1022 1022 HOH HOH . E 5 HOH A 23 1023 1023 HOH HOH . E 5 HOH A 24 1024 1024 HOH HOH . E 5 HOH A 25 1025 1025 HOH HOH . E 5 HOH A 26 1026 1026 HOH HOH . E 5 HOH A 27 1027 1027 HOH HOH . E 5 HOH A 28 1028 1028 HOH HOH . E 5 HOH A 29 1029 1029 HOH HOH . E 5 HOH A 30 1030 1030 HOH HOH . E 5 HOH A 31 1031 1031 HOH HOH . E 5 HOH A 32 1032 1032 HOH HOH . E 5 HOH A 33 1033 1033 HOH HOH . E 5 HOH A 34 1034 1034 HOH HOH . E 5 HOH A 35 1035 1035 HOH HOH . E 5 HOH A 36 1036 1036 HOH HOH . E 5 HOH A 37 1037 1037 HOH HOH . E 5 HOH A 38 1038 1038 HOH HOH . E 5 HOH A 39 1039 1039 HOH HOH . E 5 HOH A 40 1040 1040 HOH HOH . E 5 HOH A 41 1041 1041 HOH HOH . E 5 HOH A 42 1042 1042 HOH HOH . E 5 HOH A 43 1043 1043 HOH HOH . E 5 HOH A 44 1044 1044 HOH HOH . E 5 HOH A 45 1045 1045 HOH HOH . E 5 HOH A 46 1046 1046 HOH HOH . E 5 HOH A 47 1047 1047 HOH HOH . E 5 HOH A 48 1048 1048 HOH HOH . E 5 HOH A 49 1049 1049 HOH HOH . E 5 HOH A 50 1050 1050 HOH HOH . E 5 HOH A 51 1051 1051 HOH HOH . E 5 HOH A 52 1052 1052 HOH HOH . E 5 HOH A 53 1053 1053 HOH HOH . E 5 HOH A 54 1054 1054 HOH HOH . E 5 HOH A 55 1055 1055 HOH HOH . E 5 HOH A 56 1056 1056 HOH HOH . E 5 HOH A 57 1057 1057 HOH HOH . E 5 HOH A 58 1058 1058 HOH HOH . E 5 HOH A 59 1059 1059 HOH HOH . E 5 HOH A 60 1060 1060 HOH HOH . E 5 HOH A 61 1061 1061 HOH HOH . E 5 HOH A 62 1062 1062 HOH HOH . E 5 HOH A 63 1063 1063 HOH HOH . E 5 HOH A 64 1064 1064 HOH HOH . E 5 HOH A 65 1065 1065 HOH HOH . E 5 HOH A 66 1066 1066 HOH HOH . E 5 HOH A 67 1067 1067 HOH HOH . E 5 HOH A 68 1068 1068 HOH HOH . E 5 HOH A 69 1069 1069 HOH HOH . E 5 HOH A 70 1070 1070 HOH HOH . E 5 HOH A 71 1071 1071 HOH HOH . E 5 HOH A 72 1072 1072 HOH HOH . E 5 HOH A 73 1073 1073 HOH HOH . E 5 HOH A 74 1074 1074 HOH HOH . E 5 HOH A 75 1075 1075 HOH HOH . E 5 HOH A 76 1076 1076 HOH HOH . E 5 HOH A 77 1077 1077 HOH HOH . E 5 HOH A 78 1078 1078 HOH HOH . E 5 HOH A 79 1079 1079 HOH HOH . E 5 HOH A 80 1080 1080 HOH HOH . E 5 HOH A 81 1081 1081 HOH HOH . E 5 HOH A 82 1082 1082 HOH HOH . E 5 HOH A 83 1083 1083 HOH HOH . E 5 HOH A 84 1084 1084 HOH HOH . E 5 HOH A 85 1085 1085 HOH HOH . E 5 HOH A 86 1086 1086 HOH HOH . E 5 HOH A 87 1087 1087 HOH HOH . E 5 HOH A 88 1088 1088 HOH HOH . E 5 HOH A 89 1089 1089 HOH HOH . E 5 HOH A 90 1090 1090 HOH HOH . E 5 HOH A 91 1091 1091 HOH HOH . E 5 HOH A 92 1092 1092 HOH HOH . E 5 HOH A 93 1093 1093 HOH HOH . E 5 HOH A 94 1094 1094 HOH HOH . E 5 HOH A 95 1096 1096 HOH HOH . E 5 HOH A 96 1097 1097 HOH HOH . E 5 HOH A 97 1098 1098 HOH HOH . E 5 HOH A 98 1099 1099 HOH HOH . E 5 HOH A 99 1100 1100 HOH HOH . E 5 HOH A 100 1101 1101 HOH HOH . E 5 HOH A 101 1102 1102 HOH HOH . E 5 HOH A 102 1103 1103 HOH HOH . E 5 HOH A 103 1104 1104 HOH HOH . E 5 HOH A 104 1105 1105 HOH HOH . E 5 HOH A 105 1106 1106 HOH HOH . E 5 HOH A 106 1107 1107 HOH HOH . E 5 HOH A 107 1108 1108 HOH HOH . E 5 HOH A 108 1109 1109 HOH HOH . E 5 HOH A 109 1110 1110 HOH HOH . E 5 HOH A 110 1111 1111 HOH HOH . E 5 HOH A 111 1112 1112 HOH HOH . E 5 HOH A 112 1113 1113 HOH HOH . E 5 HOH A 113 1114 1114 HOH HOH . E 5 HOH A 114 1115 1115 HOH HOH . E 5 HOH A 115 1117 1117 HOH HOH . E 5 HOH A 116 1118 1118 HOH HOH . E 5 HOH A 117 1119 1119 HOH HOH . E 5 HOH A 118 1120 1120 HOH HOH . E 5 HOH A 119 1121 1121 HOH HOH . E 5 HOH A 120 1122 1122 HOH HOH . E 5 HOH A 121 1123 1123 HOH HOH . E 5 HOH A 122 1125 1125 HOH HOH . E 5 HOH A 123 1127 1127 HOH HOH . E 5 HOH A 124 1128 1128 HOH HOH . E 5 HOH A 125 1129 1129 HOH HOH . E 5 HOH A 126 1130 1130 HOH HOH . E 5 HOH A 127 1131 1131 HOH HOH . E 5 HOH A 128 1132 1132 HOH HOH . E 5 HOH A 129 1133 1133 HOH HOH . E 5 HOH A 130 1134 1134 HOH HOH . E 5 HOH A 131 1135 1135 HOH HOH . E 5 HOH A 132 1136 1136 HOH HOH . E 5 HOH A 133 1137 1137 HOH HOH . E 5 HOH A 134 1138 1138 HOH HOH . E 5 HOH A 135 1139 1139 HOH HOH . E 5 HOH A 136 1140 1140 HOH HOH . E 5 HOH A 137 1141 1141 HOH HOH . E 5 HOH A 138 1142 1142 HOH HOH . E 5 HOH A 139 1143 1143 HOH HOH . E 5 HOH A 140 1144 1144 HOH HOH . E 5 HOH A 141 1145 1145 HOH HOH . E 5 HOH A 142 1146 1146 HOH HOH . E 5 HOH A 143 1147 1147 HOH HOH . E 5 HOH A 144 1148 1148 HOH HOH . E 5 HOH A 145 1149 1149 HOH HOH . E 5 HOH A 146 1150 1150 HOH HOH . E 5 HOH A 147 1151 1151 HOH HOH . E 5 HOH A 148 1152 1152 HOH HOH . E 5 HOH A 149 1153 1153 HOH HOH . E 5 HOH A 150 1154 1154 HOH HOH . E 5 HOH A 151 1155 1155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OGA . . . D 4 20.152 -6.286 -6.802 1 19.22 ? C1 OGA 600 A 1 HETATM 2 C C2 OGA . . . D 4 20.179 -6.288 -5.317 1 21.86 ? C2 OGA 600 A 1 HETATM 3 C C4 OGA . . . D 4 19.094 -6.197 -3.138 1 17.28 ? C4 OGA 600 A 1 HETATM 4 C C5 OGA . . . D 4 17.723 -6.158 -2.553 1 15.29 ? C5 OGA 600 A 1 HETATM 5 O O1 OGA . . . D 4 19.104 -6.246 -7.402 1 17.44 ? O1 OGA 600 A 1 HETATM 6 O O2 OGA . . . D 4 21.311 -6.319 -7.466 1 23.41 ? O2 OGA 600 A 1 HETATM 7 O O2' OGA . . . D 4 21.253 -6.33 -4.752 1 20.32 ? O2' OGA 600 A 1 HETATM 8 O O3 OGA . . . D 4 17.597 -6.116 -1.23 1 19.72 ? O3 OGA 600 A 1 HETATM 9 N N1 OGA . . . D 4 19.035 -6.233 -4.606 1 21.33 ? N1 OGA 600 A 1 HETATM 10 O O4 OGA . . . D 4 16.736 -6.169 -3.26 1 19.99 ? O4 OGA 600 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #