data_3HRC # _model_server_result.job_id k0F0PYMZTpj1-Mb7toixPA _model_server_result.datetime_utc '2024-12-02 13:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hrc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1373}' # _entry.id 3HRC # _exptl.entry_id 3HRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.5 _cell.angle_gamma 90 _cell.entry_id 3HRC _cell.length_a 148.08 _cell.length_b 43.79 _cell.length_c 47.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 192 A ASN 240 1_555 A N SEP 193 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 193 A SEP 241 1_555 A N PHE 194 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3HRC _atom_sites.fract_transf_matrix[1][1] 0.006753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001374 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1373 1373 ATP ATP . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 360 49 HOH HOH . C 3 HOH A 50 361 50 HOH HOH . C 3 HOH A 51 362 51 HOH HOH . C 3 HOH A 52 363 52 HOH HOH . C 3 HOH A 53 364 53 HOH HOH . C 3 HOH A 54 365 54 HOH HOH . C 3 HOH A 55 366 55 HOH HOH . C 3 HOH A 56 367 56 HOH HOH . C 3 HOH A 57 368 57 HOH HOH . C 3 HOH A 58 369 58 HOH HOH . C 3 HOH A 59 370 59 HOH HOH . C 3 HOH A 60 371 60 HOH HOH . C 3 HOH A 61 372 61 HOH HOH . C 3 HOH A 62 373 62 HOH HOH . C 3 HOH A 63 374 63 HOH HOH . C 3 HOH A 64 375 64 HOH HOH . C 3 HOH A 65 376 65 HOH HOH . C 3 HOH A 66 377 66 HOH HOH . C 3 HOH A 67 378 67 HOH HOH . C 3 HOH A 68 379 68 HOH HOH . C 3 HOH A 69 380 69 HOH HOH . C 3 HOH A 70 381 70 HOH HOH . C 3 HOH A 71 382 71 HOH HOH . C 3 HOH A 72 383 72 HOH HOH . C 3 HOH A 73 384 73 HOH HOH . C 3 HOH A 74 385 74 HOH HOH . C 3 HOH A 75 386 75 HOH HOH . C 3 HOH A 76 387 77 HOH HOH . C 3 HOH A 77 388 78 HOH HOH . C 3 HOH A 78 389 79 HOH HOH . C 3 HOH A 79 390 80 HOH HOH . C 3 HOH A 80 391 81 HOH HOH . C 3 HOH A 81 392 82 HOH HOH . C 3 HOH A 82 393 83 HOH HOH . C 3 HOH A 83 394 84 HOH HOH . C 3 HOH A 84 395 85 HOH HOH . C 3 HOH A 85 396 86 HOH HOH . C 3 HOH A 86 397 87 HOH HOH . C 3 HOH A 87 398 88 HOH HOH . C 3 HOH A 88 399 89 HOH HOH . C 3 HOH A 89 400 90 HOH HOH . C 3 HOH A 90 401 91 HOH HOH . C 3 HOH A 91 402 92 HOH HOH . C 3 HOH A 92 403 93 HOH HOH . C 3 HOH A 93 404 94 HOH HOH . C 3 HOH A 94 405 95 HOH HOH . C 3 HOH A 95 406 96 HOH HOH . C 3 HOH A 96 407 97 HOH HOH . C 3 HOH A 97 408 98 HOH HOH . C 3 HOH A 98 409 99 HOH HOH . C 3 HOH A 99 410 100 HOH HOH . C 3 HOH A 100 411 101 HOH HOH . C 3 HOH A 101 412 102 HOH HOH . C 3 HOH A 102 413 103 HOH HOH . C 3 HOH A 103 414 104 HOH HOH . C 3 HOH A 104 415 105 HOH HOH . C 3 HOH A 105 416 106 HOH HOH . C 3 HOH A 106 417 107 HOH HOH . C 3 HOH A 107 418 108 HOH HOH . C 3 HOH A 108 419 109 HOH HOH . C 3 HOH A 109 420 110 HOH HOH . C 3 HOH A 110 421 111 HOH HOH . C 3 HOH A 111 422 112 HOH HOH . C 3 HOH A 112 423 113 HOH HOH . C 3 HOH A 113 424 115 HOH HOH . C 3 HOH A 114 425 116 HOH HOH . C 3 HOH A 115 426 118 HOH HOH . C 3 HOH A 116 427 119 HOH HOH . C 3 HOH A 117 428 120 HOH HOH . C 3 HOH A 118 429 121 HOH HOH . C 3 HOH A 119 430 122 HOH HOH . C 3 HOH A 120 431 123 HOH HOH . C 3 HOH A 121 432 124 HOH HOH . C 3 HOH A 122 433 125 HOH HOH . C 3 HOH A 123 434 126 HOH HOH . C 3 HOH A 124 435 127 HOH HOH . C 3 HOH A 125 436 128 HOH HOH . C 3 HOH A 126 437 130 HOH HOH . C 3 HOH A 127 438 131 HOH HOH . C 3 HOH A 128 439 132 HOH HOH . C 3 HOH A 129 440 133 HOH HOH . C 3 HOH A 130 441 135 HOH HOH . C 3 HOH A 131 442 136 HOH HOH . C 3 HOH A 132 443 137 HOH HOH . C 3 HOH A 133 444 138 HOH HOH . C 3 HOH A 134 445 139 HOH HOH . C 3 HOH A 135 446 140 HOH HOH . C 3 HOH A 136 447 141 HOH HOH . C 3 HOH A 137 448 142 HOH HOH . C 3 HOH A 138 449 143 HOH HOH . C 3 HOH A 139 450 144 HOH HOH . C 3 HOH A 140 451 145 HOH HOH . C 3 HOH A 141 452 146 HOH HOH . C 3 HOH A 142 453 147 HOH HOH . C 3 HOH A 143 454 148 HOH HOH . C 3 HOH A 144 455 149 HOH HOH . C 3 HOH A 145 456 150 HOH HOH . C 3 HOH A 146 457 151 HOH HOH . C 3 HOH A 147 458 152 HOH HOH . C 3 HOH A 148 459 153 HOH HOH . C 3 HOH A 149 460 154 HOH HOH . C 3 HOH A 150 461 155 HOH HOH . C 3 HOH A 151 462 156 HOH HOH . C 3 HOH A 152 463 157 HOH HOH . C 3 HOH A 153 464 158 HOH HOH . C 3 HOH A 154 465 159 HOH HOH . C 3 HOH A 155 466 160 HOH HOH . C 3 HOH A 156 467 161 HOH HOH . C 3 HOH A 157 468 163 HOH HOH . C 3 HOH A 158 469 164 HOH HOH . C 3 HOH A 159 470 166 HOH HOH . C 3 HOH A 160 471 167 HOH HOH . C 3 HOH A 161 472 168 HOH HOH . C 3 HOH A 162 473 169 HOH HOH . C 3 HOH A 163 474 171 HOH HOH . C 3 HOH A 164 475 172 HOH HOH . C 3 HOH A 165 476 174 HOH HOH . C 3 HOH A 166 477 175 HOH HOH . C 3 HOH A 167 478 176 HOH HOH . C 3 HOH A 168 479 177 HOH HOH . C 3 HOH A 169 480 178 HOH HOH . C 3 HOH A 170 481 179 HOH HOH . C 3 HOH A 171 482 180 HOH HOH . C 3 HOH A 172 483 181 HOH HOH . C 3 HOH A 173 484 182 HOH HOH . C 3 HOH A 174 485 183 HOH HOH . C 3 HOH A 175 486 184 HOH HOH . C 3 HOH A 176 487 185 HOH HOH . C 3 HOH A 177 488 186 HOH HOH . C 3 HOH A 178 489 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 28.279 -18.687 -13.728 1 48.8 ? PG ATP 1373 A 1 HETATM 2 O O1G ATP . . . B 2 27.152 -17.714 -14 1 49.93 ? O1G ATP 1373 A 1 HETATM 3 O O2G ATP . . . B 2 29.035 -18.413 -12.453 1 50.27 ? O2G ATP 1373 A 1 HETATM 4 O O3G ATP . . . B 2 29.167 -18.981 -14.911 1 49.47 ? O3G ATP 1373 A 1 HETATM 5 P PB ATP . . . B 2 26.234 -20.67 -14.097 1 42.02 ? PB ATP 1373 A 1 HETATM 6 O O1B ATP . . . B 2 26.299 -22.151 -13.787 1 38.53 ? O1B ATP 1373 A 1 HETATM 7 O O2B ATP . . . B 2 26.125 -20.141 -15.495 1 40.71 ? O2B ATP 1373 A 1 HETATM 8 O O3B ATP . . . B 2 27.583 -20.106 -13.396 1 46.08 ? O3B ATP 1373 A 1 HETATM 9 P PA ATP . . . B 2 23.464 -20.041 -13.436 1 36.75 ? PA ATP 1373 A 1 HETATM 10 O O1A ATP . . . B 2 22.794 -19.393 -12.245 1 38.57 ? O1A ATP 1373 A 1 HETATM 11 O O2A ATP . . . B 2 23.102 -19.516 -14.808 1 38.02 ? O2A ATP 1373 A 1 HETATM 12 O O3A ATP . . . B 2 25.074 -19.915 -13.235 1 40.91 ? O3A ATP 1373 A 1 HETATM 13 O O5' ATP . . . B 2 23.219 -21.618 -13.406 1 33.73 ? O5' ATP 1373 A 1 HETATM 14 C C5' ATP . . . B 2 23.529 -22.416 -12.276 1 32.66 ? C5' ATP 1373 A 1 HETATM 15 C C4' ATP . . . B 2 23.34 -23.895 -12.585 1 32.28 ? C4' ATP 1373 A 1 HETATM 16 O O4' ATP . . . B 2 21.966 -24.29 -12.412 1 30.8 ? O4' ATP 1373 A 1 HETATM 17 C C3' ATP . . . B 2 23.712 -24.297 -14.014 1 32.62 ? C3' ATP 1373 A 1 HETATM 18 O O3' ATP . . . B 2 25.111 -24.576 -14.129 1 36.39 ? O3' ATP 1373 A 1 HETATM 19 C C2' ATP . . . B 2 22.828 -25.503 -14.29 1 31.22 ? C2' ATP 1373 A 1 HETATM 20 O O2' ATP . . . B 2 23.44 -26.739 -13.867 1 30.74 ? O2' ATP 1373 A 1 HETATM 21 C C1' ATP . . . B 2 21.592 -25.223 -13.44 1 27.38 ? C1' ATP 1373 A 1 HETATM 22 N N9 ATP . . . B 2 20.546 -24.558 -14.263 1 23.23 ? N9 ATP 1373 A 1 HETATM 23 C C8 ATP . . . B 2 20.589 -23.301 -14.763 1 20.68 ? C8 ATP 1373 A 1 HETATM 24 N N7 ATP . . . B 2 19.462 -23.013 -15.458 1 21.06 ? N7 ATP 1373 A 1 HETATM 25 C C5 ATP . . . B 2 18.683 -24.112 -15.395 1 18.86 ? C5 ATP 1373 A 1 HETATM 26 C C6 ATP . . . B 2 17.348 -24.498 -15.916 1 15.24 ? C6 ATP 1373 A 1 HETATM 27 N N6 ATP . . . B 2 16.64 -23.615 -16.65 1 13.62 ? N6 ATP 1373 A 1 HETATM 28 N N1 ATP . . . B 2 16.898 -25.732 -15.63 1 15.59 ? N1 ATP 1373 A 1 HETATM 29 C C2 ATP . . . B 2 17.611 -26.616 -14.901 1 19.2 ? C2 ATP 1373 A 1 HETATM 30 N N3 ATP . . . B 2 18.834 -26.341 -14.398 1 19.33 ? N3 ATP 1373 A 1 HETATM 31 C C4 ATP . . . B 2 19.4 -25.122 -14.605 1 19.76 ? C4 ATP 1373 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #