data_3HRF # _model_server_result.job_id 1t_BQmtsHDF2e4lGCZURCQ _model_server_result.datetime_utc '2024-12-04 04:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1373}' # _entry.id 3HRF # _exptl.entry_id 3HRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.42 _cell.angle_gamma 90 _cell.entry_id 3HRF _cell.length_a 148.55 _cell.length_b 44 _cell.length_c 47.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 192 A ASN 240 1_555 A N SEP 193 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 193 A SEP 241 1_555 A N PHE 194 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3HRF _atom_sites.fract_transf_matrix[1][1] 0.006732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1373 1373 ATP ATP . C 3 P47 A 1 1374 1374 P47 P47 . D 4 EPE A 1 1375 1375 EPE EPE . E 4 EPE A 1 1376 1376 EPE EPE . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 4 4 HOH HOH . F 5 HOH A 4 5 5 HOH HOH . F 5 HOH A 5 6 6 HOH HOH . F 5 HOH A 6 7 7 HOH HOH . F 5 HOH A 7 8 8 HOH HOH . F 5 HOH A 8 9 9 HOH HOH . F 5 HOH A 9 10 10 HOH HOH . F 5 HOH A 10 11 11 HOH HOH . F 5 HOH A 11 12 12 HOH HOH . F 5 HOH A 12 13 13 HOH HOH . F 5 HOH A 13 14 14 HOH HOH . F 5 HOH A 14 15 15 HOH HOH . F 5 HOH A 15 16 16 HOH HOH . F 5 HOH A 16 17 17 HOH HOH . F 5 HOH A 17 18 18 HOH HOH . F 5 HOH A 18 19 19 HOH HOH . F 5 HOH A 19 20 20 HOH HOH . F 5 HOH A 20 21 21 HOH HOH . F 5 HOH A 21 22 22 HOH HOH . F 5 HOH A 22 23 23 HOH HOH . F 5 HOH A 23 24 24 HOH HOH . F 5 HOH A 24 25 25 HOH HOH . F 5 HOH A 25 26 26 HOH HOH . F 5 HOH A 26 27 27 HOH HOH . F 5 HOH A 27 28 28 HOH HOH . F 5 HOH A 28 29 29 HOH HOH . F 5 HOH A 29 30 30 HOH HOH . F 5 HOH A 30 31 31 HOH HOH . F 5 HOH A 31 32 32 HOH HOH . F 5 HOH A 32 33 33 HOH HOH . F 5 HOH A 33 34 34 HOH HOH . F 5 HOH A 34 35 35 HOH HOH . F 5 HOH A 35 36 36 HOH HOH . F 5 HOH A 36 37 37 HOH HOH . F 5 HOH A 37 38 38 HOH HOH . F 5 HOH A 38 39 39 HOH HOH . F 5 HOH A 39 40 40 HOH HOH . F 5 HOH A 40 41 41 HOH HOH . F 5 HOH A 41 42 42 HOH HOH . F 5 HOH A 42 43 43 HOH HOH . F 5 HOH A 43 44 44 HOH HOH . F 5 HOH A 44 45 45 HOH HOH . F 5 HOH A 45 46 46 HOH HOH . F 5 HOH A 46 47 47 HOH HOH . F 5 HOH A 47 48 48 HOH HOH . F 5 HOH A 48 360 360 HOH HOH . F 5 HOH A 49 361 49 HOH HOH . F 5 HOH A 50 362 362 HOH HOH . F 5 HOH A 51 363 363 HOH HOH . F 5 HOH A 52 364 364 HOH HOH . F 5 HOH A 53 365 365 HOH HOH . F 5 HOH A 54 366 366 HOH HOH . F 5 HOH A 55 367 367 HOH HOH . F 5 HOH A 56 368 368 HOH HOH . F 5 HOH A 57 369 369 HOH HOH . F 5 HOH A 58 370 370 HOH HOH . F 5 HOH A 59 371 371 HOH HOH . F 5 HOH A 60 372 372 HOH HOH . F 5 HOH A 61 373 373 HOH HOH . F 5 HOH A 62 374 374 HOH HOH . F 5 HOH A 63 375 375 HOH HOH . F 5 HOH A 64 376 376 HOH HOH . F 5 HOH A 65 377 377 HOH HOH . F 5 HOH A 66 378 378 HOH HOH . F 5 HOH A 67 379 379 HOH HOH . F 5 HOH A 68 380 380 HOH HOH . F 5 HOH A 69 381 381 HOH HOH . F 5 HOH A 70 382 382 HOH HOH . F 5 HOH A 71 383 383 HOH HOH . F 5 HOH A 72 384 384 HOH HOH . F 5 HOH A 73 385 385 HOH HOH . F 5 HOH A 74 386 386 HOH HOH . F 5 HOH A 75 387 387 HOH HOH . F 5 HOH A 76 388 388 HOH HOH . F 5 HOH A 77 389 389 HOH HOH . F 5 HOH A 78 390 390 HOH HOH . F 5 HOH A 79 391 391 HOH HOH . F 5 HOH A 80 392 392 HOH HOH . F 5 HOH A 81 393 393 HOH HOH . F 5 HOH A 82 394 394 HOH HOH . F 5 HOH A 83 395 395 HOH HOH . F 5 HOH A 84 396 396 HOH HOH . F 5 HOH A 85 397 397 HOH HOH . F 5 HOH A 86 398 398 HOH HOH . F 5 HOH A 87 399 399 HOH HOH . F 5 HOH A 88 400 400 HOH HOH . F 5 HOH A 89 401 401 HOH HOH . F 5 HOH A 90 402 402 HOH HOH . F 5 HOH A 91 403 403 HOH HOH . F 5 HOH A 92 404 404 HOH HOH . F 5 HOH A 93 405 405 HOH HOH . F 5 HOH A 94 406 406 HOH HOH . F 5 HOH A 95 407 407 HOH HOH . F 5 HOH A 96 408 408 HOH HOH . F 5 HOH A 97 409 409 HOH HOH . F 5 HOH A 98 410 410 HOH HOH . F 5 HOH A 99 411 411 HOH HOH . F 5 HOH A 100 412 412 HOH HOH . F 5 HOH A 101 413 413 HOH HOH . F 5 HOH A 102 414 414 HOH HOH . F 5 HOH A 103 415 415 HOH HOH . F 5 HOH A 104 416 416 HOH HOH . F 5 HOH A 105 417 417 HOH HOH . F 5 HOH A 106 418 418 HOH HOH . F 5 HOH A 107 419 419 HOH HOH . F 5 HOH A 108 420 420 HOH HOH . F 5 HOH A 109 421 421 HOH HOH . F 5 HOH A 110 422 422 HOH HOH . F 5 HOH A 111 423 423 HOH HOH . F 5 HOH A 112 424 424 HOH HOH . F 5 HOH A 113 425 425 HOH HOH . F 5 HOH A 114 426 426 HOH HOH . F 5 HOH A 115 427 427 HOH HOH . F 5 HOH A 116 428 428 HOH HOH . F 5 HOH A 117 429 429 HOH HOH . F 5 HOH A 118 430 430 HOH HOH . F 5 HOH A 119 431 431 HOH HOH . F 5 HOH A 120 432 50 HOH HOH . F 5 HOH A 121 433 433 HOH HOH . F 5 HOH A 122 434 434 HOH HOH . F 5 HOH A 123 435 435 HOH HOH . F 5 HOH A 124 436 436 HOH HOH . F 5 HOH A 125 437 437 HOH HOH . F 5 HOH A 126 438 438 HOH HOH . F 5 HOH A 127 439 439 HOH HOH . F 5 HOH A 128 440 440 HOH HOH . F 5 HOH A 129 441 441 HOH HOH . F 5 HOH A 130 442 442 HOH HOH . F 5 HOH A 131 443 443 HOH HOH . F 5 HOH A 132 444 444 HOH HOH . F 5 HOH A 133 447 447 HOH HOH . F 5 HOH A 134 448 448 HOH HOH . F 5 HOH A 135 449 449 HOH HOH . F 5 HOH A 136 451 451 HOH HOH . F 5 HOH A 137 452 452 HOH HOH . F 5 HOH A 138 453 453 HOH HOH . F 5 HOH A 139 454 454 HOH HOH . F 5 HOH A 140 455 455 HOH HOH . F 5 HOH A 141 456 456 HOH HOH . F 5 HOH A 142 457 457 HOH HOH . F 5 HOH A 143 459 459 HOH HOH . F 5 HOH A 144 461 461 HOH HOH . F 5 HOH A 145 462 462 HOH HOH . F 5 HOH A 146 463 463 HOH HOH . F 5 HOH A 147 464 464 HOH HOH . F 5 HOH A 148 465 465 HOH HOH . F 5 HOH A 149 467 467 HOH HOH . F 5 HOH A 150 468 468 HOH HOH . F 5 HOH A 151 469 469 HOH HOH . F 5 HOH A 152 470 470 HOH HOH . F 5 HOH A 153 471 471 HOH HOH . F 5 HOH A 154 472 472 HOH HOH . F 5 HOH A 155 473 473 HOH HOH . F 5 HOH A 156 474 474 HOH HOH . F 5 HOH A 157 475 475 HOH HOH . F 5 HOH A 158 476 476 HOH HOH . F 5 HOH A 159 477 477 HOH HOH . F 5 HOH A 160 478 478 HOH HOH . F 5 HOH A 161 479 479 HOH HOH . F 5 HOH A 162 480 480 HOH HOH . F 5 HOH A 163 481 481 HOH HOH . F 5 HOH A 164 482 482 HOH HOH . F 5 HOH A 165 483 483 HOH HOH . F 5 HOH A 166 484 484 HOH HOH . F 5 HOH A 167 485 485 HOH HOH . F 5 HOH A 168 486 486 HOH HOH . F 5 HOH A 169 487 487 HOH HOH . F 5 HOH A 170 488 488 HOH HOH . F 5 HOH A 171 489 489 HOH HOH . F 5 HOH A 172 490 490 HOH HOH . F 5 HOH A 173 491 491 HOH HOH . F 5 HOH A 174 492 492 HOH HOH . F 5 HOH A 175 493 493 HOH HOH . F 5 HOH A 176 494 494 HOH HOH . F 5 HOH A 177 495 495 HOH HOH . F 5 HOH A 178 496 496 HOH HOH . F 5 HOH A 179 497 497 HOH HOH . F 5 HOH A 180 498 498 HOH HOH . F 5 HOH A 181 499 499 HOH HOH . F 5 HOH A 182 500 500 HOH HOH . F 5 HOH A 183 501 501 HOH HOH . F 5 HOH A 184 502 502 HOH HOH . F 5 HOH A 185 503 503 HOH HOH . F 5 HOH A 186 504 504 HOH HOH . F 5 HOH A 187 505 505 HOH HOH . F 5 HOH A 188 506 506 HOH HOH . F 5 HOH A 189 509 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 28 -18.666 -14.122 1 36.8 ? PG ATP 1373 A 1 HETATM 2 O O1G ATP . . . B 2 26.964 -17.556 -14.078 1 36.6 ? O1G ATP 1373 A 1 HETATM 3 O O2G ATP . . . B 2 28.974 -18.65 -12.963 1 37.32 ? O2G ATP 1373 A 1 HETATM 4 O O3G ATP . . . B 2 28.662 -18.891 -15.472 1 38.29 ? O3G ATP 1373 A 1 HETATM 5 P PB ATP . . . B 2 25.851 -20.554 -14.531 1 34.07 ? PB ATP 1373 A 1 HETATM 6 O O1B ATP . . . B 2 25.906 -22.05 -14.309 1 32.8 ? O1B ATP 1373 A 1 HETATM 7 O O2B ATP . . . B 2 25.761 -19.911 -15.881 1 33.11 ? O2B ATP 1373 A 1 HETATM 8 O O3B ATP . . . B 2 27.225 -20.054 -13.846 1 35 ? O3B ATP 1373 A 1 HETATM 9 P PA ATP . . . B 2 23.115 -20.121 -13.694 1 27.85 ? PA ATP 1373 A 1 HETATM 10 O O1A ATP . . . B 2 22.494 -19.58 -12.421 1 27.43 ? O1A ATP 1373 A 1 HETATM 11 O O2A ATP . . . B 2 22.638 -19.606 -15.036 1 27.59 ? O2A ATP 1373 A 1 HETATM 12 O O3A ATP . . . B 2 24.707 -19.905 -13.575 1 30.71 ? O3A ATP 1373 A 1 HETATM 13 O O5' ATP . . . B 2 22.893 -21.713 -13.741 1 25.95 ? O5' ATP 1373 A 1 HETATM 14 C C5' ATP . . . B 2 23.42 -22.528 -12.713 1 23.46 ? C5' ATP 1373 A 1 HETATM 15 C C4' ATP . . . B 2 23.082 -23.973 -13.031 1 24.12 ? C4' ATP 1373 A 1 HETATM 16 O O4' ATP . . . B 2 21.688 -24.193 -12.823 1 21.64 ? O4' ATP 1373 A 1 HETATM 17 C C3' ATP . . . B 2 23.3 -24.377 -14.485 1 23.6 ? C3' ATP 1373 A 1 HETATM 18 O O3' ATP . . . B 2 24.66 -24.704 -14.761 1 28.1 ? O3' ATP 1373 A 1 HETATM 19 C C2' ATP . . . B 2 22.349 -25.545 -14.643 1 23.7 ? C2' ATP 1373 A 1 HETATM 20 O O2' ATP . . . B 2 22.905 -26.77 -14.142 1 24.5 ? O2' ATP 1373 A 1 HETATM 21 C C1' ATP . . . B 2 21.187 -25.16 -13.739 1 20.44 ? C1' ATP 1373 A 1 HETATM 22 N N9 ATP . . . B 2 20.094 -24.546 -14.544 1 17.32 ? N9 ATP 1373 A 1 HETATM 23 C C8 ATP . . . B 2 20.08 -23.302 -15.078 1 17.52 ? C8 ATP 1373 A 1 HETATM 24 N N7 ATP . . . B 2 18.904 -23.088 -15.729 1 17 ? N7 ATP 1373 A 1 HETATM 25 C C5 ATP . . . B 2 18.162 -24.214 -15.621 1 15.21 ? C5 ATP 1373 A 1 HETATM 26 C C6 ATP . . . B 2 16.827 -24.68 -16.071 1 13.19 ? C6 ATP 1373 A 1 HETATM 27 N N6 ATP . . . B 2 16.046 -23.879 -16.817 1 12.92 ? N6 ATP 1373 A 1 HETATM 28 N N1 ATP . . . B 2 16.429 -25.93 -15.727 1 12.74 ? N1 ATP 1373 A 1 HETATM 29 C C2 ATP . . . B 2 17.207 -26.747 -14.997 1 13.08 ? C2 ATP 1373 A 1 HETATM 30 N N3 ATP . . . B 2 18.43 -26.39 -14.565 1 14.54 ? N3 ATP 1373 A 1 HETATM 31 C C4 ATP . . . B 2 18.944 -25.16 -14.829 1 14.8 ? C4 ATP 1373 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #