data_3HRK # _model_server_result.job_id 6ZtmGn-eMb2cvpAY9v50DQ _model_server_result.datetime_utc '2024-10-15 01:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hrk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 3HRK # _exptl.entry_id 3HRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HISTIDYL-ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HRK _cell.length_a 112.36 _cell.length_b 166.987 _cell.length_c 66.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C16 H21 N8 O8 P' _chem_comp.formula_weight 484.361 _chem_comp.id HAM _chem_comp.mon_nstd_flag . _chem_comp.name 'HISTIDYL-ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P HAM doub 129 n n P O2P HAM sing 130 n n P O3P HAM sing 131 n n P O5' HAM sing 132 n n O3P C HAM sing 133 n n O5' C5' HAM sing 134 n n C5' C4' HAM sing 135 n n C5' "H5'1" HAM sing 136 n n C5' "H5'2" HAM sing 137 n n C4' O4' HAM sing 138 n n C4' C3' HAM sing 139 n n C4' H4' HAM sing 140 n n O4' C1' HAM sing 141 n n C3' O3' HAM sing 142 n n C3' C2' HAM sing 143 n n C3' H3' HAM sing 144 n n O3' HO3' HAM sing 145 n n C2' O2' HAM sing 146 n n C2' C1' HAM sing 147 n n C2' H2' HAM sing 148 n n O2' HO2' HAM sing 149 n n C1' N9 HAM sing 150 n n C1' H1' HAM sing 151 n n N9 C8 HAM sing 152 n y N9 C4 HAM sing 153 n y C8 N7 HAM doub 154 n y C8 H8 HAM sing 155 n n N7 C5 HAM sing 156 n y C5 C6 HAM sing 157 n y C5 C4 HAM doub 158 n y C6 N6 HAM sing 159 n n C6 N1 HAM doub 160 n y N6 HN61 HAM sing 161 n n N6 HN62 HAM sing 162 n n N1 C2 HAM sing 163 n y C2 N3 HAM doub 164 n y C2 H2 HAM sing 165 n n N3 C4 HAM sing 166 n y C O HAM doub 167 n n C CA HAM sing 168 n n CA N HAM sing 169 n n CA CB HAM sing 170 n n CA HA HAM sing 171 n n N HN1 HAM sing 172 n n N HN2 HAM sing 173 n n N HN3 HAM sing 174 n n CB CG HAM sing 175 n n CB HB1 HAM sing 176 n n CB HB2 HAM sing 177 n n CG CD2 HAM doub 178 n y CG ND1 HAM sing 179 n y CD2 NE2 HAM sing 180 n y CD2 HD2 HAM sing 181 n n ND1 CE1 HAM doub 182 n y CE1 NE2 HAM sing 183 n y CE1 HE1 HAM sing 184 n n NE2 HE2 HAM sing 185 n n # _atom_sites.entry_id 3HRK _atom_sites.fract_transf_matrix[1][1] 0.0089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HAM A 1 1 1 HAM HAM . D 3 CL A 1 3 3 CL CL . E 2 HAM B 1 2 2 HAM HAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P HAM . . . E 2 27.242 8.76 10.717 0.75 59.21 ? P HAM 2 B 1 HETATM 2 O O1P HAM . . . E 2 26.779 9.311 9.42 0.75 59.21 ? O1P HAM 2 B 1 HETATM 3 O O2P HAM . . . E 2 27.664 7.343 10.779 0.75 60.79 ? O2P HAM 2 B 1 HETATM 4 O O3P HAM . . . E 2 26.134 9.045 11.905 0.75 57.06 ? O3P HAM 2 B 1 HETATM 5 O O5' HAM . . . E 2 28.566 9.515 11.213 0.75 60.21 ? O5' HAM 2 B 1 HETATM 6 C C5' HAM . . . E 2 29.727 9.389 10.406 0.75 61.26 ? C5' HAM 2 B 1 HETATM 7 C C4' HAM . . . E 2 29.938 10.663 9.582 0.75 62.96 ? C4' HAM 2 B 1 HETATM 8 O O4' HAM . . . E 2 29.936 11.867 10.41 0.75 63.16 ? O4' HAM 2 B 1 HETATM 9 C C3' HAM . . . E 2 31.324 10.555 8.94 0.75 63.77 ? C3' HAM 2 B 1 HETATM 10 O O3' HAM . . . E 2 31.18 10.503 7.517 0.75 64.92 ? O3' HAM 2 B 1 HETATM 11 C C2' HAM . . . E 2 32.059 11.827 9.357 0.75 63.8 ? C2' HAM 2 B 1 HETATM 12 O O2' HAM . . . E 2 31.897 12.83 8.359 0.75 63.06 ? O2' HAM 2 B 1 HETATM 13 C C1' HAM . . . E 2 31.323 12.253 10.628 0.75 63.91 ? C1' HAM 2 B 1 HETATM 14 N N9 HAM . . . E 2 31.954 11.663 11.872 0.75 64.65 ? N9 HAM 2 B 1 HETATM 15 C C8 HAM . . . E 2 31.366 10.875 12.776 0.75 64.73 ? C8 HAM 2 B 1 HETATM 16 N N7 HAM . . . E 2 32.225 10.558 13.749 0.75 64.25 ? N7 HAM 2 B 1 HETATM 17 C C5 HAM . . . E 2 33.371 11.153 13.461 0.75 64.58 ? C5 HAM 2 B 1 HETATM 18 C C6 HAM . . . E 2 34.603 11.194 14.09 0.75 64.74 ? C6 HAM 2 B 1 HETATM 19 N N6 HAM . . . E 2 34.795 10.534 15.232 0.75 64.49 ? N6 HAM 2 B 1 HETATM 20 N N1 HAM . . . E 2 35.586 11.917 13.521 0.75 64.6 ? N1 HAM 2 B 1 HETATM 21 C C2 HAM . . . E 2 35.399 12.572 12.382 0.75 64.41 ? C2 HAM 2 B 1 HETATM 22 N N3 HAM . . . E 2 34.233 12.554 11.759 0.75 64.49 ? N3 HAM 2 B 1 HETATM 23 C C4 HAM . . . E 2 33.207 11.854 12.273 0.75 64.71 ? C4 HAM 2 B 1 HETATM 24 C C HAM . . . E 2 25.387 10.174 11.782 0.75 56.31 ? C HAM 2 B 1 HETATM 25 O O HAM . . . E 2 25.736 11.264 12.209 0.75 56.24 ? O HAM 2 B 1 HETATM 26 C CA HAM . . . E 2 24.004 10.007 11.19 0.75 55.62 ? CA HAM 2 B 1 HETATM 27 N N HAM . . . E 2 23.124 10.875 11.97 0.75 55.41 ? N HAM 2 B 1 HETATM 28 C CB HAM . . . E 2 23.998 10.447 9.727 0.75 55.29 ? CB HAM 2 B 1 HETATM 29 C CG HAM . . . E 2 22.605 10.878 9.272 0.75 54.81 ? CG HAM 2 B 1 HETATM 30 C CD2 HAM . . . E 2 22.007 12.035 9.539 0.75 54.17 ? CD2 HAM 2 B 1 HETATM 31 N ND1 HAM . . . E 2 21.774 10.162 8.525 0.75 54.63 ? ND1 HAM 2 B 1 HETATM 32 C CE1 HAM . . . E 2 20.663 10.871 8.335 0.75 54.34 ? CE1 HAM 2 B 1 HETATM 33 N NE2 HAM . . . E 2 20.807 12.031 8.962 0.75 53.99 ? NE2 HAM 2 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 659 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #