data_3HSK # _model_server_result.job_id Y4JB1UesAUQScxOtOwtRWQ _model_server_result.datetime_utc '2024-11-24 02:22:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":366}' # _entry.id 3HSK # _exptl.entry_id 3HSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HSK _cell.length_a 93.412 _cell.length_b 152.18 _cell.length_c 97.762 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 48.881 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 3HSK _atom_sites.fract_transf_matrix[1][1] 0.010705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 366 1 NAP NAP . D 3 HOH A 1 367 1 HOH HOH . D 3 HOH A 2 368 2 HOH HOH . D 3 HOH A 3 369 3 HOH HOH . D 3 HOH A 4 370 6 HOH HOH . D 3 HOH A 5 371 8 HOH HOH . D 3 HOH A 6 372 9 HOH HOH . D 3 HOH A 7 373 10 HOH HOH . D 3 HOH A 8 374 11 HOH HOH . D 3 HOH A 9 375 14 HOH HOH . D 3 HOH A 10 376 16 HOH HOH . D 3 HOH A 11 377 17 HOH HOH . D 3 HOH A 12 378 18 HOH HOH . D 3 HOH A 13 379 19 HOH HOH . D 3 HOH A 14 380 21 HOH HOH . D 3 HOH A 15 381 22 HOH HOH . D 3 HOH A 16 382 23 HOH HOH . D 3 HOH A 17 383 26 HOH HOH . D 3 HOH A 18 384 27 HOH HOH . D 3 HOH A 19 385 29 HOH HOH . D 3 HOH A 20 386 30 HOH HOH . D 3 HOH A 21 387 32 HOH HOH . D 3 HOH A 22 388 33 HOH HOH . D 3 HOH A 23 389 34 HOH HOH . D 3 HOH A 24 390 36 HOH HOH . D 3 HOH A 25 391 38 HOH HOH . D 3 HOH A 26 392 39 HOH HOH . D 3 HOH A 27 393 43 HOH HOH . D 3 HOH A 28 394 44 HOH HOH . D 3 HOH A 29 395 45 HOH HOH . D 3 HOH A 30 396 46 HOH HOH . D 3 HOH A 31 397 48 HOH HOH . D 3 HOH A 32 398 50 HOH HOH . D 3 HOH A 33 399 52 HOH HOH . D 3 HOH A 34 400 53 HOH HOH . D 3 HOH A 35 401 56 HOH HOH . D 3 HOH A 36 402 57 HOH HOH . D 3 HOH A 37 403 58 HOH HOH . D 3 HOH A 38 404 62 HOH HOH . D 3 HOH A 39 405 63 HOH HOH . D 3 HOH A 40 406 64 HOH HOH . D 3 HOH A 41 407 65 HOH HOH . D 3 HOH A 42 408 66 HOH HOH . D 3 HOH A 43 409 67 HOH HOH . D 3 HOH A 44 410 70 HOH HOH . D 3 HOH A 45 411 74 HOH HOH . D 3 HOH A 46 412 75 HOH HOH . D 3 HOH A 47 413 77 HOH HOH . D 3 HOH A 48 414 78 HOH HOH . D 3 HOH A 49 415 79 HOH HOH . D 3 HOH A 50 416 81 HOH HOH . D 3 HOH A 51 417 82 HOH HOH . D 3 HOH A 52 418 83 HOH HOH . D 3 HOH A 53 419 85 HOH HOH . D 3 HOH A 54 420 86 HOH HOH . D 3 HOH A 55 421 88 HOH HOH . D 3 HOH A 56 422 91 HOH HOH . D 3 HOH A 57 423 94 HOH HOH . D 3 HOH A 58 424 95 HOH HOH . D 3 HOH A 59 425 96 HOH HOH . D 3 HOH A 60 426 97 HOH HOH . D 3 HOH A 61 427 98 HOH HOH . D 3 HOH A 62 428 103 HOH HOH . D 3 HOH A 63 429 106 HOH HOH . D 3 HOH A 64 430 108 HOH HOH . D 3 HOH A 65 431 110 HOH HOH . D 3 HOH A 66 432 111 HOH HOH . D 3 HOH A 67 433 113 HOH HOH . D 3 HOH A 68 434 116 HOH HOH . D 3 HOH A 69 435 117 HOH HOH . D 3 HOH A 70 436 118 HOH HOH . D 3 HOH A 71 437 120 HOH HOH . D 3 HOH A 72 438 122 HOH HOH . D 3 HOH A 73 439 126 HOH HOH . D 3 HOH A 74 440 130 HOH HOH . D 3 HOH A 75 441 131 HOH HOH . D 3 HOH A 76 442 132 HOH HOH . D 3 HOH A 77 443 134 HOH HOH . D 3 HOH A 78 444 139 HOH HOH . D 3 HOH A 79 445 141 HOH HOH . D 3 HOH A 80 446 145 HOH HOH . D 3 HOH A 81 447 146 HOH HOH . E 3 HOH B 1 366 4 HOH HOH . E 3 HOH B 2 367 5 HOH HOH . E 3 HOH B 3 368 7 HOH HOH . E 3 HOH B 4 369 12 HOH HOH . E 3 HOH B 5 370 13 HOH HOH . E 3 HOH B 6 371 15 HOH HOH . E 3 HOH B 7 372 20 HOH HOH . E 3 HOH B 8 373 24 HOH HOH . E 3 HOH B 9 374 25 HOH HOH . E 3 HOH B 10 375 28 HOH HOH . E 3 HOH B 11 376 31 HOH HOH . E 3 HOH B 12 377 35 HOH HOH . E 3 HOH B 13 378 37 HOH HOH . E 3 HOH B 14 379 40 HOH HOH . E 3 HOH B 15 380 41 HOH HOH . E 3 HOH B 16 381 47 HOH HOH . E 3 HOH B 17 382 49 HOH HOH . E 3 HOH B 18 383 51 HOH HOH . E 3 HOH B 19 384 55 HOH HOH . E 3 HOH B 20 385 59 HOH HOH . E 3 HOH B 21 386 60 HOH HOH . E 3 HOH B 22 387 61 HOH HOH . E 3 HOH B 23 388 68 HOH HOH . E 3 HOH B 24 389 69 HOH HOH . E 3 HOH B 25 390 71 HOH HOH . E 3 HOH B 26 391 72 HOH HOH . E 3 HOH B 27 392 73 HOH HOH . E 3 HOH B 28 393 76 HOH HOH . E 3 HOH B 29 394 84 HOH HOH . E 3 HOH B 30 395 89 HOH HOH . E 3 HOH B 31 396 90 HOH HOH . E 3 HOH B 32 397 92 HOH HOH . E 3 HOH B 33 398 93 HOH HOH . E 3 HOH B 34 399 99 HOH HOH . E 3 HOH B 35 400 101 HOH HOH . E 3 HOH B 36 401 102 HOH HOH . E 3 HOH B 37 402 104 HOH HOH . E 3 HOH B 38 403 105 HOH HOH . E 3 HOH B 39 404 107 HOH HOH . E 3 HOH B 40 405 109 HOH HOH . E 3 HOH B 41 406 112 HOH HOH . E 3 HOH B 42 407 114 HOH HOH . E 3 HOH B 43 408 115 HOH HOH . E 3 HOH B 44 409 119 HOH HOH . E 3 HOH B 45 410 121 HOH HOH . E 3 HOH B 46 411 123 HOH HOH . E 3 HOH B 47 412 124 HOH HOH . E 3 HOH B 48 413 125 HOH HOH . E 3 HOH B 49 414 127 HOH HOH . E 3 HOH B 50 415 128 HOH HOH . E 3 HOH B 51 416 129 HOH HOH . E 3 HOH B 52 417 133 HOH HOH . E 3 HOH B 53 418 135 HOH HOH . E 3 HOH B 54 419 137 HOH HOH . E 3 HOH B 55 420 138 HOH HOH . E 3 HOH B 56 421 140 HOH HOH . E 3 HOH B 57 422 142 HOH HOH . E 3 HOH B 58 423 144 HOH HOH . E 3 HOH B 59 424 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 10.082 -8.742 22.624 1 84.31 ? PA NAP 366 A 1 HETATM 2 O O1A NAP . . . C 2 9.278 -8.71 21.379 1 84.37 ? O1A NAP 366 A 1 HETATM 3 O O2A NAP . . . C 2 9.38 -9.497 23.691 1 84.28 ? O2A NAP 366 A 1 HETATM 4 O O5B NAP . . . C 2 11.525 -9.389 22.335 1 79.75 ? O5B NAP 366 A 1 HETATM 5 C C5B NAP . . . C 2 12.414 -8.787 21.424 1 73.29 ? C5B NAP 366 A 1 HETATM 6 C C4B NAP . . . C 2 12.806 -9.823 20.385 1 68.81 ? C4B NAP 366 A 1 HETATM 7 O O4B NAP . . . C 2 13.087 -11.055 21.029 1 67.06 ? O4B NAP 366 A 1 HETATM 8 C C3B NAP . . . C 2 11.678 -10.073 19.394 1 66.98 ? C3B NAP 366 A 1 HETATM 9 O O3B NAP . . . C 2 12.169 -9.998 18.078 1 65.57 ? O3B NAP 366 A 1 HETATM 10 C C2B NAP . . . C 2 11.21 -11.478 19.714 1 65.56 ? C2B NAP 366 A 1 HETATM 11 O O2B NAP . . . C 2 10.791 -12.19 18.576 1 64.92 ? O2B NAP 366 A 1 HETATM 12 C C1B NAP . . . C 2 12.43 -12.114 20.36 1 64.86 ? C1B NAP 366 A 1 HETATM 13 N N9A NAP . . . C 2 12.032 -13.207 21.269 1 64.04 ? N9A NAP 366 A 1 HETATM 14 C C8A NAP . . . C 2 11.123 -13.155 22.295 1 63.73 ? C8A NAP 366 A 1 HETATM 15 N N7A NAP . . . C 2 11.05 -14.377 22.866 1 63.53 ? N7A NAP 366 A 1 HETATM 16 C C5A NAP . . . C 2 11.896 -15.21 22.219 1 63.74 ? C5A NAP 366 A 1 HETATM 17 C C6A NAP . . . C 2 12.212 -16.558 22.385 1 64.1 ? C6A NAP 366 A 1 HETATM 18 N N6A NAP . . . C 2 11.629 -17.274 23.341 1 63.92 ? N6A NAP 366 A 1 HETATM 19 N N1A NAP . . . C 2 13.142 -17.154 21.548 1 64.23 ? N1A NAP 366 A 1 HETATM 20 C C2A NAP . . . C 2 13.757 -16.414 20.552 1 63.94 ? C2A NAP 366 A 1 HETATM 21 N N3A NAP . . . C 2 13.431 -15.08 20.393 1 63.36 ? N3A NAP 366 A 1 HETATM 22 C C4A NAP . . . C 2 12.52 -14.487 21.209 1 63.59 ? C4A NAP 366 A 1 HETATM 23 O O3 NAP . . . C 2 10.429 -7.246 23.112 1 87.74 ? O3 NAP 366 A 1 HETATM 24 P PN NAP . . . C 2 10.245 -5.809 22.403 1 91.83 ? PN NAP 366 A 1 HETATM 25 O O1N NAP . . . C 2 10.359 -4.775 23.46 1 91.9 ? O1N NAP 366 A 1 HETATM 26 O O2N NAP . . . C 2 11.125 -5.726 21.214 1 91.58 ? O2N NAP 366 A 1 HETATM 27 O O5D NAP . . . C 2 8.713 -5.849 21.903 1 93.43 ? O5D NAP 366 A 1 HETATM 28 C C5D NAP . . . C 2 8.08 -4.675 21.438 1 96.33 ? C5D NAP 366 A 1 HETATM 29 C C4D NAP . . . C 2 7.106 -4.074 22.459 1 98.25 ? C4D NAP 366 A 1 HETATM 30 O O4D NAP . . . C 2 5.838 -3.902 21.839 1 99.1 ? O4D NAP 366 A 1 HETATM 31 C C3D NAP . . . C 2 6.885 -4.914 23.717 1 98.95 ? C3D NAP 366 A 1 HETATM 32 O O3D NAP . . . C 2 7.591 -4.395 24.824 1 98.88 ? O3D NAP 366 A 1 HETATM 33 C C2D NAP . . . C 2 5.383 -4.891 23.945 1 99.63 ? C2D NAP 366 A 1 HETATM 34 O O2D NAP . . . C 2 5.034 -3.932 24.922 1 99.48 ? O2D NAP 366 A 1 HETATM 35 C C1D NAP . . . C 2 4.789 -4.482 22.601 1 100.14 ? C1D NAP 366 A 1 HETATM 36 N N1N NAP . . . C 2 4.184 -5.644 21.896 1 100.71 ? N1N NAP 366 A 1 HETATM 37 C C2N NAP . . . C 2 2.815 -5.724 21.821 1 101.21 ? C2N NAP 366 A 1 HETATM 38 C C3N NAP . . . C 2 2.193 -6.792 21.166 1 101.59 ? C3N NAP 366 A 1 HETATM 39 C C7N NAP . . . C 2 0.73 -6.702 20.816 1 101.81 ? C7N NAP 366 A 1 HETATM 40 O O7N NAP . . . C 2 0.008 -7.882 20.525 1 101.71 ? O7N NAP 366 A 1 HETATM 41 N N7N NAP . . . C 2 0.142 -5.503 20.787 1 102.01 ? N7N NAP 366 A 1 HETATM 42 C C4N NAP . . . C 2 2.981 -7.791 20.587 1 101.16 ? C4N NAP 366 A 1 HETATM 43 C C5N NAP . . . C 2 4.372 -7.71 20.663 1 101.12 ? C5N NAP 366 A 1 HETATM 44 C C6N NAP . . . C 2 4.959 -6.629 21.32 1 100.93 ? C6N NAP 366 A 1 HETATM 45 P P2B NAP . . . C 2 9.232 -12.547 18.364 1 64.02 ? P2B NAP 366 A 1 HETATM 46 O O1X NAP . . . C 2 9.162 -13.836 17.589 1 63.58 ? O1X NAP 366 A 1 HETATM 47 O O2X NAP . . . C 2 8.563 -11.436 17.593 1 64.29 ? O2X NAP 366 A 1 HETATM 48 O O3X NAP . . . C 2 8.529 -12.708 19.691 1 63.96 ? O3X NAP 366 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #