data_3HTH # _model_server_result.job_id d9fXIXUhPAbu-dysWYQL_g _model_server_result.datetime_utc '2024-11-23 10:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":200}' # _entry.id 3HTH # _exptl.entry_id 3HTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HTH _cell.length_a 99.719 _cell.length_b 99.719 _cell.length_c 133.73 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,I,J 1 1 C,H,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 89.153333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 74 1_555 E NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc2 A OE1 GLU 114 A GLU 94 1_555 E NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A OE2 GLU 114 A GLU 94 1_555 E NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc4 C NE2 HIS 94 C HIS 74 1_555 H NI NI . C NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc5 C OE1 GLU 114 C GLU 94 1_555 H NI NI . C NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc6 C OE2 GLU 114 C GLU 94 1_555 H NI NI . C NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HTH _atom_sites.fract_transf_matrix[1][1] 0.010028 _atom_sites.fract_transf_matrix[1][2] 0.00579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NI A 1 199 199 NI NI . E 2 NI A 1 200 200 NI NI . F 3 PRL A 1 201 201 PRL PRL . G 3 PRL B 1 201 201 PRL PRL . H 2 NI C 1 200 200 NI NI . I 4 HOH A 1 301 2 HOH HOH . I 4 HOH A 2 302 3 HOH HOH . I 4 HOH A 3 303 4 HOH HOH . I 4 HOH A 4 304 5 HOH HOH . I 4 HOH A 5 305 6 HOH HOH . I 4 HOH A 6 306 17 HOH HOH . I 4 HOH A 7 307 18 HOH HOH . I 4 HOH A 8 308 25 HOH HOH . I 4 HOH A 9 309 26 HOH HOH . I 4 HOH A 10 310 27 HOH HOH . I 4 HOH A 11 311 32 HOH HOH . I 4 HOH A 12 312 33 HOH HOH . I 4 HOH A 13 313 43 HOH HOH . I 4 HOH A 14 314 44 HOH HOH . I 4 HOH A 15 315 45 HOH HOH . I 4 HOH A 16 316 48 HOH HOH . I 4 HOH A 17 317 49 HOH HOH . I 4 HOH A 18 318 50 HOH HOH . I 4 HOH A 19 319 52 HOH HOH . I 4 HOH A 20 320 54 HOH HOH . I 4 HOH A 21 321 58 HOH HOH . I 4 HOH A 22 322 59 HOH HOH . I 4 HOH A 23 323 63 HOH HOH . I 4 HOH A 24 324 66 HOH HOH . I 4 HOH A 25 325 67 HOH HOH . I 4 HOH A 26 326 73 HOH HOH . I 4 HOH A 27 327 79 HOH HOH . J 4 HOH B 1 301 1 HOH HOH . J 4 HOH B 2 302 7 HOH HOH . J 4 HOH B 3 303 8 HOH HOH . J 4 HOH B 4 304 9 HOH HOH . J 4 HOH B 5 305 10 HOH HOH . J 4 HOH B 6 306 24 HOH HOH . J 4 HOH B 7 307 28 HOH HOH . J 4 HOH B 8 308 29 HOH HOH . J 4 HOH B 9 309 30 HOH HOH . J 4 HOH B 10 310 31 HOH HOH . J 4 HOH B 11 311 34 HOH HOH . J 4 HOH B 12 312 35 HOH HOH . J 4 HOH B 13 313 41 HOH HOH . J 4 HOH B 14 314 42 HOH HOH . J 4 HOH B 15 315 46 HOH HOH . J 4 HOH B 16 316 47 HOH HOH . J 4 HOH B 17 317 51 HOH HOH . J 4 HOH B 18 318 53 HOH HOH . J 4 HOH B 19 319 55 HOH HOH . J 4 HOH B 20 320 56 HOH HOH . J 4 HOH B 21 321 60 HOH HOH . J 4 HOH B 22 322 61 HOH HOH . J 4 HOH B 23 323 62 HOH HOH . J 4 HOH B 24 324 68 HOH HOH . J 4 HOH B 25 325 69 HOH HOH . J 4 HOH B 26 326 70 HOH HOH . J 4 HOH B 27 327 80 HOH HOH . K 4 HOH C 1 301 11 HOH HOH . K 4 HOH C 2 302 12 HOH HOH . K 4 HOH C 3 303 13 HOH HOH . K 4 HOH C 4 304 14 HOH HOH . K 4 HOH C 5 305 15 HOH HOH . K 4 HOH C 6 306 16 HOH HOH . K 4 HOH C 7 307 19 HOH HOH . K 4 HOH C 8 308 20 HOH HOH . K 4 HOH C 9 309 21 HOH HOH . K 4 HOH C 10 310 22 HOH HOH . K 4 HOH C 11 311 23 HOH HOH . K 4 HOH C 12 312 36 HOH HOH . K 4 HOH C 13 313 37 HOH HOH . K 4 HOH C 14 314 38 HOH HOH . K 4 HOH C 15 315 39 HOH HOH . K 4 HOH C 16 316 40 HOH HOH . K 4 HOH C 17 317 57 HOH HOH . K 4 HOH C 18 318 64 HOH HOH . K 4 HOH C 19 319 65 HOH HOH . K 4 HOH C 20 320 71 HOH HOH . K 4 HOH C 21 321 72 HOH HOH . K 4 HOH C 22 322 74 HOH HOH . K 4 HOH C 23 323 75 HOH HOH . K 4 HOH C 24 324 76 HOH HOH . K 4 HOH C 25 325 77 HOH HOH . K 4 HOH C 26 326 78 HOH HOH . K 4 HOH C 27 327 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 0.598 _atom_site.Cartn_y -0.007 _atom_site.Cartn_z 22.292 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 63.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 200 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #