data_3HUB
#
_model_server_result.job_id            QgyB_lrBiKYY5ojISajnwA 
_model_server_result.datetime_utc      '2024-11-26 08:22:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hub 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1000}' 
#
_entry.id    3HUB 
#
_exptl.entry_id    3HUB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HUB 
_cell.length_a            68.01 
_cell.length_b            69.61 
_cell.length_c            74.44 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HUB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 139 n n 
C1 C2 BOG sing 140 n n 
C1 O5 BOG sing 141 n n 
C1 H1 BOG sing 142 n n 
O1 C1' BOG sing 143 n n 
C2 O2 BOG sing 144 n n 
C2 C3 BOG sing 145 n n 
C2 H2 BOG sing 146 n n 
O2 HO2 BOG sing 147 n n 
C3 O3 BOG sing 148 n n 
C3 C4 BOG sing 149 n n 
C3 H3 BOG sing 150 n n 
O3 HO3 BOG sing 151 n n 
C4 O4 BOG sing 152 n n 
C4 C5 BOG sing 153 n n 
C4 H4 BOG sing 154 n n 
O4 HO4 BOG sing 155 n n 
C5 O5 BOG sing 156 n n 
C5 C6 BOG sing 157 n n 
C5 H5 BOG sing 158 n n 
C6 O6 BOG sing 159 n n 
C6 H61 BOG sing 160 n n 
C6 H62 BOG sing 161 n n 
O6 HO6 BOG sing 162 n n 
C1' C2' BOG sing 163 n n 
C1' "H1'1" BOG sing 164 n n 
C1' "H1'2" BOG sing 165 n n 
C2' C3' BOG sing 166 n n 
C2' "H2'1" BOG sing 167 n n 
C2' "H2'2" BOG sing 168 n n 
C3' C4' BOG sing 169 n n 
C3' "H3'1" BOG sing 170 n n 
C3' "H3'2" BOG sing 171 n n 
C4' C5' BOG sing 172 n n 
C4' "H4'1" BOG sing 173 n n 
C4' "H4'2" BOG sing 174 n n 
C5' C6' BOG sing 175 n n 
C5' "H5'1" BOG sing 176 n n 
C5' "H5'2" BOG sing 177 n n 
C6' C7' BOG sing 178 n n 
C6' "H6'1" BOG sing 179 n n 
C6' "H6'2" BOG sing 180 n n 
C7' C8' BOG sing 181 n n 
C7' "H7'1" BOG sing 182 n n 
C7' "H7'2" BOG sing 183 n n 
C8' "H8'1" BOG sing 184 n n 
C8' "H8'2" BOG sing 185 n n 
C8' "H8'3" BOG sing 186 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3HUB 
_atom_sites.fract_transf_matrix[1][1]    0.014704 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014366 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013434 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 1000 1000 BOG BOG . 
C 3 469 A 1 361 1 469 469 . 
D 4 HOH A 1 362 1 HOH HOH . 
D 4 HOH A 2 363 2 HOH HOH . 
D 4 HOH A 3 364 3 HOH HOH . 
D 4 HOH A 4 365 4 HOH HOH . 
D 4 HOH A 5 366 5 HOH HOH . 
D 4 HOH A 6 367 6 HOH HOH . 
D 4 HOH A 7 368 7 HOH HOH . 
D 4 HOH A 8 369 8 HOH HOH . 
D 4 HOH A 9 370 9 HOH HOH . 
D 4 HOH A 10 371 10 HOH HOH . 
D 4 HOH A 11 372 12 HOH HOH . 
D 4 HOH A 12 373 13 HOH HOH . 
D 4 HOH A 13 374 14 HOH HOH . 
D 4 HOH A 14 375 15 HOH HOH . 
D 4 HOH A 15 376 16 HOH HOH . 
D 4 HOH A 16 377 17 HOH HOH . 
D 4 HOH A 17 378 18 HOH HOH . 
D 4 HOH A 18 379 19 HOH HOH . 
D 4 HOH A 19 380 22 HOH HOH . 
D 4 HOH A 20 381 23 HOH HOH . 
D 4 HOH A 21 382 24 HOH HOH . 
D 4 HOH A 22 383 25 HOH HOH . 
D 4 HOH A 23 384 26 HOH HOH . 
D 4 HOH A 24 385 27 HOH HOH . 
D 4 HOH A 25 386 28 HOH HOH . 
D 4 HOH A 26 387 29 HOH HOH . 
D 4 HOH A 27 388 30 HOH HOH . 
D 4 HOH A 28 389 31 HOH HOH . 
D 4 HOH A 29 390 32 HOH HOH . 
D 4 HOH A 30 391 33 HOH HOH . 
D 4 HOH A 31 392 34 HOH HOH . 
D 4 HOH A 32 393 35 HOH HOH . 
D 4 HOH A 33 394 36 HOH HOH . 
D 4 HOH A 34 395 37 HOH HOH . 
D 4 HOH A 35 396 38 HOH HOH . 
D 4 HOH A 36 397 39 HOH HOH . 
D 4 HOH A 37 398 40 HOH HOH . 
D 4 HOH A 38 399 41 HOH HOH . 
D 4 HOH A 39 400 42 HOH HOH . 
D 4 HOH A 40 401 43 HOH HOH . 
D 4 HOH A 41 402 44 HOH HOH . 
D 4 HOH A 42 403 45 HOH HOH . 
D 4 HOH A 43 404 46 HOH HOH . 
D 4 HOH A 44 405 47 HOH HOH . 
D 4 HOH A 45 406 48 HOH HOH . 
D 4 HOH A 46 407 50 HOH HOH . 
D 4 HOH A 47 408 51 HOH HOH . 
D 4 HOH A 48 409 52 HOH HOH . 
D 4 HOH A 49 410 53 HOH HOH . 
D 4 HOH A 50 411 54 HOH HOH . 
D 4 HOH A 51 412 55 HOH HOH . 
D 4 HOH A 52 413 56 HOH HOH . 
D 4 HOH A 53 414 57 HOH HOH . 
D 4 HOH A 54 415 58 HOH HOH . 
D 4 HOH A 55 416 59 HOH HOH . 
D 4 HOH A 56 417 60 HOH HOH . 
D 4 HOH A 57 418 61 HOH HOH . 
D 4 HOH A 58 419 62 HOH HOH . 
D 4 HOH A 59 420 63 HOH HOH . 
D 4 HOH A 60 421 64 HOH HOH . 
D 4 HOH A 61 422 65 HOH HOH . 
D 4 HOH A 62 423 66 HOH HOH . 
D 4 HOH A 63 424 67 HOH HOH . 
D 4 HOH A 64 425 68 HOH HOH . 
D 4 HOH A 65 426 69 HOH HOH . 
D 4 HOH A 66 427 70 HOH HOH . 
D 4 HOH A 67 428 71 HOH HOH . 
D 4 HOH A 68 429 72 HOH HOH . 
D 4 HOH A 69 430 73 HOH HOH . 
D 4 HOH A 70 431 74 HOH HOH . 
D 4 HOH A 71 432 75 HOH HOH . 
D 4 HOH A 72 433 76 HOH HOH . 
D 4 HOH A 73 434 77 HOH HOH . 
D 4 HOH A 74 435 78 HOH HOH . 
D 4 HOH A 75 436 79 HOH HOH . 
D 4 HOH A 76 437 80 HOH HOH . 
D 4 HOH A 77 438 81 HOH HOH . 
D 4 HOH A 78 439 82 HOH HOH . 
D 4 HOH A 79 440 84 HOH HOH . 
D 4 HOH A 80 441 85 HOH HOH . 
D 4 HOH A 81 442 86 HOH HOH . 
D 4 HOH A 82 443 87 HOH HOH . 
D 4 HOH A 83 444 88 HOH HOH . 
D 4 HOH A 84 445 89 HOH HOH . 
D 4 HOH A 85 446 90 HOH HOH . 
D 4 HOH A 86 447 91 HOH HOH . 
D 4 HOH A 87 448 92 HOH HOH . 
D 4 HOH A 88 449 93 HOH HOH . 
D 4 HOH A 89 450 94 HOH HOH . 
D 4 HOH A 90 451 95 HOH HOH . 
D 4 HOH A 91 452 96 HOH HOH . 
D 4 HOH A 92 453 97 HOH HOH . 
D 4 HOH A 93 454 98 HOH HOH . 
D 4 HOH A 94 455 99 HOH HOH . 
D 4 HOH A 95 456 100 HOH HOH . 
D 4 HOH A 96 457 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . B 2 -5.513 -10.174 -6.735 1 36.59 ? C1 BOG 1000 A 1 
HETATM 2 O O1 BOG . . . B 2 -5.998 -9.168 -7.686 1 32.41 ? O1 BOG 1000 A 1 
HETATM 3 C C2 BOG . . . B 2 -6.116 -11.568 -6.915 1 37.5 ? C2 BOG 1000 A 1 
HETATM 4 O O2 BOG . . . B 2 -7.513 -11.464 -6.696 1 33.77 ? O2 BOG 1000 A 1 
HETATM 5 C C3 BOG . . . B 2 -5.531 -12.608 -5.92 1 40.85 ? C3 BOG 1000 A 1 
HETATM 6 O O3 BOG . . . B 2 -5.944 -13.956 -6.281 1 38.68 ? O3 BOG 1000 A 1 
HETATM 7 C C4 BOG . . . B 2 -3.987 -12.545 -5.759 1 43.51 ? C4 BOG 1000 A 1 
HETATM 8 O O4 BOG . . . B 2 -3.611 -12.985 -4.444 1 46.61 ? O4 BOG 1000 A 1 
HETATM 9 C C5 BOG . . . B 2 -3.452 -11.103 -5.942 1 43.35 ? C5 BOG 1000 A 1 
HETATM 10 O O5 BOG . . . B 2 -4.145 -10.34 -6.964 1 40.74 ? O5 BOG 1000 A 1 
HETATM 11 C C6 BOG . . . B 2 -2.018 -11.129 -6.435 1 42.52 ? C6 BOG 1000 A 1 
HETATM 12 O O6 BOG . . . B 2 -1.362 -9.985 -5.877 1 41.13 ? O6 BOG 1000 A 1 
HETATM 13 C C1' BOG . . . B 2 -5.438 -7.88 -7.435 1 31.57 ? C1' BOG 1000 A 1 
HETATM 14 C C2' BOG . . . B 2 -6.396 -7.136 -6.535 1 31.54 ? C2' BOG 1000 A 1 
HETATM 15 C C3' BOG . . . B 2 -5.916 -5.745 -6.174 1 27.1 ? C3' BOG 1000 A 1 
HETATM 16 C C4' BOG . . . B 2 -7.153 -5.077 -5.543 1 27.85 ? C4' BOG 1000 A 1 
HETATM 17 C C5' BOG . . . B 2 -6.885 -3.68 -5.002 1 27.17 ? C5' BOG 1000 A 1 
HETATM 18 C C6' BOG . . . B 2 -8.244 -2.964 -4.824 1 28.65 ? C6' BOG 1000 A 1 
HETATM 19 C C7' BOG . . . B 2 -8.286 -2.262 -3.481 1 29.56 ? C7' BOG 1000 A 1 
HETATM 20 C C8' BOG . . . B 2 -8.365 -0.756 -3.695 1 33.39 ? C8' BOG 1000 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#