data_3HUB # _model_server_result.job_id tvJCf9mkQtUOsiKwQYzixw _model_server_result.datetime_utc '2024-11-26 08:49:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":361}' # _entry.id 3HUB # _exptl.entry_id 3HUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.004 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(6-chloro-5-{[(2R,5S)-4-(4-fluorobenzyl)-2,5-dimethylpiperazin-1-yl]carbonyl}-1-methyl-1H-indol-3-yl)-N,N-dimethyl-2-oxoacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HUB _cell.length_a 68.01 _cell.length_b 69.61 _cell.length_c 74.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H30 Cl F N4 O3' _chem_comp.formula_weight 513.004 _chem_comp.id 469 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(6-chloro-5-{[(2R,5S)-4-(4-fluorobenzyl)-2,5-dimethylpiperazin-1-yl]carbonyl}-1-methyl-1H-indol-3-yl)-N,N-dimethyl-2-oxoacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC NBG 469 sing 1 n n CAC HAC 469 sing 2 n n CAC HACA 469 sing 3 n n CAC HACB 469 sing 4 n n CAD NBG 469 sing 5 n n NBG CAV 469 sing 6 n n CAD HAD 469 sing 7 n n CAD HADA 469 sing 8 n n CAD HADB 469 sing 9 n n CAV CAU 469 sing 10 n n CAV OAG 469 doub 11 n n OAF CAU 469 doub 12 n n CAU CBB 469 sing 13 n n CBB CBC 469 sing 14 n y CBB CAQ 469 doub 15 n y CAP CBC 469 sing 16 n y CBC CBD 469 doub 17 n y CAP CBA 469 doub 18 n y CAP HAP 469 sing 19 n n CAQ NBJ 469 sing 20 n y CAQ HAQ 469 sing 21 n n CBD NBJ 469 sing 22 n y NBJ CAE 469 sing 23 n n CAE HAE 469 sing 24 n n CAE HAEA 469 sing 25 n n CAE HAEB 469 sing 26 n n CBD CAO 469 sing 27 n y CAY CAO 469 doub 28 n y CAO HAO 469 sing 29 n n CBA CAY 469 sing 30 n y CAY CLA 469 sing 31 n n CAW CBA 469 sing 32 n n OAH CAW 469 doub 33 n n CAW NBI 469 sing 34 n n CBF NBI 469 sing 35 n n NBI CAT 469 sing 36 n n CBF CAB 469 sing 37 n n CBF CAS 469 sing 38 n n CBF HBF 469 sing 39 n n CAS NBH 469 sing 40 n n CAS HAS 469 sing 41 n n CAS HASA 469 sing 42 n n CAB HAB 469 sing 43 n n CAB HABA 469 sing 44 n n CAB HABB 469 sing 45 n n CAT CBE 469 sing 46 n n CAT HAT 469 sing 47 n n CAT HATA 469 sing 48 n n CAA CBE 469 sing 49 n n NBH CBE 469 sing 50 n n CBE HBE 469 sing 51 n n CAA HAA 469 sing 52 n n CAA HAAA 469 sing 53 n n CAA HAAB 469 sing 54 n n NBH CAR 469 sing 55 n n CAZ CAR 469 sing 56 n n CAR HAR 469 sing 57 n n CAR HARA 469 sing 58 n n CAM CAZ 469 doub 59 n y CAZ CAN 469 sing 60 n y CAK CAM 469 sing 61 n y CAM HAM 469 sing 62 n n CAK CAX 469 doub 63 n y CAK HAK 469 sing 64 n n FAI CAX 469 sing 65 n n CAX CAL 469 sing 66 n y CAL CAN 469 doub 67 n y CAL HAL 469 sing 68 n n CAN HAN 469 sing 69 n n # _atom_sites.entry_id 3HUB _atom_sites.fract_transf_matrix[1][1] 0.014704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 1000 1000 BOG BOG . C 3 469 A 1 361 1 469 469 . D 4 HOH A 1 362 1 HOH HOH . D 4 HOH A 2 363 2 HOH HOH . D 4 HOH A 3 364 3 HOH HOH . D 4 HOH A 4 365 4 HOH HOH . D 4 HOH A 5 366 5 HOH HOH . D 4 HOH A 6 367 6 HOH HOH . D 4 HOH A 7 368 7 HOH HOH . D 4 HOH A 8 369 8 HOH HOH . D 4 HOH A 9 370 9 HOH HOH . D 4 HOH A 10 371 10 HOH HOH . D 4 HOH A 11 372 12 HOH HOH . D 4 HOH A 12 373 13 HOH HOH . D 4 HOH A 13 374 14 HOH HOH . D 4 HOH A 14 375 15 HOH HOH . D 4 HOH A 15 376 16 HOH HOH . D 4 HOH A 16 377 17 HOH HOH . D 4 HOH A 17 378 18 HOH HOH . D 4 HOH A 18 379 19 HOH HOH . D 4 HOH A 19 380 22 HOH HOH . D 4 HOH A 20 381 23 HOH HOH . D 4 HOH A 21 382 24 HOH HOH . D 4 HOH A 22 383 25 HOH HOH . D 4 HOH A 23 384 26 HOH HOH . D 4 HOH A 24 385 27 HOH HOH . D 4 HOH A 25 386 28 HOH HOH . D 4 HOH A 26 387 29 HOH HOH . D 4 HOH A 27 388 30 HOH HOH . D 4 HOH A 28 389 31 HOH HOH . D 4 HOH A 29 390 32 HOH HOH . D 4 HOH A 30 391 33 HOH HOH . D 4 HOH A 31 392 34 HOH HOH . D 4 HOH A 32 393 35 HOH HOH . D 4 HOH A 33 394 36 HOH HOH . D 4 HOH A 34 395 37 HOH HOH . D 4 HOH A 35 396 38 HOH HOH . D 4 HOH A 36 397 39 HOH HOH . D 4 HOH A 37 398 40 HOH HOH . D 4 HOH A 38 399 41 HOH HOH . D 4 HOH A 39 400 42 HOH HOH . D 4 HOH A 40 401 43 HOH HOH . D 4 HOH A 41 402 44 HOH HOH . D 4 HOH A 42 403 45 HOH HOH . D 4 HOH A 43 404 46 HOH HOH . D 4 HOH A 44 405 47 HOH HOH . D 4 HOH A 45 406 48 HOH HOH . D 4 HOH A 46 407 50 HOH HOH . D 4 HOH A 47 408 51 HOH HOH . D 4 HOH A 48 409 52 HOH HOH . D 4 HOH A 49 410 53 HOH HOH . D 4 HOH A 50 411 54 HOH HOH . D 4 HOH A 51 412 55 HOH HOH . D 4 HOH A 52 413 56 HOH HOH . D 4 HOH A 53 414 57 HOH HOH . D 4 HOH A 54 415 58 HOH HOH . D 4 HOH A 55 416 59 HOH HOH . D 4 HOH A 56 417 60 HOH HOH . D 4 HOH A 57 418 61 HOH HOH . D 4 HOH A 58 419 62 HOH HOH . D 4 HOH A 59 420 63 HOH HOH . D 4 HOH A 60 421 64 HOH HOH . D 4 HOH A 61 422 65 HOH HOH . D 4 HOH A 62 423 66 HOH HOH . D 4 HOH A 63 424 67 HOH HOH . D 4 HOH A 64 425 68 HOH HOH . D 4 HOH A 65 426 69 HOH HOH . D 4 HOH A 66 427 70 HOH HOH . D 4 HOH A 67 428 71 HOH HOH . D 4 HOH A 68 429 72 HOH HOH . D 4 HOH A 69 430 73 HOH HOH . D 4 HOH A 70 431 74 HOH HOH . D 4 HOH A 71 432 75 HOH HOH . D 4 HOH A 72 433 76 HOH HOH . D 4 HOH A 73 434 77 HOH HOH . D 4 HOH A 74 435 78 HOH HOH . D 4 HOH A 75 436 79 HOH HOH . D 4 HOH A 76 437 80 HOH HOH . D 4 HOH A 77 438 81 HOH HOH . D 4 HOH A 78 439 82 HOH HOH . D 4 HOH A 79 440 84 HOH HOH . D 4 HOH A 80 441 85 HOH HOH . D 4 HOH A 81 442 86 HOH HOH . D 4 HOH A 82 443 87 HOH HOH . D 4 HOH A 83 444 88 HOH HOH . D 4 HOH A 84 445 89 HOH HOH . D 4 HOH A 85 446 90 HOH HOH . D 4 HOH A 86 447 91 HOH HOH . D 4 HOH A 87 448 92 HOH HOH . D 4 HOH A 88 449 93 HOH HOH . D 4 HOH A 89 450 94 HOH HOH . D 4 HOH A 90 451 95 HOH HOH . D 4 HOH A 91 452 96 HOH HOH . D 4 HOH A 92 453 97 HOH HOH . D 4 HOH A 93 454 98 HOH HOH . D 4 HOH A 94 455 99 HOH HOH . D 4 HOH A 95 456 100 HOH HOH . D 4 HOH A 96 457 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC 469 . . . C 3 23.334 7.509 -27.914 1 37.46 ? CAC 469 361 A 1 HETATM 2 N NBG 469 . . . C 3 22.782 8.699 -27.148 1 39.76 ? NBG 469 361 A 1 HETATM 3 C CAD 469 . . . C 3 23.385 10.028 -27.38 1 36.65 ? CAD 469 361 A 1 HETATM 4 C CAV 469 . . . C 3 21.749 8.585 -26.231 1 38.31 ? CAV 469 361 A 1 HETATM 5 O OAG 469 . . . C 3 21.304 9.542 -25.595 1 39.37 ? OAG 469 361 A 1 HETATM 6 C CAU 469 . . . C 3 21.124 7.188 -25.885 1 32.37 ? CAU 469 361 A 1 HETATM 7 O OAF 469 . . . C 3 21.521 6.257 -26.574 1 38.42 ? OAF 469 361 A 1 HETATM 8 C CBB 469 . . . C 3 19.911 6.916 -24.988 1 31.91 ? CBB 469 361 A 1 HETATM 9 C CBC 469 . . . C 3 19.406 5.65 -24.746 1 29.02 ? CBC 469 361 A 1 HETATM 10 C CAP 469 . . . C 3 19.84 4.368 -25.065 1 26.87 ? CAP 469 361 A 1 HETATM 11 C CAQ 469 . . . C 3 19.051 7.834 -24.503 1 30.63 ? CAQ 469 361 A 1 HETATM 12 N NBJ 469 . . . C 3 18.04 7.188 -23.904 1 29.4 ? NBJ 469 361 A 1 HETATM 13 C CAE 469 . . . C 3 16.963 7.846 -23.196 1 28.42 ? CAE 469 361 A 1 HETATM 14 C CBD 469 . . . C 3 18.215 5.856 -24.023 1 30.52 ? CBD 469 361 A 1 HETATM 15 C CAO 469 . . . C 3 17.462 4.754 -23.611 1 29.82 ? CAO 469 361 A 1 HETATM 16 C CAY 469 . . . C 3 17.907 3.474 -23.905 1 29.26 ? CAY 469 361 A 1 HETATM 17 CL CLA 469 . . . C 3 16.903 2.158 -23.379 1 27.05 ? CLA 469 361 A 1 HETATM 18 C CBA 469 . . . C 3 19.093 3.287 -24.636 1 27.85 ? CBA 469 361 A 1 HETATM 19 C CAW 469 . . . C 3 19.633 1.89 -24.952 1 28.64 ? CAW 469 361 A 1 HETATM 20 O OAH 469 . . . C 3 19.82 1.52 -26.097 1 23.33 ? OAH 469 361 A 1 HETATM 21 N NBI 469 . . . C 3 19.981 1.129 -23.883 1 27.23 ? NBI 469 361 A 1 HETATM 22 C CBF 469 . . . C 3 20.504 -0.238 -23.971 1 26.95 ? CBF 469 361 A 1 HETATM 23 C CAS 469 . . . C 3 21.681 -0.288 -23.043 1 27.26 ? CAS 469 361 A 1 HETATM 24 C CAB 469 . . . C 3 19.429 -1.235 -23.452 1 25.26 ? CAB 469 361 A 1 HETATM 25 C CAT 469 . . . C 3 19.719 1.661 -22.487 1 29.71 ? CAT 469 361 A 1 HETATM 26 C CBE 469 . . . C 3 20.887 1.535 -21.55 1 25.01 ? CBE 469 361 A 1 HETATM 27 C CAA 469 . . . C 3 21.93 2.543 -22.067 1 25.74 ? CAA 469 361 A 1 HETATM 28 N NBH 469 . . . C 3 21.256 0.104 -21.676 1 27.17 ? NBH 469 361 A 1 HETATM 29 C CAR 469 . . . C 3 22.279 -0.319 -20.746 1 26.32 ? CAR 469 361 A 1 HETATM 30 C CAZ 469 . . . C 3 22.789 -1.777 -20.874 1 25.21 ? CAZ 469 361 A 1 HETATM 31 C CAM 469 . . . C 3 24.091 -2.03 -21.383 1 21.51 ? CAM 469 361 A 1 HETATM 32 C CAK 469 . . . C 3 24.55 -3.355 -21.439 1 20.84 ? CAK 469 361 A 1 HETATM 33 C CAX 469 . . . C 3 23.728 -4.415 -20.984 1 24.52 ? CAX 469 361 A 1 HETATM 34 F FAI 469 . . . C 3 24.168 -5.704 -21.034 1 24.5 ? FAI 469 361 A 1 HETATM 35 C CAL 469 . . . C 3 22.435 -4.158 -20.498 1 22.91 ? CAL 469 361 A 1 HETATM 36 C CAN 469 . . . C 3 21.967 -2.833 -20.428 1 24.34 ? CAN 469 361 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #