data_3HUD # _model_server_result.job_id 4jLigK6Yz1ZVHNhR1zx_QA _model_server_result.datetime_utc '2024-10-16 10:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":377}' # _entry.id 3HUD # _exptl.entry_id 3HUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.93 _cell.angle_beta 102.5 _cell.angle_gamma 68.82 _cell.entry_id 3HUD _cell.length_a 54.59 _cell.length_b 45.05 _cell.length_c 93.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 B SG CYS 46 B CYS 46 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc9 B NE2 HIS 67 B HIS 67 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc10 B SG CYS 97 B CYS 97 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc11 B SG CYS 100 B CYS 100 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc12 B SG CYS 103 B CYS 103 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 B SG CYS 111 B CYS 111 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc14 B SG CYS 174 B CYS 174 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 3HUD _atom_sites.fract_transf_matrix[1][1] 0.018318 _atom_sites.fract_transf_matrix[1][2] -0.007098 _atom_sites.fract_transf_matrix[1][3] 0.004413 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023806 _atom_sites.fract_transf_matrix[2][3] -0.001166 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 375 375 ZN ZN . D 2 ZN A 1 376 376 ZN ZN . E 3 NAD A 1 377 377 NAD NAD . F 2 ZN B 1 375 375 ZN ZN . G 2 ZN B 1 376 376 ZN ZN . H 3 NAD B 1 377 377 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 -8.493 13.671 -27.341 1 25 ? PA NAD 377 A 1 HETATM 2 O O1A NAD . . . E 3 -9.421 12.678 -26.765 1 25 ? O1A NAD 377 A 1 HETATM 3 O O2A NAD . . . E 3 -8.834 14.931 -26.614 1 25 ? O2A NAD 377 A 1 HETATM 4 O O5B NAD . . . E 3 -8.737 13.848 -28.947 1 25 ? O5B NAD 377 A 1 HETATM 5 C C5B NAD . . . E 3 -9.764 13.127 -29.733 1 25 ? C5B NAD 377 A 1 HETATM 6 C C4B NAD . . . E 3 -10.59 13.995 -30.687 1 25 ? C4B NAD 377 A 1 HETATM 7 O O4B NAD . . . E 3 -11.296 13.142 -31.598 1 25 ? O4B NAD 377 A 1 HETATM 8 C C3B NAD . . . E 3 -11.684 14.799 -29.948 1 25 ? C3B NAD 377 A 1 HETATM 9 O O3B NAD . . . E 3 -11.818 16.092 -30.531 1 25 ? O3B NAD 377 A 1 HETATM 10 C C2B NAD . . . E 3 -12.941 14.017 -30.328 1 25 ? C2B NAD 377 A 1 HETATM 11 O O2B NAD . . . E 3 -14.051 14.907 -30.255 1 25 ? O2B NAD 377 A 1 HETATM 12 C C1B NAD . . . E 3 -12.579 13.715 -31.778 1 25 ? C1B NAD 377 A 1 HETATM 13 N N9A NAD . . . E 3 -13.462 12.747 -32.421 1 25 ? N9A NAD 377 A 1 HETATM 14 C C8A NAD . . . E 3 -14.181 11.78 -31.874 1 25 ? C8A NAD 377 A 1 HETATM 15 N N7A NAD . . . E 3 -14.866 11.059 -32.757 1 25 ? N7A NAD 377 A 1 HETATM 16 C C5A NAD . . . E 3 -14.556 11.601 -33.892 1 25 ? C5A NAD 377 A 1 HETATM 17 C C6A NAD . . . E 3 -14.911 11.17 -35.125 1 25 ? C6A NAD 377 A 1 HETATM 18 N N6A NAD . . . E 3 -15.682 10.095 -35.34 1 25 ? N6A NAD 377 A 1 HETATM 19 N N1A NAD . . . E 3 -14.387 11.819 -36.107 1 25 ? N1A NAD 377 A 1 HETATM 20 C C2A NAD . . . E 3 -13.569 12.82 -35.859 1 25 ? C2A NAD 377 A 1 HETATM 21 N N3A NAD . . . E 3 -13.194 13.258 -34.674 1 25 ? N3A NAD 377 A 1 HETATM 22 C C4A NAD . . . E 3 -13.719 12.617 -33.688 1 25 ? C4A NAD 377 A 1 HETATM 23 O O3 NAD . . . E 3 -6.993 13.17 -27.013 1 25 ? O3 NAD 377 A 1 HETATM 24 P PN NAD . . . E 3 -5.657 13.217 -27.842 1 25 ? PN NAD 377 A 1 HETATM 25 O O1N NAD . . . E 3 -4.626 13.614 -26.864 1 25 ? O1N NAD 377 A 1 HETATM 26 O O2N NAD . . . E 3 -5.654 14.194 -28.944 1 25 ? O2N NAD 377 A 1 HETATM 27 O O5D NAD . . . E 3 -5.118 11.847 -28.406 1 25 ? O5D NAD 377 A 1 HETATM 28 C C5D NAD . . . E 3 -5.447 11.373 -29.748 1 25 ? C5D NAD 377 A 1 HETATM 29 C C4D NAD . . . E 3 -4.775 10.041 -29.95 1 25 ? C4D NAD 377 A 1 HETATM 30 O O4D NAD . . . E 3 -3.416 10.314 -30.117 1 25 ? O4D NAD 377 A 1 HETATM 31 C C3D NAD . . . E 3 -4.759 9.154 -28.726 1 25 ? C3D NAD 377 A 1 HETATM 32 O O3D NAD . . . E 3 -5.841 8.251 -28.816 1 25 ? O3D NAD 377 A 1 HETATM 33 C C2D NAD . . . E 3 -3.484 8.365 -28.836 1 25 ? C2D NAD 377 A 1 HETATM 34 O O2D NAD . . . E 3 -3.778 7.082 -29.371 1 25 ? O2D NAD 377 A 1 HETATM 35 C C1D NAD . . . E 3 -2.68 9.139 -29.895 1 25 ? C1D NAD 377 A 1 HETATM 36 N N1N NAD . . . E 3 -1.328 9.494 -29.425 1 25 ? N1N NAD 377 A 1 HETATM 37 C C2N NAD . . . E 3 -0.336 9.213 -30.229 1 25 ? C2N NAD 377 A 1 HETATM 38 C C3N NAD . . . E 3 0.98 9.402 -29.871 1 25 ? C3N NAD 377 A 1 HETATM 39 C C7N NAD . . . E 3 2.013 9.07 -30.771 1 25 ? C7N NAD 377 A 1 HETATM 40 O O7N NAD . . . E 3 3.211 9.138 -30.494 1 25 ? O7N NAD 377 A 1 HETATM 41 N N7N NAD . . . E 3 1.757 8.882 -32.061 1 25 ? N7N NAD 377 A 1 HETATM 42 C C4N NAD . . . E 3 1.225 9.899 -28.602 1 25 ? C4N NAD 377 A 1 HETATM 43 C C5N NAD . . . E 3 0.173 10.195 -27.771 1 25 ? C5N NAD 377 A 1 HETATM 44 C C6N NAD . . . E 3 -1.101 9.979 -28.221 1 25 ? C6N NAD 377 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #