data_3HUD
#
_model_server_result.job_id            nZaL5KcyYcCYWX3XIm4tCw 
_model_server_result.datetime_utc      '2024-10-16 10:38:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":377}' 
#
_entry.id    3HUD 
#
_exptl.entry_id    3HUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.93 
_cell.angle_beta          102.5 
_cell.angle_gamma         68.82 
_cell.entry_id            3HUD 
_cell.length_a            54.59 
_cell.length_b            45.05 
_cell.length_c            93.86 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc8 B SG CYS 46 B CYS 46 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc9 B NE2 HIS 67 B HIS 67 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc10 B SG CYS 97 B CYS 97 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc11 B SG CYS 100 B CYS 100 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc12 B SG CYS 103 B CYS 103 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc13 B SG CYS 111 B CYS 111 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc14 B SG CYS 174 B CYS 174 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     3HUD 
_atom_sites.fract_transf_matrix[1][1]    0.018318 
_atom_sites.fract_transf_matrix[1][2]    -0.007098 
_atom_sites.fract_transf_matrix[1][3]    0.004413 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023806 
_atom_sites.fract_transf_matrix[2][3]    -0.001166 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010926 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 375 375 ZN ZN . 
D 2 ZN A 1 376 376 ZN ZN . 
E 3 NAD A 1 377 377 NAD NAD . 
F 2 ZN B 1 375 375 ZN ZN . 
G 2 ZN B 1 376 376 ZN ZN . 
H 3 NAD B 1 377 377 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . H 3 6.73 -11.702 -64.737 1 25 ? PA NAD 377 B 1 
HETATM 2 O O1A NAD . . . H 3 5.657 -12.733 -64.826 1 25 ? O1A NAD 377 B 1 
HETATM 3 O O2A NAD . . . H 3 7.796 -12.093 -65.7 1 25 ? O2A NAD 377 B 1 
HETATM 4 O O5B NAD . . . H 3 7.317 -11.648 -63.212 1 25 ? O5B NAD 377 B 1 
HETATM 5 C C5B NAD . . . H 3 6.809 -12.561 -62.166 1 25 ? C5B NAD 377 B 1 
HETATM 6 C C4B NAD . . . H 3 7.894 -13.176 -61.302 1 25 ? C4B NAD 377 B 1 
HETATM 7 O O4B NAD . . . H 3 7.295 -13.482 -60.054 1 25 ? O4B NAD 377 B 1 
HETATM 8 C C3B NAD . . . H 3 8.438 -14.5 -61.839 1 25 ? C3B NAD 377 B 1 
HETATM 9 O O3B NAD . . . H 3 9.815 -14.619 -61.464 1 25 ? O3B NAD 377 B 1 
HETATM 10 C C2B NAD . . . H 3 7.639 -15.533 -61.05 1 25 ? C2B NAD 377 B 1 
HETATM 11 O O2B NAD . . . H 3 8.481 -16.639 -60.854 1 25 ? O2B NAD 377 B 1 
HETATM 12 C C1B NAD . . . H 3 7.586 -14.822 -59.736 1 25 ? C1B NAD 377 B 1 
HETATM 13 N N9A NAD . . . H 3 6.558 -15.353 -58.866 1 25 ? N9A NAD 377 B 1 
HETATM 14 C C8A NAD . . . H 3 5.349 -15.791 -59.163 1 25 ? C8A NAD 377 B 1 
HETATM 15 N N7A NAD . . . H 3 4.63 -16.088 -58.084 1 25 ? N7A NAD 377 B 1 
HETATM 16 C C5A NAD . . . H 3 5.429 -15.826 -57.091 1 25 ? C5A NAD 377 B 1 
HETATM 17 C C6A NAD . . . H 3 5.175 -15.95 -55.749 1 25 ? C6A NAD 377 B 1 
HETATM 18 N N6A NAD . . . H 3 3.97 -16.325 -55.251 1 25 ? N6A NAD 377 B 1 
HETATM 19 N N1A NAD . . . H 3 6.177 -15.619 -54.964 1 25 ? N1A NAD 377 B 1 
HETATM 20 C C2A NAD . . . H 3 7.325 -15.195 -55.49 1 25 ? C2A NAD 377 B 1 
HETATM 21 N N3A NAD . . . H 3 7.584 -15.059 -56.786 1 25 ? N3A NAD 377 B 1 
HETATM 22 C C4A NAD . . . H 3 6.596 -15.388 -57.57 1 25 ? C4A NAD 377 B 1 
HETATM 23 O O3 NAD . . . H 3 6.084 -10.315 -65.087 1 25 ? O3 NAD 377 B 1 
HETATM 24 P PN NAD . . . H 3 6.812 -8.993 -65.553 1 25 ? PN NAD 377 B 1 
HETATM 25 O O1N NAD . . . H 3 6.724 -8.801 -67.035 1 25 ? O1N NAD 377 B 1 
HETATM 26 O O2N NAD . . . H 3 8.251 -8.836 -65.157 1 25 ? O2N NAD 377 B 1 
HETATM 27 O O5D NAD . . . H 3 5.783 -7.863 -64.829 1 25 ? O5D NAD 377 B 1 
HETATM 28 C C5D NAD . . . H 3 5.49 -7.87 -63.373 1 25 ? C5D NAD 377 B 1 
HETATM 29 C C4D NAD . . . H 3 4.227 -7.252 -62.7 1 25 ? C4D NAD 377 B 1 
HETATM 30 O O4D NAD . . . H 3 4.323 -5.818 -62.639 1 25 ? O4D NAD 377 B 1 
HETATM 31 C C3D NAD . . . H 3 2.962 -7.603 -63.438 1 25 ? C3D NAD 377 B 1 
HETATM 32 O O3D NAD . . . H 3 1.974 -7.82 -62.439 1 25 ? O3D NAD 377 B 1 
HETATM 33 C C2D NAD . . . H 3 2.637 -6.281 -64.159 1 25 ? C2D NAD 377 B 1 
HETATM 34 O O2D NAD . . . H 3 1.212 -6.234 -64.238 1 25 ? O2D NAD 377 B 1 
HETATM 35 C C1D NAD . . . H 3 3.168 -5.16 -63.204 1 25 ? C1D NAD 377 B 1 
HETATM 36 N N1N NAD . . . H 3 3.614 -3.935 -63.926 1 25 ? N1N NAD 377 B 1 
HETATM 37 C C2N NAD . . . H 3 3.516 -2.739 -63.365 1 25 ? C2N NAD 377 B 1 
HETATM 38 C C3N NAD . . . H 3 3.958 -1.564 -64.019 1 25 ? C3N NAD 377 B 1 
HETATM 39 C C7N NAD . . . H 3 3.869 -0.266 -63.421 1 25 ? C7N NAD 377 B 1 
HETATM 40 O O7N NAD . . . H 3 4.388 0.718 -63.978 1 25 ? O7N NAD 377 B 1 
HETATM 41 N N7N NAD . . . H 3 3.526 -0.078 -62.129 1 25 ? N7N NAD 377 B 1 
HETATM 42 C C4N NAD . . . H 3 4.495 -1.695 -65.301 1 25 ? C4N NAD 377 B 1 
HETATM 43 C C5N NAD . . . H 3 4.579 -2.945 -65.859 1 25 ? C5N NAD 377 B 1 
HETATM 44 C C6N NAD . . . H 3 4.131 -4.032 -65.139 1 25 ? C6N NAD 377 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#