data_3HUK # _model_server_result.job_id nY9ehPjpAaTwP6Vn_EUpJA _model_server_result.datetime_utc '2024-10-13 00:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3huk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":167}' # _entry.id 3HUK # _exptl.entry_id 3HUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HUK _cell.length_a 60.024 _cell.length_b 60.024 _cell.length_c 96.468 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 3HUK _atom_sites.fract_transf_matrix[1][1] 0.01666 _atom_sites.fract_transf_matrix[1][2] 0.009619 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 165 1 PO4 PO4 . C 3 J0Z A 1 166 1 J0Z J0Z . D 4 BME A 1 167 1 BME BME . E 4 BME A 1 168 1 BME BME . F 5 HOH A 1 169 169 HOH HOH . F 5 HOH A 2 170 1 HOH HOH . F 5 HOH A 3 171 171 HOH HOH . F 5 HOH A 4 172 2 HOH HOH . F 5 HOH A 5 173 173 HOH HOH . F 5 HOH A 6 174 174 HOH HOH . F 5 HOH A 7 175 175 HOH HOH . F 5 HOH A 8 176 176 HOH HOH . F 5 HOH A 9 177 177 HOH HOH . F 5 HOH A 10 178 178 HOH HOH . F 5 HOH A 11 179 179 HOH HOH . F 5 HOH A 12 180 180 HOH HOH . F 5 HOH A 13 181 181 HOH HOH . F 5 HOH A 14 182 182 HOH HOH . F 5 HOH A 15 183 3 HOH HOH . F 5 HOH A 16 184 4 HOH HOH . F 5 HOH A 17 185 185 HOH HOH . F 5 HOH A 18 186 186 HOH HOH . F 5 HOH A 19 187 5 HOH HOH . F 5 HOH A 20 188 6 HOH HOH . F 5 HOH A 21 189 189 HOH HOH . F 5 HOH A 22 190 190 HOH HOH . F 5 HOH A 23 191 7 HOH HOH . F 5 HOH A 24 192 192 HOH HOH . F 5 HOH A 25 193 193 HOH HOH . F 5 HOH A 26 194 8 HOH HOH . F 5 HOH A 27 195 9 HOH HOH . F 5 HOH A 28 196 196 HOH HOH . F 5 HOH A 29 197 197 HOH HOH . F 5 HOH A 30 198 10 HOH HOH . F 5 HOH A 31 199 199 HOH HOH . F 5 HOH A 32 200 200 HOH HOH . F 5 HOH A 33 201 201 HOH HOH . F 5 HOH A 34 202 202 HOH HOH . F 5 HOH A 35 203 203 HOH HOH . F 5 HOH A 36 204 11 HOH HOH . F 5 HOH A 37 205 205 HOH HOH . F 5 HOH A 38 206 206 HOH HOH . F 5 HOH A 39 207 207 HOH HOH . F 5 HOH A 40 208 208 HOH HOH . F 5 HOH A 41 209 209 HOH HOH . F 5 HOH A 42 210 210 HOH HOH . F 5 HOH A 43 211 211 HOH HOH . F 5 HOH A 44 212 212 HOH HOH . F 5 HOH A 45 213 12 HOH HOH . F 5 HOH A 46 214 214 HOH HOH . F 5 HOH A 47 215 13 HOH HOH . F 5 HOH A 48 216 216 HOH HOH . F 5 HOH A 49 217 14 HOH HOH . F 5 HOH A 50 218 218 HOH HOH . F 5 HOH A 51 219 219 HOH HOH . F 5 HOH A 52 220 220 HOH HOH . F 5 HOH A 53 221 221 HOH HOH . F 5 HOH A 54 222 15 HOH HOH . F 5 HOH A 55 223 16 HOH HOH . F 5 HOH A 56 224 17 HOH HOH . F 5 HOH A 57 225 18 HOH HOH . F 5 HOH A 58 226 226 HOH HOH . F 5 HOH A 59 227 227 HOH HOH . F 5 HOH A 60 228 228 HOH HOH . F 5 HOH A 61 229 19 HOH HOH . F 5 HOH A 62 230 230 HOH HOH . F 5 HOH A 63 231 231 HOH HOH . F 5 HOH A 64 232 232 HOH HOH . F 5 HOH A 65 233 233 HOH HOH . F 5 HOH A 66 234 234 HOH HOH . F 5 HOH A 67 235 20 HOH HOH . F 5 HOH A 68 236 236 HOH HOH . F 5 HOH A 69 237 237 HOH HOH . F 5 HOH A 70 238 21 HOH HOH . F 5 HOH A 71 239 239 HOH HOH . F 5 HOH A 72 240 240 HOH HOH . F 5 HOH A 73 241 22 HOH HOH . F 5 HOH A 74 242 242 HOH HOH . F 5 HOH A 75 243 23 HOH HOH . F 5 HOH A 76 244 24 HOH HOH . F 5 HOH A 77 245 245 HOH HOH . F 5 HOH A 78 246 246 HOH HOH . F 5 HOH A 79 247 25 HOH HOH . F 5 HOH A 80 248 26 HOH HOH . F 5 HOH A 81 249 249 HOH HOH . F 5 HOH A 82 250 27 HOH HOH . F 5 HOH A 83 251 28 HOH HOH . F 5 HOH A 84 252 252 HOH HOH . F 5 HOH A 85 253 253 HOH HOH . F 5 HOH A 86 254 29 HOH HOH . F 5 HOH A 87 255 255 HOH HOH . F 5 HOH A 88 256 30 HOH HOH . F 5 HOH A 89 257 257 HOH HOH . F 5 HOH A 90 258 31 HOH HOH . F 5 HOH A 91 259 32 HOH HOH . F 5 HOH A 92 260 33 HOH HOH . F 5 HOH A 93 261 261 HOH HOH . F 5 HOH A 94 262 34 HOH HOH . F 5 HOH A 95 263 263 HOH HOH . F 5 HOH A 96 264 264 HOH HOH . F 5 HOH A 97 265 35 HOH HOH . F 5 HOH A 98 266 36 HOH HOH . F 5 HOH A 99 267 37 HOH HOH . F 5 HOH A 100 268 38 HOH HOH . F 5 HOH A 101 269 269 HOH HOH . F 5 HOH A 102 270 39 HOH HOH . F 5 HOH A 103 271 271 HOH HOH . F 5 HOH A 104 272 272 HOH HOH . F 5 HOH A 105 273 40 HOH HOH . F 5 HOH A 106 274 41 HOH HOH . F 5 HOH A 107 275 42 HOH HOH . F 5 HOH A 108 276 43 HOH HOH . F 5 HOH A 109 277 44 HOH HOH . F 5 HOH A 110 278 278 HOH HOH . F 5 HOH A 111 279 45 HOH HOH . F 5 HOH A 112 280 46 HOH HOH . F 5 HOH A 113 281 47 HOH HOH . F 5 HOH A 114 282 48 HOH HOH . F 5 HOH A 115 283 283 HOH HOH . F 5 HOH A 116 284 49 HOH HOH . F 5 HOH A 117 285 50 HOH HOH . F 5 HOH A 118 286 51 HOH HOH . F 5 HOH A 119 287 53 HOH HOH . F 5 HOH A 120 288 54 HOH HOH . F 5 HOH A 121 289 289 HOH HOH . F 5 HOH A 122 290 55 HOH HOH . F 5 HOH A 123 291 56 HOH HOH . F 5 HOH A 124 292 57 HOH HOH . F 5 HOH A 125 293 58 HOH HOH . F 5 HOH A 126 294 59 HOH HOH . F 5 HOH A 127 295 60 HOH HOH . F 5 HOH A 128 296 296 HOH HOH . F 5 HOH A 129 297 61 HOH HOH . F 5 HOH A 130 298 62 HOH HOH . F 5 HOH A 131 299 299 HOH HOH . F 5 HOH A 132 300 300 HOH HOH . F 5 HOH A 133 301 301 HOH HOH . F 5 HOH A 134 302 302 HOH HOH . F 5 HOH A 135 303 303 HOH HOH . F 5 HOH A 136 304 304 HOH HOH . F 5 HOH A 137 305 305 HOH HOH . F 5 HOH A 138 306 63 HOH HOH . F 5 HOH A 139 307 307 HOH HOH . F 5 HOH A 140 308 308 HOH HOH . F 5 HOH A 141 309 64 HOH HOH . F 5 HOH A 142 310 310 HOH HOH . F 5 HOH A 143 311 66 HOH HOH . F 5 HOH A 144 312 312 HOH HOH . F 5 HOH A 145 313 313 HOH HOH . F 5 HOH A 146 314 67 HOH HOH . F 5 HOH A 147 315 315 HOH HOH . F 5 HOH A 148 316 316 HOH HOH . F 5 HOH A 149 317 317 HOH HOH . F 5 HOH A 150 318 318 HOH HOH . F 5 HOH A 151 319 68 HOH HOH . F 5 HOH A 152 320 320 HOH HOH . F 5 HOH A 153 321 321 HOH HOH . F 5 HOH A 154 322 322 HOH HOH . F 5 HOH A 155 323 323 HOH HOH . F 5 HOH A 156 324 324 HOH HOH . F 5 HOH A 157 325 325 HOH HOH . F 5 HOH A 158 326 326 HOH HOH . F 5 HOH A 159 327 327 HOH HOH . F 5 HOH A 160 328 328 HOH HOH . F 5 HOH A 161 329 329 HOH HOH . F 5 HOH A 162 330 330 HOH HOH . F 5 HOH A 163 331 331 HOH HOH . F 5 HOH A 164 332 332 HOH HOH . F 5 HOH A 165 333 333 HOH HOH . F 5 HOH A 166 334 334 HOH HOH . F 5 HOH A 167 335 335 HOH HOH . F 5 HOH A 168 336 336 HOH HOH . F 5 HOH A 169 337 337 HOH HOH . F 5 HOH A 170 338 338 HOH HOH . F 5 HOH A 171 339 339 HOH HOH . F 5 HOH A 172 340 340 HOH HOH . F 5 HOH A 173 341 341 HOH HOH . F 5 HOH A 174 342 342 HOH HOH . F 5 HOH A 175 343 343 HOH HOH . F 5 HOH A 176 344 344 HOH HOH . F 5 HOH A 177 345 345 HOH HOH . F 5 HOH A 178 346 346 HOH HOH . F 5 HOH A 179 347 347 HOH HOH . F 5 HOH A 180 348 348 HOH HOH . F 5 HOH A 181 349 349 HOH HOH . F 5 HOH A 182 350 350 HOH HOH . F 5 HOH A 183 351 351 HOH HOH . F 5 HOH A 184 352 352 HOH HOH . F 5 HOH A 185 353 353 HOH HOH . F 5 HOH A 186 354 354 HOH HOH . F 5 HOH A 187 355 355 HOH HOH . F 5 HOH A 188 356 356 HOH HOH . F 5 HOH A 189 357 357 HOH HOH . F 5 HOH A 190 358 358 HOH HOH . F 5 HOH A 191 359 359 HOH HOH . F 5 HOH A 192 360 360 HOH HOH . F 5 HOH A 193 361 361 HOH HOH . F 5 HOH A 194 362 362 HOH HOH . F 5 HOH A 195 363 363 HOH HOH . F 5 HOH A 196 364 364 HOH HOH . F 5 HOH A 197 365 365 HOH HOH . F 5 HOH A 198 366 366 HOH HOH . F 5 HOH A 199 367 367 HOH HOH . F 5 HOH A 200 368 368 HOH HOH . F 5 HOH A 201 369 69 HOH HOH . F 5 HOH A 202 370 370 HOH HOH . F 5 HOH A 203 371 371 HOH HOH . F 5 HOH A 204 372 70 HOH HOH . F 5 HOH A 205 373 71 HOH HOH . F 5 HOH A 206 374 72 HOH HOH . F 5 HOH A 207 375 73 HOH HOH . F 5 HOH A 208 376 74 HOH HOH . F 5 HOH A 209 377 75 HOH HOH . F 5 HOH A 210 378 76 HOH HOH . F 5 HOH A 211 379 77 HOH HOH . F 5 HOH A 212 380 78 HOH HOH . F 5 HOH A 213 381 80 HOH HOH . F 5 HOH A 214 382 81 HOH HOH . F 5 HOH A 215 383 82 HOH HOH . F 5 HOH A 216 384 83 HOH HOH . F 5 HOH A 217 385 84 HOH HOH . F 5 HOH A 218 386 85 HOH HOH . F 5 HOH A 219 387 86 HOH HOH . F 5 HOH A 220 388 87 HOH HOH . F 5 HOH A 221 389 88 HOH HOH . F 5 HOH A 222 390 89 HOH HOH . F 5 HOH A 223 391 90 HOH HOH . F 5 HOH A 224 392 91 HOH HOH . F 5 HOH A 225 393 92 HOH HOH . F 5 HOH A 226 394 94 HOH HOH . F 5 HOH A 227 395 95 HOH HOH . F 5 HOH A 228 396 97 HOH HOH . F 5 HOH A 229 397 98 HOH HOH . F 5 HOH A 230 398 99 HOH HOH . F 5 HOH A 231 399 100 HOH HOH . F 5 HOH A 232 400 101 HOH HOH . F 5 HOH A 233 401 102 HOH HOH . F 5 HOH A 234 402 103 HOH HOH . F 5 HOH A 235 403 104 HOH HOH . F 5 HOH A 236 404 105 HOH HOH . F 5 HOH A 237 405 106 HOH HOH . F 5 HOH A 238 406 107 HOH HOH . F 5 HOH A 239 407 108 HOH HOH . F 5 HOH A 240 408 109 HOH HOH . F 5 HOH A 241 409 110 HOH HOH . F 5 HOH A 242 410 111 HOH HOH . F 5 HOH A 243 411 112 HOH HOH . F 5 HOH A 244 412 113 HOH HOH . F 5 HOH A 245 413 114 HOH HOH . F 5 HOH A 246 414 115 HOH HOH . F 5 HOH A 247 415 116 HOH HOH . F 5 HOH A 248 416 117 HOH HOH . F 5 HOH A 249 417 118 HOH HOH . F 5 HOH A 250 418 119 HOH HOH . F 5 HOH A 251 419 120 HOH HOH . F 5 HOH A 252 420 121 HOH HOH . F 5 HOH A 253 421 122 HOH HOH . F 5 HOH A 254 422 123 HOH HOH . F 5 HOH A 255 423 125 HOH HOH . F 5 HOH A 256 424 126 HOH HOH . F 5 HOH A 257 425 128 HOH HOH . F 5 HOH A 258 426 129 HOH HOH . F 5 HOH A 259 427 130 HOH HOH . F 5 HOH A 260 428 131 HOH HOH . F 5 HOH A 261 429 132 HOH HOH . F 5 HOH A 262 430 135 HOH HOH . F 5 HOH A 263 431 136 HOH HOH . F 5 HOH A 264 432 137 HOH HOH . F 5 HOH A 265 433 139 HOH HOH . F 5 HOH A 266 434 140 HOH HOH . F 5 HOH A 267 435 142 HOH HOH . F 5 HOH A 268 436 143 HOH HOH . F 5 HOH A 269 437 144 HOH HOH . F 5 HOH A 270 438 145 HOH HOH . F 5 HOH A 271 439 146 HOH HOH . F 5 HOH A 272 440 148 HOH HOH . F 5 HOH A 273 441 149 HOH HOH . F 5 HOH A 274 442 150 HOH HOH . F 5 HOH A 275 443 152 HOH HOH . F 5 HOH A 276 444 153 HOH HOH . F 5 HOH A 277 445 155 HOH HOH . F 5 HOH A 278 446 156 HOH HOH . F 5 HOH A 279 447 159 HOH HOH . F 5 HOH A 280 448 160 HOH HOH . F 5 HOH A 281 449 164 HOH HOH . F 5 HOH A 282 450 165 HOH HOH . F 5 HOH A 283 451 166 HOH HOH . F 5 HOH A 284 452 167 HOH HOH . F 5 HOH A 285 453 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . D 4 26.026 3.024 9.882 0.5 30.61 ? C1 BME 167 A 1 HETATM 2 C C2 BME . . . D 4 27.53 2.807 9.807 0.5 30.95 ? C2 BME 167 A 1 HETATM 3 O O1 BME . . . D 4 25.655 3.212 11.25 0.5 30.68 ? O1 BME 167 A 1 HETATM 4 S S2 BME . . . D 4 27.968 1.099 10.262 0.5 31.75 ? S2 BME 167 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #