data_3HV3 # _model_server_result.job_id 1MMp-jbBrsf6xM54X6Ll-w _model_server_result.datetime_utc '2024-10-11 01:30:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 3HV3 # _exptl.entry_id 3HV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HV3 _cell.length_a 66.51 _cell.length_b 74.52 _cell.length_c 76.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3HV3 _atom_sites.fract_transf_matrix[1][1] 0.015035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R49 A 1 361 1 R49 R49 . C 3 BOG A 1 1000 1000 BOG BOG . D 4 GOL A 1 362 1 GOL GOL . E 5 HOH A 1 363 1 HOH HOH . E 5 HOH A 2 364 2 HOH HOH . E 5 HOH A 3 365 3 HOH HOH . E 5 HOH A 4 366 4 HOH HOH . E 5 HOH A 5 367 5 HOH HOH . E 5 HOH A 6 368 6 HOH HOH . E 5 HOH A 7 369 7 HOH HOH . E 5 HOH A 8 370 8 HOH HOH . E 5 HOH A 9 371 9 HOH HOH . E 5 HOH A 10 372 10 HOH HOH . E 5 HOH A 11 373 11 HOH HOH . E 5 HOH A 12 374 12 HOH HOH . E 5 HOH A 13 375 13 HOH HOH . E 5 HOH A 14 376 14 HOH HOH . E 5 HOH A 15 377 15 HOH HOH . E 5 HOH A 16 378 16 HOH HOH . E 5 HOH A 17 379 17 HOH HOH . E 5 HOH A 18 380 18 HOH HOH . E 5 HOH A 19 381 19 HOH HOH . E 5 HOH A 20 382 20 HOH HOH . E 5 HOH A 21 383 21 HOH HOH . E 5 HOH A 22 384 22 HOH HOH . E 5 HOH A 23 385 23 HOH HOH . E 5 HOH A 24 386 24 HOH HOH . E 5 HOH A 25 387 25 HOH HOH . E 5 HOH A 26 388 26 HOH HOH . E 5 HOH A 27 389 27 HOH HOH . E 5 HOH A 28 390 28 HOH HOH . E 5 HOH A 29 391 29 HOH HOH . E 5 HOH A 30 392 30 HOH HOH . E 5 HOH A 31 393 31 HOH HOH . E 5 HOH A 32 394 32 HOH HOH . E 5 HOH A 33 395 33 HOH HOH . E 5 HOH A 34 396 34 HOH HOH . E 5 HOH A 35 397 35 HOH HOH . E 5 HOH A 36 398 36 HOH HOH . E 5 HOH A 37 399 37 HOH HOH . E 5 HOH A 38 400 38 HOH HOH . E 5 HOH A 39 401 39 HOH HOH . E 5 HOH A 40 402 40 HOH HOH . E 5 HOH A 41 403 41 HOH HOH . E 5 HOH A 42 404 42 HOH HOH . E 5 HOH A 43 405 43 HOH HOH . E 5 HOH A 44 406 44 HOH HOH . E 5 HOH A 45 407 48 HOH HOH . E 5 HOH A 46 408 49 HOH HOH . E 5 HOH A 47 409 50 HOH HOH . E 5 HOH A 48 410 51 HOH HOH . E 5 HOH A 49 411 52 HOH HOH . E 5 HOH A 50 412 53 HOH HOH . E 5 HOH A 51 413 54 HOH HOH . E 5 HOH A 52 414 55 HOH HOH . E 5 HOH A 53 415 56 HOH HOH . E 5 HOH A 54 416 57 HOH HOH . E 5 HOH A 55 417 59 HOH HOH . E 5 HOH A 56 418 61 HOH HOH . E 5 HOH A 57 419 62 HOH HOH . E 5 HOH A 58 420 63 HOH HOH . E 5 HOH A 59 421 64 HOH HOH . E 5 HOH A 60 422 65 HOH HOH . E 5 HOH A 61 423 66 HOH HOH . E 5 HOH A 62 424 67 HOH HOH . E 5 HOH A 63 425 68 HOH HOH . E 5 HOH A 64 426 69 HOH HOH . E 5 HOH A 65 427 70 HOH HOH . E 5 HOH A 66 428 71 HOH HOH . E 5 HOH A 67 429 72 HOH HOH . E 5 HOH A 68 430 73 HOH HOH . E 5 HOH A 69 431 75 HOH HOH . E 5 HOH A 70 432 77 HOH HOH . E 5 HOH A 71 433 78 HOH HOH . E 5 HOH A 72 434 79 HOH HOH . E 5 HOH A 73 435 80 HOH HOH . E 5 HOH A 74 436 81 HOH HOH . E 5 HOH A 75 437 82 HOH HOH . E 5 HOH A 76 438 83 HOH HOH . E 5 HOH A 77 439 84 HOH HOH . E 5 HOH A 78 440 85 HOH HOH . E 5 HOH A 79 441 86 HOH HOH . E 5 HOH A 80 442 87 HOH HOH . E 5 HOH A 81 443 89 HOH HOH . E 5 HOH A 82 444 90 HOH HOH . E 5 HOH A 83 445 91 HOH HOH . E 5 HOH A 84 446 92 HOH HOH . E 5 HOH A 85 447 93 HOH HOH . E 5 HOH A 86 448 94 HOH HOH . E 5 HOH A 87 449 95 HOH HOH . E 5 HOH A 88 450 96 HOH HOH . E 5 HOH A 89 451 97 HOH HOH . E 5 HOH A 90 452 99 HOH HOH . E 5 HOH A 91 453 100 HOH HOH . E 5 HOH A 92 454 101 HOH HOH . E 5 HOH A 93 455 102 HOH HOH . E 5 HOH A 94 456 103 HOH HOH . E 5 HOH A 95 457 105 HOH HOH . E 5 HOH A 96 458 107 HOH HOH . E 5 HOH A 97 459 108 HOH HOH . E 5 HOH A 98 460 109 HOH HOH . E 5 HOH A 99 461 110 HOH HOH . E 5 HOH A 100 462 111 HOH HOH . E 5 HOH A 101 463 112 HOH HOH . E 5 HOH A 102 464 113 HOH HOH . E 5 HOH A 103 465 114 HOH HOH . E 5 HOH A 104 466 115 HOH HOH . E 5 HOH A 105 467 116 HOH HOH . E 5 HOH A 106 468 117 HOH HOH . E 5 HOH A 107 469 118 HOH HOH . E 5 HOH A 108 470 119 HOH HOH . E 5 HOH A 109 471 120 HOH HOH . E 5 HOH A 110 472 121 HOH HOH . E 5 HOH A 111 473 122 HOH HOH . E 5 HOH A 112 474 123 HOH HOH . E 5 HOH A 113 475 124 HOH HOH . E 5 HOH A 114 476 125 HOH HOH . E 5 HOH A 115 477 126 HOH HOH . E 5 HOH A 116 478 127 HOH HOH . E 5 HOH A 117 479 128 HOH HOH . E 5 HOH A 118 480 129 HOH HOH . E 5 HOH A 119 481 130 HOH HOH . E 5 HOH A 120 482 131 HOH HOH . E 5 HOH A 121 483 132 HOH HOH . E 5 HOH A 122 484 133 HOH HOH . E 5 HOH A 123 485 134 HOH HOH . E 5 HOH A 124 486 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 24.091 -13.053 -6.81 1 61.02 ? C1 BOG 1000 A 1 HETATM 2 O O1 BOG . . . C 3 25.133 -12.685 -7.76 1 59.15 ? O1 BOG 1000 A 1 HETATM 3 C C2 BOG . . . C 3 24.219 -12.349 -5.444 1 60.79 ? C2 BOG 1000 A 1 HETATM 4 O O2 BOG . . . C 3 25.498 -12.616 -4.891 1 60.51 ? O2 BOG 1000 A 1 HETATM 5 C C3 BOG . . . C 3 23.127 -12.737 -4.41 1 60.67 ? C3 BOG 1000 A 1 HETATM 6 O O3 BOG . . . C 3 22.907 -11.611 -3.54 1 58.53 ? O3 BOG 1000 A 1 HETATM 7 C C4 BOG . . . C 3 21.766 -13.174 -5.007 1 61.92 ? C4 BOG 1000 A 1 HETATM 8 O O4 BOG . . . C 3 21.252 -14.32 -4.297 1 61.47 ? O4 BOG 1000 A 1 HETATM 9 C C5 BOG . . . C 3 21.785 -13.481 -6.539 1 62.19 ? C5 BOG 1000 A 1 HETATM 10 O O5 BOG . . . C 3 22.759 -12.763 -7.348 1 61.96 ? O5 BOG 1000 A 1 HETATM 11 C C6 BOG . . . C 3 20.436 -13.189 -7.125 1 60.94 ? C6 BOG 1000 A 1 HETATM 12 O O6 BOG . . . C 3 20.053 -11.876 -6.72 1 65.54 ? O6 BOG 1000 A 1 HETATM 13 C C1' BOG . . . C 3 24.878 -13.445 -8.965 1 57.94 ? C1' BOG 1000 A 1 HETATM 14 C C2' BOG . . . C 3 24.359 -12.544 -10.088 1 56.85 ? C2' BOG 1000 A 1 HETATM 15 C C3' BOG . . . C 3 24.122 -13.296 -11.416 1 58.41 ? C3' BOG 1000 A 1 HETATM 16 C C4' BOG . . . C 3 25.307 -14.185 -11.862 1 59.4 ? C4' BOG 1000 A 1 HETATM 17 C C5' BOG . . . C 3 24.84 -15.297 -12.807 1 58.31 ? C5' BOG 1000 A 1 HETATM 18 C C6' BOG . . . C 3 25.963 -15.731 -13.75 1 58.06 ? C6' BOG 1000 A 1 HETATM 19 C C7' BOG . . . C 3 25.399 -16.092 -15.116 1 56.26 ? C7' BOG 1000 A 1 HETATM 20 C C8' BOG . . . C 3 26.403 -16.895 -15.948 1 57.38 ? C8' BOG 1000 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #