data_3HV4 # _model_server_result.job_id vR1SyUMjDlZqfowzbE4AYA _model_server_result.datetime_utc '2024-11-25 03:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":362}' # _entry.id 3HV4 # _exptl.entry_id 3HV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.9 _cell.angle_gamma 90 _cell.entry_id 3HV4 _cell.length_a 70.64 _cell.length_b 74.06 _cell.length_c 72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 H N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3HV4 _atom_sites.fract_transf_matrix[1][1] 0.014156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000964 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 L51 A 1 361 1 L51 L51 . D 3 BOG A 1 1000 1000 BOG BOG . E 4 MES A 1 362 1 MES MES . F 3 BOG A 1 363 1000 BOG BOG . G 2 L51 B 1 361 1 L51 L51 . H 3 BOG B 1 362 1 BOG BOG . I 5 HOH A 1 364 1 HOH HOH . I 5 HOH A 2 365 2 HOH HOH . I 5 HOH A 3 366 3 HOH HOH . I 5 HOH A 4 367 4 HOH HOH . I 5 HOH A 5 368 7 HOH HOH . I 5 HOH A 6 369 8 HOH HOH . I 5 HOH A 7 370 9 HOH HOH . I 5 HOH A 8 371 11 HOH HOH . I 5 HOH A 9 372 12 HOH HOH . I 5 HOH A 10 373 14 HOH HOH . I 5 HOH A 11 374 16 HOH HOH . I 5 HOH A 12 375 18 HOH HOH . I 5 HOH A 13 376 20 HOH HOH . I 5 HOH A 14 377 23 HOH HOH . I 5 HOH A 15 378 24 HOH HOH . I 5 HOH A 16 379 28 HOH HOH . I 5 HOH A 17 380 31 HOH HOH . I 5 HOH A 18 381 33 HOH HOH . I 5 HOH A 19 382 34 HOH HOH . I 5 HOH A 20 383 35 HOH HOH . I 5 HOH A 21 384 36 HOH HOH . I 5 HOH A 22 385 37 HOH HOH . I 5 HOH A 23 386 38 HOH HOH . I 5 HOH A 24 387 39 HOH HOH . I 5 HOH A 25 388 40 HOH HOH . I 5 HOH A 26 389 43 HOH HOH . I 5 HOH A 27 390 45 HOH HOH . I 5 HOH A 28 391 46 HOH HOH . I 5 HOH A 29 392 47 HOH HOH . I 5 HOH A 30 393 51 HOH HOH . I 5 HOH A 31 394 52 HOH HOH . I 5 HOH A 32 395 56 HOH HOH . I 5 HOH A 33 396 59 HOH HOH . I 5 HOH A 34 397 60 HOH HOH . I 5 HOH A 35 398 62 HOH HOH . I 5 HOH A 36 399 64 HOH HOH . I 5 HOH A 37 400 66 HOH HOH . I 5 HOH A 38 401 68 HOH HOH . I 5 HOH A 39 402 69 HOH HOH . I 5 HOH A 40 403 70 HOH HOH . I 5 HOH A 41 404 71 HOH HOH . I 5 HOH A 42 405 73 HOH HOH . I 5 HOH A 43 406 74 HOH HOH . I 5 HOH A 44 407 75 HOH HOH . I 5 HOH A 45 408 76 HOH HOH . I 5 HOH A 46 409 77 HOH HOH . I 5 HOH A 47 410 78 HOH HOH . I 5 HOH A 48 411 79 HOH HOH . I 5 HOH A 49 412 80 HOH HOH . I 5 HOH A 50 413 81 HOH HOH . I 5 HOH A 51 414 83 HOH HOH . I 5 HOH A 52 415 84 HOH HOH . I 5 HOH A 53 416 85 HOH HOH . I 5 HOH A 54 417 86 HOH HOH . I 5 HOH A 55 418 87 HOH HOH . I 5 HOH A 56 419 88 HOH HOH . I 5 HOH A 57 420 89 HOH HOH . I 5 HOH A 58 421 90 HOH HOH . I 5 HOH A 59 422 91 HOH HOH . I 5 HOH A 60 423 92 HOH HOH . I 5 HOH A 61 424 93 HOH HOH . I 5 HOH A 62 425 94 HOH HOH . I 5 HOH A 63 426 95 HOH HOH . I 5 HOH A 64 427 96 HOH HOH . I 5 HOH A 65 428 97 HOH HOH . I 5 HOH A 66 429 98 HOH HOH . I 5 HOH A 67 430 99 HOH HOH . I 5 HOH A 68 431 100 HOH HOH . I 5 HOH A 69 432 102 HOH HOH . I 5 HOH A 70 433 138 HOH HOH . I 5 HOH A 71 434 139 HOH HOH . I 5 HOH A 72 435 140 HOH HOH . I 5 HOH A 73 436 141 HOH HOH . I 5 HOH A 74 437 142 HOH HOH . I 5 HOH A 75 438 143 HOH HOH . I 5 HOH A 76 439 144 HOH HOH . I 5 HOH A 77 440 146 HOH HOH . I 5 HOH A 78 441 147 HOH HOH . I 5 HOH A 79 442 148 HOH HOH . I 5 HOH A 80 443 149 HOH HOH . I 5 HOH A 81 444 150 HOH HOH . I 5 HOH A 82 445 151 HOH HOH . I 5 HOH A 83 446 152 HOH HOH . I 5 HOH A 84 447 161 HOH HOH . I 5 HOH A 85 448 162 HOH HOH . I 5 HOH A 86 449 163 HOH HOH . I 5 HOH A 87 450 165 HOH HOH . J 5 HOH B 1 363 6 HOH HOH . J 5 HOH B 2 364 10 HOH HOH . J 5 HOH B 3 365 13 HOH HOH . J 5 HOH B 4 366 15 HOH HOH . J 5 HOH B 5 367 17 HOH HOH . J 5 HOH B 6 368 19 HOH HOH . J 5 HOH B 7 369 21 HOH HOH . J 5 HOH B 8 370 22 HOH HOH . J 5 HOH B 9 371 25 HOH HOH . J 5 HOH B 10 372 26 HOH HOH . J 5 HOH B 11 373 27 HOH HOH . J 5 HOH B 12 374 29 HOH HOH . J 5 HOH B 13 375 30 HOH HOH . J 5 HOH B 14 376 32 HOH HOH . J 5 HOH B 15 377 41 HOH HOH . J 5 HOH B 16 378 42 HOH HOH . J 5 HOH B 17 379 44 HOH HOH . J 5 HOH B 18 380 48 HOH HOH . J 5 HOH B 19 381 49 HOH HOH . J 5 HOH B 20 382 55 HOH HOH . J 5 HOH B 21 383 57 HOH HOH . J 5 HOH B 22 384 58 HOH HOH . J 5 HOH B 23 385 61 HOH HOH . J 5 HOH B 24 386 63 HOH HOH . J 5 HOH B 25 387 65 HOH HOH . J 5 HOH B 26 388 67 HOH HOH . J 5 HOH B 27 389 72 HOH HOH . J 5 HOH B 28 390 103 HOH HOH . J 5 HOH B 29 391 104 HOH HOH . J 5 HOH B 30 392 105 HOH HOH . J 5 HOH B 31 393 106 HOH HOH . J 5 HOH B 32 394 107 HOH HOH . J 5 HOH B 33 395 108 HOH HOH . J 5 HOH B 34 396 109 HOH HOH . J 5 HOH B 35 397 110 HOH HOH . J 5 HOH B 36 398 111 HOH HOH . J 5 HOH B 37 399 112 HOH HOH . J 5 HOH B 38 400 113 HOH HOH . J 5 HOH B 39 401 114 HOH HOH . J 5 HOH B 40 402 115 HOH HOH . J 5 HOH B 41 403 116 HOH HOH . J 5 HOH B 42 404 117 HOH HOH . J 5 HOH B 43 405 118 HOH HOH . J 5 HOH B 44 406 119 HOH HOH . J 5 HOH B 45 407 120 HOH HOH . J 5 HOH B 46 408 121 HOH HOH . J 5 HOH B 47 409 122 HOH HOH . J 5 HOH B 48 410 123 HOH HOH . J 5 HOH B 49 411 124 HOH HOH . J 5 HOH B 50 412 125 HOH HOH . J 5 HOH B 51 413 126 HOH HOH . J 5 HOH B 52 414 127 HOH HOH . J 5 HOH B 53 415 128 HOH HOH . J 5 HOH B 54 416 129 HOH HOH . J 5 HOH B 55 417 130 HOH HOH . J 5 HOH B 56 418 132 HOH HOH . J 5 HOH B 57 419 133 HOH HOH . J 5 HOH B 58 420 134 HOH HOH . J 5 HOH B 59 421 135 HOH HOH . J 5 HOH B 60 422 136 HOH HOH . J 5 HOH B 61 423 137 HOH HOH . J 5 HOH B 62 424 153 HOH HOH . J 5 HOH B 63 425 154 HOH HOH . J 5 HOH B 64 426 155 HOH HOH . J 5 HOH B 65 427 156 HOH HOH . J 5 HOH B 66 428 157 HOH HOH . J 5 HOH B 67 429 158 HOH HOH . J 5 HOH B 68 430 159 HOH HOH . J 5 HOH B 69 431 160 HOH HOH . J 5 HOH B 70 432 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . H 3 -9.828 9.364 23.195 1 12.64 ? C1 BOG 362 B 1 HETATM 2 O O1 BOG . . . H 3 -10.196 8.189 23.901 1 8.93 ? O1 BOG 362 B 1 HETATM 3 C C2 BOG . . . H 3 -10.726 10.57 23.47 1 13.26 ? C2 BOG 362 B 1 HETATM 4 O O2 BOG . . . H 3 -12.049 10.198 23.143 1 13.81 ? O2 BOG 362 B 1 HETATM 5 C C3 BOG . . . H 3 -10.26 11.771 22.632 1 14.26 ? C3 BOG 362 B 1 HETATM 6 O O3 BOG . . . H 3 -10.952 12.954 22.987 1 16.68 ? O3 BOG 362 B 1 HETATM 7 C C4 BOG . . . H 3 -8.784 12.057 22.895 1 15.94 ? C4 BOG 362 B 1 HETATM 8 O O4 BOG . . . H 3 -8.376 13.071 21.983 1 18.17 ? O4 BOG 362 B 1 HETATM 9 C C5 BOG . . . H 3 -7.947 10.771 22.691 1 16.88 ? C5 BOG 362 B 1 HETATM 10 O O5 BOG . . . H 3 -8.452 9.671 23.497 1 15.84 ? O5 BOG 362 B 1 HETATM 11 C C6 BOG . . . H 3 -6.542 10.975 23.153 1 16.99 ? C6 BOG 362 B 1 HETATM 12 O O6 BOG . . . H 3 -6.636 11.272 24.533 1 20.35 ? O6 BOG 362 B 1 HETATM 13 C C1' BOG . . . H 3 -9.683 7.063 23.122 1 9.2 ? C1' BOG 362 B 1 HETATM 14 C C2' BOG . . . H 3 -10.791 6.249 22.432 1 9.75 ? C2' BOG 362 B 1 HETATM 15 C C3' BOG . . . H 3 -10.243 4.912 21.938 1 10.16 ? C3' BOG 362 B 1 HETATM 16 C C4' BOG . . . H 3 -11.341 3.923 21.542 1 11.8 ? C4' BOG 362 B 1 HETATM 17 C C5' BOG . . . H 3 -10.741 2.775 20.746 1 14.2 ? C5' BOG 362 B 1 HETATM 18 C C6' BOG . . . H 3 -11.818 1.819 20.187 1 14.9 ? C6' BOG 362 B 1 HETATM 19 C C7' BOG . . . H 3 -11.237 0.407 20.186 1 15.48 ? C7' BOG 362 B 1 HETATM 20 C C8' BOG . . . H 3 -11.502 -0.353 18.878 1 19.1 ? C8' BOG 362 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 20 #