data_3HV6 # _model_server_result.job_id JQQPDasm-G-A3Oa0Kdr4Dw _model_server_result.datetime_utc '2024-11-26 04:30:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":362}' # _entry.id 3HV6 # _exptl.entry_id 3HV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HV6 _cell.length_a 66.41 _cell.length_b 74.66 _cell.length_c 78.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3HV6 _atom_sites.fract_transf_matrix[1][1] 0.015058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 1000 1000 BOG BOG . C 3 R39 A 1 361 1 R39 R39 . D 2 BOG A 1 362 1000 BOG BOG . E 4 HOH A 1 363 1 HOH HOH . E 4 HOH A 2 364 2 HOH HOH . E 4 HOH A 3 365 3 HOH HOH . E 4 HOH A 4 366 4 HOH HOH . E 4 HOH A 5 367 5 HOH HOH . E 4 HOH A 6 368 6 HOH HOH . E 4 HOH A 7 369 7 HOH HOH . E 4 HOH A 8 370 8 HOH HOH . E 4 HOH A 9 371 9 HOH HOH . E 4 HOH A 10 372 10 HOH HOH . E 4 HOH A 11 373 11 HOH HOH . E 4 HOH A 12 374 12 HOH HOH . E 4 HOH A 13 375 14 HOH HOH . E 4 HOH A 14 376 15 HOH HOH . E 4 HOH A 15 377 16 HOH HOH . E 4 HOH A 16 378 17 HOH HOH . E 4 HOH A 17 379 18 HOH HOH . E 4 HOH A 18 380 19 HOH HOH . E 4 HOH A 19 381 20 HOH HOH . E 4 HOH A 20 382 21 HOH HOH . E 4 HOH A 21 383 22 HOH HOH . E 4 HOH A 22 384 23 HOH HOH . E 4 HOH A 23 385 24 HOH HOH . E 4 HOH A 24 386 25 HOH HOH . E 4 HOH A 25 387 26 HOH HOH . E 4 HOH A 26 388 27 HOH HOH . E 4 HOH A 27 389 28 HOH HOH . E 4 HOH A 28 390 29 HOH HOH . E 4 HOH A 29 391 30 HOH HOH . E 4 HOH A 30 392 31 HOH HOH . E 4 HOH A 31 393 32 HOH HOH . E 4 HOH A 32 394 33 HOH HOH . E 4 HOH A 33 395 34 HOH HOH . E 4 HOH A 34 396 35 HOH HOH . E 4 HOH A 35 397 36 HOH HOH . E 4 HOH A 36 398 37 HOH HOH . E 4 HOH A 37 399 38 HOH HOH . E 4 HOH A 38 400 39 HOH HOH . E 4 HOH A 39 401 40 HOH HOH . E 4 HOH A 40 402 41 HOH HOH . E 4 HOH A 41 403 42 HOH HOH . E 4 HOH A 42 404 43 HOH HOH . E 4 HOH A 43 405 44 HOH HOH . E 4 HOH A 44 406 45 HOH HOH . E 4 HOH A 45 407 46 HOH HOH . E 4 HOH A 46 408 47 HOH HOH . E 4 HOH A 47 409 48 HOH HOH . E 4 HOH A 48 410 49 HOH HOH . E 4 HOH A 49 411 50 HOH HOH . E 4 HOH A 50 412 51 HOH HOH . E 4 HOH A 51 413 52 HOH HOH . E 4 HOH A 52 414 53 HOH HOH . E 4 HOH A 53 415 54 HOH HOH . E 4 HOH A 54 416 55 HOH HOH . E 4 HOH A 55 417 56 HOH HOH . E 4 HOH A 56 418 57 HOH HOH . E 4 HOH A 57 419 58 HOH HOH . E 4 HOH A 58 420 59 HOH HOH . E 4 HOH A 59 421 60 HOH HOH . E 4 HOH A 60 422 61 HOH HOH . E 4 HOH A 61 423 62 HOH HOH . E 4 HOH A 62 424 63 HOH HOH . E 4 HOH A 63 425 64 HOH HOH . E 4 HOH A 64 426 65 HOH HOH . E 4 HOH A 65 427 66 HOH HOH . E 4 HOH A 66 428 67 HOH HOH . E 4 HOH A 67 429 68 HOH HOH . E 4 HOH A 68 430 69 HOH HOH . E 4 HOH A 69 431 70 HOH HOH . E 4 HOH A 70 432 71 HOH HOH . E 4 HOH A 71 433 72 HOH HOH . E 4 HOH A 72 434 73 HOH HOH . E 4 HOH A 73 435 74 HOH HOH . E 4 HOH A 74 436 75 HOH HOH . E 4 HOH A 75 437 77 HOH HOH . E 4 HOH A 76 438 78 HOH HOH . E 4 HOH A 77 439 79 HOH HOH . E 4 HOH A 78 440 80 HOH HOH . E 4 HOH A 79 441 81 HOH HOH . E 4 HOH A 80 442 82 HOH HOH . E 4 HOH A 81 443 83 HOH HOH . E 4 HOH A 82 444 84 HOH HOH . E 4 HOH A 83 445 85 HOH HOH . E 4 HOH A 84 446 86 HOH HOH . E 4 HOH A 85 447 87 HOH HOH . E 4 HOH A 86 448 88 HOH HOH . E 4 HOH A 87 449 89 HOH HOH . E 4 HOH A 88 450 90 HOH HOH . E 4 HOH A 89 451 91 HOH HOH . E 4 HOH A 90 452 92 HOH HOH . E 4 HOH A 91 453 94 HOH HOH . E 4 HOH A 92 454 95 HOH HOH . E 4 HOH A 93 455 96 HOH HOH . E 4 HOH A 94 456 98 HOH HOH . E 4 HOH A 95 457 99 HOH HOH . E 4 HOH A 96 458 100 HOH HOH . E 4 HOH A 97 459 101 HOH HOH . E 4 HOH A 98 460 102 HOH HOH . E 4 HOH A 99 461 103 HOH HOH . E 4 HOH A 100 462 104 HOH HOH . E 4 HOH A 101 463 105 HOH HOH . E 4 HOH A 102 464 106 HOH HOH . E 4 HOH A 103 465 107 HOH HOH . E 4 HOH A 104 466 108 HOH HOH . E 4 HOH A 105 467 109 HOH HOH . E 4 HOH A 106 468 110 HOH HOH . E 4 HOH A 107 469 112 HOH HOH . E 4 HOH A 108 470 113 HOH HOH . E 4 HOH A 109 471 114 HOH HOH . E 4 HOH A 110 472 115 HOH HOH . E 4 HOH A 111 473 116 HOH HOH . E 4 HOH A 112 474 117 HOH HOH . E 4 HOH A 113 475 118 HOH HOH . E 4 HOH A 114 476 119 HOH HOH . E 4 HOH A 115 477 120 HOH HOH . E 4 HOH A 116 478 121 HOH HOH . E 4 HOH A 117 479 122 HOH HOH . E 4 HOH A 118 480 123 HOH HOH . E 4 HOH A 119 481 124 HOH HOH . E 4 HOH A 120 482 125 HOH HOH . E 4 HOH A 121 483 126 HOH HOH . E 4 HOH A 122 484 127 HOH HOH . E 4 HOH A 123 485 128 HOH HOH . E 4 HOH A 124 486 129 HOH HOH . E 4 HOH A 125 487 130 HOH HOH . E 4 HOH A 126 488 131 HOH HOH . E 4 HOH A 127 489 132 HOH HOH . E 4 HOH A 128 490 133 HOH HOH . E 4 HOH A 129 491 134 HOH HOH . E 4 HOH A 130 492 135 HOH HOH . E 4 HOH A 131 493 136 HOH HOH . E 4 HOH A 132 494 137 HOH HOH . E 4 HOH A 133 495 138 HOH HOH . E 4 HOH A 134 496 139 HOH HOH . E 4 HOH A 135 497 140 HOH HOH . E 4 HOH A 136 498 141 HOH HOH . E 4 HOH A 137 499 142 HOH HOH . E 4 HOH A 138 500 143 HOH HOH . E 4 HOH A 139 501 144 HOH HOH . E 4 HOH A 140 502 146 HOH HOH . E 4 HOH A 141 503 147 HOH HOH . E 4 HOH A 142 504 148 HOH HOH . E 4 HOH A 143 505 149 HOH HOH . E 4 HOH A 144 506 150 HOH HOH . E 4 HOH A 145 507 151 HOH HOH . E 4 HOH A 146 508 152 HOH HOH . E 4 HOH A 147 509 153 HOH HOH . E 4 HOH A 148 510 154 HOH HOH . E 4 HOH A 149 511 155 HOH HOH . E 4 HOH A 150 512 156 HOH HOH . E 4 HOH A 151 513 157 HOH HOH . E 4 HOH A 152 514 158 HOH HOH . E 4 HOH A 153 515 159 HOH HOH . E 4 HOH A 154 516 160 HOH HOH . E 4 HOH A 155 517 161 HOH HOH . E 4 HOH A 156 518 162 HOH HOH . E 4 HOH A 157 519 163 HOH HOH . E 4 HOH A 158 520 164 HOH HOH . E 4 HOH A 159 521 165 HOH HOH . E 4 HOH A 160 522 166 HOH HOH . E 4 HOH A 161 523 167 HOH HOH . E 4 HOH A 162 524 168 HOH HOH . E 4 HOH A 163 525 169 HOH HOH . E 4 HOH A 164 526 170 HOH HOH . E 4 HOH A 165 527 171 HOH HOH . E 4 HOH A 166 528 172 HOH HOH . E 4 HOH A 167 529 173 HOH HOH . E 4 HOH A 168 530 174 HOH HOH . E 4 HOH A 169 531 175 HOH HOH . E 4 HOH A 170 532 176 HOH HOH . E 4 HOH A 171 533 177 HOH HOH . E 4 HOH A 172 534 178 HOH HOH . E 4 HOH A 173 535 179 HOH HOH . E 4 HOH A 174 536 180 HOH HOH . E 4 HOH A 175 537 181 HOH HOH . E 4 HOH A 176 538 182 HOH HOH . E 4 HOH A 177 539 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 2 20.314 -23.277 -11.099 1 60.08 ? C1 BOG 362 A 1 HETATM 2 O O1 BOG . . . D 2 20.835 -24.433 -11.831 1 60.53 ? O1 BOG 362 A 1 HETATM 3 C C2 BOG . . . D 2 19.348 -23.726 -9.993 1 59.88 ? C2 BOG 362 A 1 HETATM 4 O O2 BOG . . . D 2 18.253 -24.443 -10.566 1 60.73 ? O2 BOG 362 A 1 HETATM 5 C C3 BOG . . . D 2 18.86 -22.485 -9.229 1 59.23 ? C3 BOG 362 A 1 HETATM 6 O O3 BOG . . . D 2 17.78 -22.794 -8.327 1 60.26 ? O3 BOG 362 A 1 HETATM 7 C C4 BOG . . . D 2 20.078 -21.86 -8.518 1 58.55 ? C4 BOG 362 A 1 HETATM 8 O O4 BOG . . . D 2 19.697 -20.828 -7.593 1 56.9 ? O4 BOG 362 A 1 HETATM 9 C C5 BOG . . . D 2 21.042 -21.332 -9.617 1 57.82 ? C5 BOG 362 A 1 HETATM 10 O O5 BOG . . . D 2 21.393 -22.406 -10.583 1 59.49 ? O5 BOG 362 A 1 HETATM 11 C C6 BOG . . . D 2 22.337 -20.636 -9.106 1 56.14 ? C6 BOG 362 A 1 HETATM 12 O O6 BOG . . . D 2 23.079 -21.446 -8.184 1 50.92 ? O6 BOG 362 A 1 HETATM 13 C C1' BOG . . . D 2 20.458 -24.353 -13.231 1 60.35 ? C1' BOG 362 A 1 HETATM 14 C C2' BOG . . . D 2 21.13 -25.477 -14.022 1 60.42 ? C2' BOG 362 A 1 HETATM 15 C C3' BOG . . . D 2 21.765 -24.944 -15.311 1 60.88 ? C3' BOG 362 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #