data_3HW6 # _model_server_result.job_id 7JB-TR6yRcW5SShk2r9R-g _model_server_result.datetime_utc '2024-11-01 02:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":257}' # _entry.id 3HW6 # _exptl.entry_id 3HW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.06 _cell.angle_beta 96.49 _cell.angle_gamma 109.66 _cell.entry_id 3HW6 _cell.length_a 51.504 _cell.length_b 60.211 _cell.length_c 67.215 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 85 A GLU 80 1_555 F MN MN . A MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A OD2 ASP 113 A ASP 108 1_555 E MN MN . A MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A OD1 ASP 113 A ASP 108 1_555 F MN MN . A MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc4 A OE2 GLU 124 A GLU 119 1_555 E MN MN . A MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 A O ILE 125 A ILE 120 1_555 E MN MN . A MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc6 F MN MN . A MN 258 1_555 M O HOH . A HOH 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 B OE2 GLU 85 B GLU 80 1_555 G MN MN . B MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 B OD1 ASP 113 B ASP 108 1_555 G MN MN . B MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc9 B OD2 ASP 113 B ASP 108 1_555 H MN MN . B MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 B OE2 GLU 124 B GLU 119 1_555 H MN MN . B MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc11 B O ILE 125 B ILE 120 1_555 H MN MN . B MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc12 C OD2 ASP 113 C ASP 108 1_555 I MN MN . C MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc13 C OD1 ASP 113 C ASP 108 1_555 J MN MN . C MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc14 C O ILE 125 C ILE 120 1_555 I MN MN . C MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc15 D OE1 GLU 85 D GLU 80 1_555 L MN MN . D MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc16 D OD2 ASP 113 D ASP 108 1_555 K MN MN . D MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc17 D OD1 ASP 113 D ASP 108 1_555 L MN MN . D MN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc18 D OE2 GLU 124 D GLU 119 1_555 K MN MN . D MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc19 D O ILE 125 D ILE 120 1_555 K MN MN . D MN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HW6 _atom_sites.fract_transf_matrix[1][1] 0.019416 _atom_sites.fract_transf_matrix[1][2] 0.006938 _atom_sites.fract_transf_matrix[1][3] 0.003313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017637 _atom_sites.fract_transf_matrix[2][3] 0.002739 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 257 1 MN MN . F 2 MN A 1 258 2 MN MN . G 2 MN B 1 257 3 MN MN . H 2 MN B 1 258 4 MN MN . I 2 MN C 1 257 7 MN MN . J 2 MN C 1 258 8 MN MN . K 2 MN D 1 257 5 MN MN . L 2 MN D 1 258 6 MN MN . M 3 HOH A 1 259 1 HOH HOH . M 3 HOH A 2 260 8 HOH HOH . M 3 HOH A 3 261 9 HOH HOH . M 3 HOH A 4 263 11 HOH HOH . M 3 HOH A 5 264 14 HOH HOH . M 3 HOH A 6 265 21 HOH HOH . M 3 HOH A 7 266 23 HOH HOH . M 3 HOH A 8 267 25 HOH HOH . M 3 HOH A 9 268 26 HOH HOH . M 3 HOH A 10 269 28 HOH HOH . M 3 HOH A 11 270 32 HOH HOH . M 3 HOH A 12 271 37 HOH HOH . M 3 HOH A 13 272 46 HOH HOH . M 3 HOH A 14 273 47 HOH HOH . M 3 HOH A 15 274 55 HOH HOH . M 3 HOH A 16 275 56 HOH HOH . M 3 HOH A 17 276 60 HOH HOH . M 3 HOH A 18 277 64 HOH HOH . M 3 HOH A 19 278 71 HOH HOH . M 3 HOH A 20 279 77 HOH HOH . M 3 HOH A 21 280 84 HOH HOH . M 3 HOH A 22 281 87 HOH HOH . M 3 HOH A 23 282 92 HOH HOH . M 3 HOH A 24 283 93 HOH HOH . M 3 HOH A 25 284 94 HOH HOH . M 3 HOH A 26 285 103 HOH HOH . M 3 HOH A 27 286 105 HOH HOH . M 3 HOH A 28 287 106 HOH HOH . M 3 HOH A 29 288 107 HOH HOH . M 3 HOH A 30 289 109 HOH HOH . M 3 HOH A 31 290 111 HOH HOH . M 3 HOH A 32 291 112 HOH HOH . M 3 HOH A 33 292 114 HOH HOH . M 3 HOH A 34 293 119 HOH HOH . M 3 HOH A 35 294 126 HOH HOH . M 3 HOH A 36 295 128 HOH HOH . M 3 HOH A 37 296 129 HOH HOH . M 3 HOH A 38 297 135 HOH HOH . N 3 HOH B 1 259 5 HOH HOH . N 3 HOH B 2 260 16 HOH HOH . N 3 HOH B 3 261 22 HOH HOH . N 3 HOH B 4 262 27 HOH HOH . N 3 HOH B 5 263 29 HOH HOH . N 3 HOH B 6 264 36 HOH HOH . N 3 HOH B 7 265 40 HOH HOH . N 3 HOH B 8 266 43 HOH HOH . N 3 HOH B 9 267 74 HOH HOH . N 3 HOH B 10 268 81 HOH HOH . N 3 HOH B 11 269 82 HOH HOH . N 3 HOH B 12 270 86 HOH HOH . N 3 HOH B 13 271 89 HOH HOH . N 3 HOH B 14 272 95 HOH HOH . N 3 HOH B 15 273 101 HOH HOH . N 3 HOH B 16 274 102 HOH HOH . N 3 HOH B 17 275 108 HOH HOH . N 3 HOH B 18 276 115 HOH HOH . N 3 HOH B 19 277 116 HOH HOH . N 3 HOH B 20 278 117 HOH HOH . N 3 HOH B 21 279 121 HOH HOH . N 3 HOH B 22 280 122 HOH HOH . N 3 HOH B 23 281 124 HOH HOH . N 3 HOH B 24 282 127 HOH HOH . N 3 HOH B 25 283 132 HOH HOH . O 3 HOH C 1 259 4 HOH HOH . O 3 HOH C 2 260 7 HOH HOH . O 3 HOH C 3 261 12 HOH HOH . O 3 HOH C 4 262 10 HOH HOH . O 3 HOH C 5 263 18 HOH HOH . O 3 HOH C 6 264 19 HOH HOH . O 3 HOH C 7 265 20 HOH HOH . O 3 HOH C 8 266 24 HOH HOH . O 3 HOH C 9 267 38 HOH HOH . O 3 HOH C 10 268 42 HOH HOH . O 3 HOH C 11 269 44 HOH HOH . O 3 HOH C 12 270 49 HOH HOH . O 3 HOH C 13 271 51 HOH HOH . O 3 HOH C 14 272 53 HOH HOH . O 3 HOH C 15 273 58 HOH HOH . O 3 HOH C 16 274 59 HOH HOH . O 3 HOH C 17 275 61 HOH HOH . O 3 HOH C 18 276 63 HOH HOH . O 3 HOH C 19 277 65 HOH HOH . O 3 HOH C 20 278 67 HOH HOH . O 3 HOH C 21 279 70 HOH HOH . O 3 HOH C 22 280 72 HOH HOH . O 3 HOH C 23 281 73 HOH HOH . O 3 HOH C 24 282 79 HOH HOH . O 3 HOH C 25 283 80 HOH HOH . O 3 HOH C 26 284 83 HOH HOH . O 3 HOH C 27 285 88 HOH HOH . O 3 HOH C 28 286 90 HOH HOH . O 3 HOH C 29 287 91 HOH HOH . O 3 HOH C 30 288 96 HOH HOH . O 3 HOH C 31 289 98 HOH HOH . O 3 HOH C 32 290 100 HOH HOH . O 3 HOH C 33 291 104 HOH HOH . O 3 HOH C 34 292 113 HOH HOH . O 3 HOH C 35 293 118 HOH HOH . O 3 HOH C 36 294 120 HOH HOH . O 3 HOH C 37 295 123 HOH HOH . O 3 HOH C 38 296 125 HOH HOH . O 3 HOH C 39 297 130 HOH HOH . O 3 HOH C 40 298 131 HOH HOH . O 3 HOH C 41 299 133 HOH HOH . O 3 HOH C 42 300 17 HOH HOH . P 3 HOH D 1 259 3 HOH HOH . P 3 HOH D 2 260 6 HOH HOH . P 3 HOH D 3 261 13 HOH HOH . P 3 HOH D 4 262 15 HOH HOH . P 3 HOH D 5 263 30 HOH HOH . P 3 HOH D 6 264 31 HOH HOH . P 3 HOH D 7 265 33 HOH HOH . P 3 HOH D 8 266 39 HOH HOH . P 3 HOH D 9 267 41 HOH HOH . P 3 HOH D 10 268 48 HOH HOH . P 3 HOH D 11 269 50 HOH HOH . P 3 HOH D 12 270 52 HOH HOH . P 3 HOH D 13 271 57 HOH HOH . P 3 HOH D 14 272 62 HOH HOH . P 3 HOH D 15 273 66 HOH HOH . P 3 HOH D 16 274 68 HOH HOH . P 3 HOH D 17 275 69 HOH HOH . P 3 HOH D 18 276 75 HOH HOH . P 3 HOH D 19 277 76 HOH HOH . P 3 HOH D 20 278 78 HOH HOH . P 3 HOH D 21 279 85 HOH HOH . P 3 HOH D 22 280 97 HOH HOH . P 3 HOH D 23 281 99 HOH HOH . P 3 HOH D 24 282 110 HOH HOH . P 3 HOH D 25 283 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 41.285 _atom_site.Cartn_y -19.597 _atom_site.Cartn_z -23.007 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 257 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #