data_3HWB # _model_server_result.job_id pj5UkaoNupp4DaB1FlIvCg _model_server_result.datetime_utc '2025-07-04 11:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":355}' # _entry.id 3HWB # _exptl.entry_id 3HWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HWB _cell.length_a 117.192 _cell.length_b 117.192 _cell.length_c 116.885 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,X 1 1,2,3 B,R,S,T,U,V,W,Y 2 1,4,5 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 117.192 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 58.596 101.491249 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Q N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 157 A GLY 135 1_555 F RB RB . A RB 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc2 A O THR 322 A THR 300 1_555 L RB RB . A RB 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc3 F RB RB . A RB 344 1_555 X O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc4 B OD2 ASP 135 B ASP 113 1_555 V RB RB . B RB 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc5 B O GLU 223 B GLU 201 1_555 U RB RB . B RB 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc6 V RB RB . B RB 345 1_555 Y O HOH . B HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 224 n n O1 H1 P6G sing 225 n n C2 C3 P6G sing 226 n n C2 H21 P6G sing 227 n n C2 H22 P6G sing 228 n n C3 O4 P6G sing 229 n n C3 H31 P6G sing 230 n n C3 H32 P6G sing 231 n n O4 C5 P6G sing 232 n n C5 C6 P6G sing 233 n n C5 H51 P6G sing 234 n n C5 H52 P6G sing 235 n n C6 O7 P6G sing 236 n n C6 H61 P6G sing 237 n n C6 H62 P6G sing 238 n n O7 C8 P6G sing 239 n n C8 C9 P6G sing 240 n n C8 H81 P6G sing 241 n n C8 H82 P6G sing 242 n n C9 O10 P6G sing 243 n n C9 H91 P6G sing 244 n n C9 H92 P6G sing 245 n n O10 C11 P6G sing 246 n n C11 C12 P6G sing 247 n n C11 H111 P6G sing 248 n n C11 H112 P6G sing 249 n n C12 O13 P6G sing 250 n n C12 H121 P6G sing 251 n n C12 H122 P6G sing 252 n n O13 C14 P6G sing 253 n n C14 C15 P6G sing 254 n n C14 H141 P6G sing 255 n n C14 H142 P6G sing 256 n n C15 O16 P6G sing 257 n n C15 H151 P6G sing 258 n n C15 H152 P6G sing 259 n n O16 C17 P6G sing 260 n n C17 C18 P6G sing 261 n n C17 H171 P6G sing 262 n n C17 H172 P6G sing 263 n n C18 O19 P6G sing 264 n n C18 H181 P6G sing 265 n n C18 H182 P6G sing 266 n n O19 H19 P6G sing 267 n n # _atom_sites.entry_id 3HWB _atom_sites.fract_transf_matrix[1][1] 0.008533 _atom_sites.fract_transf_matrix[1][2] 0.004927 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RB A 1 341 341 RB RB . D 2 RB A 1 342 342 RB RB . E 2 RB A 1 343 343 RB RB . F 2 RB A 1 344 344 RB RB . G 2 RB A 1 345 345 RB RB . H 2 RB A 1 346 346 RB RB . I 2 RB A 1 347 347 RB RB . J 2 RB A 1 348 348 RB RB . K 2 RB A 1 349 349 RB RB . L 2 RB A 1 350 350 RB RB . M 2 RB A 1 351 351 RB RB . N 2 RB A 1 352 352 RB RB . O 2 RB A 1 353 353 RB RB . P 2 RB A 1 354 354 RB RB . Q 3 P6G A 1 355 355 P6G P6G . R 2 RB B 1 341 341 RB RB . S 2 RB B 1 342 342 RB RB . T 2 RB B 1 343 343 RB RB . U 2 RB B 1 344 344 RB RB . V 2 RB B 1 345 345 RB RB . W 3 P6G B 1 346 346 P6G P6G . X 4 HOH A 1 356 356 HOH HOH . X 4 HOH A 2 357 357 HOH HOH . X 4 HOH A 3 358 358 HOH HOH . X 4 HOH A 4 359 359 HOH HOH . X 4 HOH A 5 360 360 HOH HOH . X 4 HOH A 6 361 361 HOH HOH . X 4 HOH A 7 362 362 HOH HOH . X 4 HOH A 8 363 363 HOH HOH . X 4 HOH A 9 364 364 HOH HOH . X 4 HOH A 10 365 365 HOH HOH . X 4 HOH A 11 366 366 HOH HOH . X 4 HOH A 12 367 367 HOH HOH . X 4 HOH A 13 368 368 HOH HOH . X 4 HOH A 14 369 369 HOH HOH . Y 4 HOH B 1 347 347 HOH HOH . Y 4 HOH B 2 348 348 HOH HOH . Y 4 HOH B 3 349 349 HOH HOH . Y 4 HOH B 4 350 350 HOH HOH . Y 4 HOH B 5 351 351 HOH HOH . Y 4 HOH B 6 352 352 HOH HOH . Y 4 HOH B 7 353 353 HOH HOH . Y 4 HOH B 8 354 354 HOH HOH . Y 4 HOH B 9 355 355 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . Q 3 51.253 12.317 33.713 1 76.43 ? O1 P6G 355 A 1 HETATM 2 C C2 P6G . . . Q 3 51.022 12.965 32.457 1 78.05 ? C2 P6G 355 A 1 HETATM 3 C C3 P6G . . . Q 3 49.559 13.384 32.363 1 78.93 ? C3 P6G 355 A 1 HETATM 4 O O4 P6G . . . Q 3 49.297 14.406 33.322 1 81.77 ? O4 P6G 355 A 1 HETATM 5 C C5 P6G . . . Q 3 47.948 14.866 33.257 1 81.44 ? C5 P6G 355 A 1 HETATM 6 C C6 P6G . . . Q 3 47.34 14.874 34.655 1 82.29 ? C6 P6G 355 A 1 HETATM 7 O O7 P6G . . . Q 3 48.186 15.603 35.542 1 82.09 ? O7 P6G 355 A 1 HETATM 8 C C8 P6G . . . Q 3 47.443 16.466 36.4 1 80.7 ? C8 P6G 355 A 1 HETATM 9 C C9 P6G . . . Q 3 47.82 16.19 37.851 1 80.55 ? C9 P6G 355 A 1 HETATM 10 O O10 P6G . . . Q 3 47.383 17.269 38.675 1 80.43 ? O10 P6G 355 A 1 HETATM 11 C C11 P6G . . . Q 3 46.478 16.832 39.688 1 80.51 ? C11 P6G 355 A 1 HETATM 12 C C12 P6G . . . Q 3 46.949 17.336 41.047 1 79.91 ? C12 P6G 355 A 1 HETATM 13 O O13 P6G . . . Q 3 46.498 16.45 42.07 1 81.03 ? O13 P6G 355 A 1 HETATM 14 C C14 P6G . . . Q 3 45.773 17.14 43.086 1 81.6 ? C14 P6G 355 A 1 HETATM 15 C C15 P6G . . . Q 3 45.364 16.161 44.18 1 81.37 ? C15 P6G 355 A 1 HETATM 16 O O16 P6G . . . Q 3 46.409 16.067 45.146 1 82.42 ? O16 P6G 355 A 1 HETATM 17 C C17 P6G . . . Q 3 46.054 15.207 46.227 1 81.62 ? C17 P6G 355 A 1 HETATM 18 C C18 P6G . . . Q 3 47.238 15.071 47.175 1 80.64 ? C18 P6G 355 A 1 HETATM 19 O O19 P6G . . . Q 3 47.568 16.355 47.716 1 79.08 ? O19 P6G 355 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 19 #