data_3HWE # _model_server_result.job_id sflnMfeFcjN8qylaNz1JIw _model_server_result.datetime_utc '2024-10-18 04:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":181}' # _entry.id 3HWE # _exptl.entry_id 3HWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.563 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl N~6~-acetyl-N~2~-[(2,3-dihydroxyphenyl)carbonyl]-N~6~-hydroxy-D-lysyl-N~6~-acetyl-N~6~-hydroxy-L-lysinate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HWE _cell.length_a 115.428 _cell.length_b 115.428 _cell.length_c 119.289 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,T 1 1 B,K,L,M,U 2 1 C,N,O,P,Q,R,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 D FE FE . A FE 179 1_555 E O2 RKS . A RKS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 D FE FE . A FE 179 1_555 E O1 RKS . A RKS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 D FE FE . A FE 179 1_555 F O2 RKS . A RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc4 D FE FE . A FE 179 1_555 F O7 RKS . A RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc5 D FE FE . A FE 179 1_555 F O6 RKS . A RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc6 D FE FE . A FE 179 1_555 F O1 RKS . A RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 K FE FE . B FE 179 1_555 L O1 RKS . B RKS 180 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.851 ? metalc ? metalc8 K FE FE . B FE 179 1_555 L O1 RKS . B RKS 180 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.816 ? metalc ? metalc9 K FE FE . B FE 179 1_555 M O1 RKS . B RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc10 K FE FE . B FE 179 1_555 M O2 RKS . B RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc11 K FE FE . B FE 179 1_555 M O10 RKS . B RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc12 K FE FE . B FE 179 1_555 M O9 RKS . B RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc13 N FE FE . C FE 179 1_555 O O1 RKS . C RKS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc14 N FE FE . C FE 179 1_555 O O2 RKS . C RKS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc15 N FE FE . C FE 179 1_555 P O1 RKS . C RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 N FE FE . C FE 179 1_555 P O2 RKS . C RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 N FE FE . C FE 179 1_555 P O6 RKS . C RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc18 N FE FE . C FE 179 1_555 P O7 RKS . C RKS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C24 H36 N4 O10' _chem_comp.formula_weight 540.563 _chem_comp.id RKS _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl N~6~-acetyl-N~2~-[(2,3-dihydroxyphenyl)carbonyl]-N~6~-hydroxy-D-lysyl-N~6~-acetyl-N~6~-hydroxy-L-lysinate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-catecholamide bis-lysine(hydroxamate) methyl ester' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C8 RKS sing 290 n n N1 C9 RKS sing 291 n n N1 HN1 RKS sing 292 n n O1 HO1 RKS sing 293 n n C2 C1 RKS sing 294 n y C2 O1 RKS sing 295 n n N4 C12 RKS sing 296 n n N4 HN2 RKS sing 297 n n O2 C4 RKS sing 298 n n O2 HO2 RKS sing 299 n n C4 C2 RKS doub 300 n y C5 C4 RKS sing 301 n y C5 C6 RKS doub 302 n y N2 C19 RKS sing 303 n n C6 C7 RKS sing 304 n y C6 H5 RKS sing 305 n n C7 C1 RKS doub 306 n y C7 H6 RKS sing 307 n n O4 C11 RKS doub 308 n n C8 N1 RKS sing 309 n n C8 O3 RKS doub 310 n n O5 C22 RKS sing 311 n n O6 N2 RKS sing 312 n n O6 HO7 RKS sing 313 n n O7 C20 RKS doub 314 n n C9 C10 RKS sing 315 n n C9 HO8 RKS sing 316 n n C10 C13 RKS sing 317 n n C10 H12 RKS sing 318 n n C10 H13 RKS sing 319 n n C11 N4 RKS sing 320 n n C11 C9 RKS sing 321 n n C12 C15 RKS sing 322 n n C12 H13A RKS sing 323 n n C13 C14 RKS sing 324 n n C13 H17 RKS sing 325 n n C13 H18 RKS sing 326 n n C14 C23 RKS sing 327 n n C14 H18A RKS sing 328 n n C14 H19 RKS sing 329 n n C15 O5 RKS sing 330 n n C15 O8 RKS doub 331 n n C16 C12 RKS sing 332 n n C16 H19A RKS sing 333 n n C16 H19B RKS sing 334 n n C17 C16 RKS sing 335 n n C17 H30 RKS sing 336 n n C17 H30A RKS sing 337 n n C18 C17 RKS sing 338 n n C18 H31 RKS sing 339 n n C18 H31A RKS sing 340 n n C19 C18 RKS sing 341 n n C19 H32 RKS sing 342 n n C19 H32A RKS sing 343 n n C20 N2 RKS sing 344 n n C20 C21 RKS sing 345 n n C21 H33 RKS sing 346 n n C21 H33A RKS sing 347 n n C21 H37 RKS sing 348 n n C22 H311 RKS sing 349 n n C22 H321 RKS sing 350 n n C22 H331 RKS sing 351 n n C23 N3 RKS sing 352 n n C23 H34 RKS sing 353 n n C23 H35 RKS sing 354 n n N3 C24 RKS sing 355 n n N3 O9 RKS sing 356 n n C24 O10 RKS doub 357 n n C24 C25 RKS sing 358 n n O9 H36 RKS sing 359 n n C25 H371 RKS sing 360 n n C25 H38 RKS sing 361 n n C25 H39 RKS sing 362 n n C5 H4 RKS sing 363 n n # _atom_sites.entry_id 3HWE _atom_sites.fract_transf_matrix[1][1] 0.008663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 179 2 FE FE . E 3 RKS A 1 180 1 RKS RKS . F 3 RKS A 1 181 1 RKS RKS . G 4 GOL A 1 182 1 GOL GOL . H 4 GOL A 1 183 2 GOL GOL . I 5 NA A 1 184 1 NA NA . J 5 NA A 1 185 4 NA NA . K 2 FE B 1 179 1 FE FE . L 3 RKS B 1 180 1 RKS RKS . M 3 RKS B 1 181 1 RKS RKS . N 2 FE C 1 179 3 FE FE . O 3 RKS C 1 180 1 RKS RKS . P 3 RKS C 1 181 1 RKS RKS . Q 5 NA C 1 182 2 NA NA . R 5 NA C 1 183 3 NA NA . S 6 SO4 C 1 184 1 SO4 SO4 . T 7 HOH A 1 186 1 HOH HOH . T 7 HOH A 2 187 2 HOH HOH . T 7 HOH A 3 188 3 HOH HOH . T 7 HOH A 4 189 4 HOH HOH . T 7 HOH A 5 190 5 HOH HOH . T 7 HOH A 6 191 6 HOH HOH . T 7 HOH A 7 192 7 HOH HOH . T 7 HOH A 8 193 8 HOH HOH . T 7 HOH A 9 194 10 HOH HOH . T 7 HOH A 10 195 11 HOH HOH . T 7 HOH A 11 196 12 HOH HOH . T 7 HOH A 12 197 18 HOH HOH . T 7 HOH A 13 198 32 HOH HOH . T 7 HOH A 14 199 33 HOH HOH . T 7 HOH A 15 200 38 HOH HOH . T 7 HOH A 16 201 42 HOH HOH . T 7 HOH A 17 202 54 HOH HOH . T 7 HOH A 18 203 56 HOH HOH . T 7 HOH A 19 204 77 HOH HOH . T 7 HOH A 20 205 90 HOH HOH . T 7 HOH A 21 206 91 HOH HOH . T 7 HOH A 22 207 95 HOH HOH . T 7 HOH A 23 208 97 HOH HOH . T 7 HOH A 24 209 101 HOH HOH . T 7 HOH A 25 210 105 HOH HOH . T 7 HOH A 26 211 106 HOH HOH . U 7 HOH B 1 182 13 HOH HOH . U 7 HOH B 2 183 14 HOH HOH . U 7 HOH B 3 184 15 HOH HOH . U 7 HOH B 4 185 16 HOH HOH . U 7 HOH B 5 186 34 HOH HOH . U 7 HOH B 6 187 44 HOH HOH . U 7 HOH B 7 188 50 HOH HOH . U 7 HOH B 8 189 65 HOH HOH . U 7 HOH B 9 190 72 HOH HOH . U 7 HOH B 10 191 75 HOH HOH . U 7 HOH B 11 192 107 HOH HOH . U 7 HOH B 12 193 108 HOH HOH . V 7 HOH C 1 185 17 HOH HOH . V 7 HOH C 2 186 20 HOH HOH . V 7 HOH C 3 187 21 HOH HOH . V 7 HOH C 4 188 22 HOH HOH . V 7 HOH C 5 189 23 HOH HOH . V 7 HOH C 6 190 24 HOH HOH . V 7 HOH C 7 191 26 HOH HOH . V 7 HOH C 8 192 27 HOH HOH . V 7 HOH C 9 193 28 HOH HOH . V 7 HOH C 10 194 29 HOH HOH . V 7 HOH C 11 195 30 HOH HOH . V 7 HOH C 12 196 31 HOH HOH . V 7 HOH C 13 197 35 HOH HOH . V 7 HOH C 14 198 36 HOH HOH . V 7 HOH C 15 199 37 HOH HOH . V 7 HOH C 16 200 43 HOH HOH . V 7 HOH C 17 201 45 HOH HOH . V 7 HOH C 18 202 46 HOH HOH . V 7 HOH C 19 203 48 HOH HOH . V 7 HOH C 20 204 51 HOH HOH . V 7 HOH C 21 205 52 HOH HOH . V 7 HOH C 22 206 53 HOH HOH . V 7 HOH C 23 207 57 HOH HOH . V 7 HOH C 24 208 60 HOH HOH . V 7 HOH C 25 209 63 HOH HOH . V 7 HOH C 26 210 67 HOH HOH . V 7 HOH C 27 211 68 HOH HOH . V 7 HOH C 28 212 69 HOH HOH . V 7 HOH C 29 213 73 HOH HOH . V 7 HOH C 30 214 74 HOH HOH . V 7 HOH C 31 215 79 HOH HOH . V 7 HOH C 32 216 80 HOH HOH . V 7 HOH C 33 217 81 HOH HOH . V 7 HOH C 34 218 83 HOH HOH . V 7 HOH C 35 219 84 HOH HOH . V 7 HOH C 36 220 86 HOH HOH . V 7 HOH C 37 221 88 HOH HOH . V 7 HOH C 38 222 93 HOH HOH . V 7 HOH C 39 223 99 HOH HOH . V 7 HOH C 40 224 100 HOH HOH . V 7 HOH C 41 225 103 HOH HOH . V 7 HOH C 42 226 104 HOH HOH . V 7 HOH C 43 227 109 HOH HOH . V 7 HOH C 44 228 110 HOH HOH . V 7 HOH C 45 229 112 HOH HOH . V 7 HOH C 46 230 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RKS . . . P 3 46.546 37.268 40.281 1 53.59 ? C1 RKS 181 C 1 HETATM 2 N N1 RKS . . . P 3 48.078 35.378 40.025 1 54.71 ? N1 RKS 181 C 1 HETATM 3 O O1 RKS . . . P 3 47.992 37.575 42.166 1 52.59 ? O1 RKS 181 C 1 HETATM 4 C C2 RKS . . . P 3 47.138 38.091 41.237 1 53.03 ? C2 RKS 181 C 1 HETATM 5 N N4 RKS . . . P 3 49.604 33.551 42.077 1 54.64 ? N4 RKS 181 C 1 HETATM 6 O O2 RKS . . . P 3 47.441 40.251 42.188 1 52.13 ? O2 RKS 181 C 1 HETATM 7 C C4 RKS . . . P 3 46.861 39.452 41.252 1 52.76 ? C4 RKS 181 C 1 HETATM 8 O O3 RKS . . . P 3 45.917 35.007 40.485 1 54.71 ? O3 RKS 181 C 1 HETATM 9 C C5 RKS . . . P 3 45.99 40 40.312 1 52.86 ? C5 RKS 181 C 1 HETATM 10 N N2 RKS . . . P 3 48.719 37.169 45.741 1 50.03 ? N2 RKS 181 C 1 HETATM 11 C C6 RKS . . . P 3 45.392 39.18 39.357 1 52.93 ? C6 RKS 181 C 1 HETATM 12 C C7 RKS . . . P 3 45.67 37.815 39.342 1 53.15 ? C7 RKS 181 C 1 HETATM 13 O O4 RKS . . . P 3 47.485 32.8 41.791 1 54.86 ? O4 RKS 181 C 1 HETATM 14 C C8 RKS . . . P 3 46.833 35.789 40.267 1 54.27 ? C8 RKS 181 C 1 HETATM 15 O O5 RKS . . . P 3 49.438 30.997 44.576 1 55.1 ? O5 RKS 181 C 1 HETATM 16 O O6 RKS . . . P 3 49.592 37.415 44.682 1 49.79 ? O6 RKS 181 C 1 HETATM 17 O O7 RKS . . . P 3 47.264 38.575 44.825 1 48.32 ? O7 RKS 181 C 1 HETATM 18 O O8 RKS . . . P 3 50.12 30.735 42.39 1 55.37 ? O8 RKS 181 C 1 HETATM 19 C C9 RKS . . . P 3 48.496 33.977 39.996 1 54.69 ? C9 RKS 181 C 1 HETATM 20 C C10 RKS . . . P 3 47.561 33.225 39.048 1 54.8 ? C10 RKS 181 C 1 HETATM 21 C C11 RKS . . . P 3 48.478 33.381 41.376 1 54.69 ? C11 RKS 181 C 1 HETATM 22 C C12 RKS . . . P 3 49.844 33.065 43.439 1 54.46 ? C12 RKS 181 C 1 HETATM 23 C C15 RKS . . . P 3 49.772 31.558 43.541 1 55.07 ? C15 RKS 181 C 1 HETATM 24 C C16 RKS . . . P 3 48.822 33.766 44.342 1 53.6 ? C16 RKS 181 C 1 HETATM 25 C C17 RKS . . . P 3 49.363 33.927 45.76 1 52.82 ? C17 RKS 181 C 1 HETATM 26 C C18 RKS . . . P 3 48.513 34.896 46.572 1 51.84 ? C18 RKS 181 C 1 HETATM 27 C C19 RKS . . . P 3 49.194 36.247 46.766 1 51 ? C19 RKS 181 C 1 HETATM 28 C C20 RKS . . . P 3 47.549 37.813 45.731 1 48.89 ? C20 RKS 181 C 1 HETATM 29 C C21 RKS . . . P 3 46.597 37.569 46.864 1 48.4 ? C21 RKS 181 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #