data_3HWF # _model_server_result.job_id u0-tefW415RrawpOMolpXQ _model_server_result.datetime_utc '2024-11-29 16:53:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":182}' # _entry.id 3HWF # _exptl.entry_id 3HWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 555.537 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[bis(2-{[(2,3-dihydroxyphenyl)carbonyl]amino}ethyl)amino]ethyl}-1-hydroxy-6-oxo-1,6-dihydropyridine-2-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HWF _cell.length_a 114.802 _cell.length_b 114.802 _cell.length_c 118.352 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,W 1 1 B,K,L,M,X 2 1 C,N,O,P,Q,R,S,T,U,V,Y 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 M N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A O ASN 149 A ASN 129 1_555 J NA NA . A NA 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 D FE FE . A FE 179 1_555 H O15 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 D FE FE . A FE 179 1_555 H O40 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc4 D FE FE . A FE 179 1_555 H O39 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 D FE FE . A FE 179 1_555 H O30 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc6 D FE FE . A FE 179 1_555 H O29 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 D FE FE . A FE 179 1_555 H O14 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc8 K FE FE . B FE 179 1_555 M O14 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc9 K FE FE . B FE 179 1_555 M O15 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc10 K FE FE . B FE 179 1_555 M O30 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc11 K FE FE . B FE 179 1_555 M O40 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc12 K FE FE . B FE 179 1_555 M O39 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc13 K FE FE . B FE 179 1_555 M O29 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc14 N FE FE . C FE 179 1_555 Q O14 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc15 N FE FE . C FE 179 1_555 Q O15 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 N FE FE . C FE 179 1_555 Q O39 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc17 N FE FE . C FE 179 1_555 Q O30 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc18 N FE FE . C FE 179 1_555 Q O29 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc19 N FE FE . C FE 179 1_555 Q O40 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'C26 H29 N5 O9' _chem_comp.formula_weight 555.537 _chem_comp.id TC2 _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[bis(2-{[(2,3-dihydroxyphenyl)carbonyl]amino}ethyl)amino]ethyl}-1-hydroxy-6-oxo-1,6-dihydropyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Tren bis-2,3-catecholamido mono-N-hydroxypyridin-2-one-6-amide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 TC2 doub 307 n y C7 C1 TC2 sing 308 n n C1 C2 TC2 sing 309 n y C2 C3 TC2 doub 310 n y C2 O14 TC2 sing 311 n n C4 C3 TC2 sing 312 n y C3 O15 TC2 sing 313 n n C5 C4 TC2 doub 314 n y C4 H4 TC2 sing 315 n n C6 C5 TC2 sing 316 n y C5 H5 TC2 sing 317 n n C6 H6 TC2 sing 318 n n N9 C7 TC2 sing 319 n n C7 O8 TC2 doub 320 n n N9 C10 TC2 sing 321 n n N9 HN9 TC2 sing 322 n n C11 C10 TC2 sing 323 n n C10 H10 TC2 sing 324 n n C10 H10A TC2 sing 325 n n C11 N12 TC2 sing 326 n n C11 H11 TC2 sing 327 n n C11 H11A TC2 sing 328 n n C13 N12 TC2 sing 329 n n N12 C18 TC2 sing 330 n n C13 C16 TC2 sing 331 n n C13 H13 TC2 sing 332 n n C13 H13A TC2 sing 333 n n O14 HO14 TC2 sing 334 n n O15 HO15 TC2 sing 335 n n C16 N17 TC2 sing 336 n n C16 H16 TC2 sing 337 n n C16 H16A TC2 sing 338 n n N17 C31 TC2 sing 339 n n N17 HN17 TC2 sing 340 n n C18 C19 TC2 sing 341 n n C18 H18 TC2 sing 342 n n C18 H18A TC2 sing 343 n n C19 N20 TC2 sing 344 n n C19 H19 TC2 sing 345 n n C19 H19A TC2 sing 346 n n N20 C21 TC2 sing 347 n n N20 HN20 TC2 sing 348 n n O22 C21 TC2 doub 349 n n C21 C23 TC2 sing 350 n n N24 C23 TC2 sing 351 n n C23 C28 TC2 doub 352 n n O29 N24 TC2 sing 353 n n N24 C25 TC2 sing 354 n n O30 C25 TC2 doub 355 n n C25 C26 TC2 sing 356 n n C26 C27 TC2 doub 357 n n C26 H26 TC2 sing 358 n n C28 C27 TC2 sing 359 n n C27 H27 TC2 sing 360 n n C28 H28 TC2 sing 361 n n O29 HO29 TC2 sing 362 n n O32 C31 TC2 doub 363 n n C31 C33 TC2 sing 364 n n C33 C34 TC2 doub 365 n y C33 C38 TC2 sing 366 n y O39 C34 TC2 sing 367 n n C34 C35 TC2 sing 368 n y C35 O40 TC2 sing 369 n n C35 C36 TC2 doub 370 n y C37 C36 TC2 sing 371 n y C36 H36 TC2 sing 372 n n C38 C37 TC2 doub 373 n y C37 H37 TC2 sing 374 n n C38 H38 TC2 sing 375 n n O39 HO39 TC2 sing 376 n n O40 HO40 TC2 sing 377 n n # _atom_sites.entry_id 3HWF _atom_sites.fract_transf_matrix[1][1] 0.008711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 179 1 FE FE . E 3 SO4 A 1 180 2 SO4 SO4 . F 3 SO4 A 1 181 3 SO4 SO4 . G 4 NA A 1 182 1 NA NA . H 5 TC2 A 1 183 1 TC2 TC2 . I 6 CL A 1 184 1 CL CL . J 4 NA A 1 185 1 NA NA . K 2 FE B 1 179 2 FE FE . L 4 NA B 1 180 1 NA NA . M 5 TC2 B 1 181 1 TC2 TC2 . N 2 FE C 1 179 3 FE FE . O 3 SO4 C 1 180 4 SO4 SO4 . P 3 SO4 C 1 181 5 SO4 SO4 . Q 5 TC2 C 1 182 1 TC2 TC2 . R 6 CL C 1 183 1 CL CL . S 7 GOL C 1 3731 3731 GOL GOL . T 7 GOL C 1 184 3731 GOL GOL . U 4 NA C 1 185 1 NA NA . V 7 GOL C 1 186 3731 GOL GOL . W 8 HOH A 1 186 2 HOH HOH . W 8 HOH A 2 187 6 HOH HOH . W 8 HOH A 3 188 15 HOH HOH . W 8 HOH A 4 189 23 HOH HOH . W 8 HOH A 5 190 28 HOH HOH . W 8 HOH A 6 191 29 HOH HOH . W 8 HOH A 7 192 30 HOH HOH . X 8 HOH B 1 182 31 HOH HOH . Y 8 HOH C 1 187 8 HOH HOH . Y 8 HOH C 2 188 9 HOH HOH . Y 8 HOH C 3 189 14 HOH HOH . Y 8 HOH C 4 190 17 HOH HOH . Y 8 HOH C 5 191 18 HOH HOH . Y 8 HOH C 6 192 21 HOH HOH . Y 8 HOH C 7 193 25 HOH HOH . Y 8 HOH C 8 194 26 HOH HOH . Y 8 HOH C 9 195 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TC2 . . . Q 5 46.656 37.614 39.351 1 49.6 ? C1 TC2 182 C 1 HETATM 2 C C2 TC2 . . . Q 5 47.094 38.156 40.547 1 48.44 ? C2 TC2 182 C 1 HETATM 3 C C3 TC2 . . . Q 5 46.707 39.434 40.913 1 47.69 ? C3 TC2 182 C 1 HETATM 4 C C4 TC2 . . . Q 5 45.878 40.176 40.08 1 47.77 ? C4 TC2 182 C 1 HETATM 5 C C5 TC2 . . . Q 5 45.437 39.634 38.878 1 48.05 ? C5 TC2 182 C 1 HETATM 6 C C6 TC2 . . . Q 5 45.827 38.351 38.514 1 48.69 ? C6 TC2 182 C 1 HETATM 7 C C7 TC2 . . . Q 5 47.077 36.228 38.958 1 51.23 ? C7 TC2 182 C 1 HETATM 8 O O8 TC2 . . . Q 5 46.307 35.298 39.132 1 52.13 ? O8 TC2 182 C 1 HETATM 9 N N9 TC2 . . . Q 5 48.284 36.051 38.428 1 51.72 ? N9 TC2 182 C 1 HETATM 10 C C10 TC2 . . . Q 5 49.469 36.628 39.033 1 51.86 ? C10 TC2 182 C 1 HETATM 11 C C11 TC2 . . . Q 5 50.692 35.736 38.855 1 51.75 ? C11 TC2 182 C 1 HETATM 12 N N12 TC2 . . . Q 5 51.795 36.491 39.431 1 51.71 ? N12 TC2 182 C 1 HETATM 13 C C13 TC2 . . . Q 5 52.466 37.513 38.643 1 49.94 ? C13 TC2 182 C 1 HETATM 14 O O14 TC2 . . . Q 5 47.906 37.431 41.365 1 47.86 ? O14 TC2 182 C 1 HETATM 15 O O15 TC2 . . . Q 5 47.14 39.965 42.09 1 46.96 ? O15 TC2 182 C 1 HETATM 16 C C16 TC2 . . . Q 5 53.504 38.116 39.582 1 48.44 ? C16 TC2 182 C 1 HETATM 17 N N17 TC2 . . . Q 5 52.901 38.645 40.79 1 46.21 ? N17 TC2 182 C 1 HETATM 18 C C18 TC2 . . . Q 5 52.226 36.223 40.794 1 52.25 ? C18 TC2 182 C 1 HETATM 19 C C19 TC2 . . . Q 5 51.348 35.07 41.267 1 52.86 ? C19 TC2 182 C 1 HETATM 20 N N20 TC2 . . . Q 5 51.155 35.087 42.704 1 53.02 ? N20 TC2 182 C 1 HETATM 21 C C21 TC2 . . . Q 5 50.325 34.238 43.304 1 51.93 ? C21 TC2 182 C 1 HETATM 22 O O22 TC2 . . . Q 5 50.311 33.05 43.029 1 52.22 ? O22 TC2 182 C 1 HETATM 23 C C23 TC2 . . . Q 5 49.383 34.763 44.346 1 51.2 ? C23 TC2 182 C 1 HETATM 24 N N24 TC2 . . . Q 5 48.944 36.026 44.269 1 51.16 ? N24 TC2 182 C 1 HETATM 25 C C25 TC2 . . . Q 5 48.103 36.523 45.184 1 50.78 ? C25 TC2 182 C 1 HETATM 26 C C26 TC2 . . . Q 5 47.663 35.736 46.242 1 50.75 ? C26 TC2 182 C 1 HETATM 27 C C27 TC2 . . . Q 5 48.102 34.424 46.347 1 50.52 ? C27 TC2 182 C 1 HETATM 28 C C28 TC2 . . . Q 5 48.974 33.934 45.384 1 50.56 ? C28 TC2 182 C 1 HETATM 29 O O29 TC2 . . . Q 5 49.382 36.86 43.187 1 50.56 ? O29 TC2 182 C 1 HETATM 30 O O30 TC2 . . . Q 5 47.709 37.705 45.087 1 50.01 ? O30 TC2 182 C 1 HETATM 31 C C31 TC2 . . . Q 5 53.2 39.86 41.242 1 43.56 ? C31 TC2 182 C 1 HETATM 32 O O32 TC2 . . . Q 5 53.995 40.584 40.665 1 43.99 ? O32 TC2 182 C 1 HETATM 33 C C33 TC2 . . . Q 5 52.539 40.348 42.497 1 41.5 ? C33 TC2 182 C 1 HETATM 34 C C34 TC2 . . . Q 5 51.204 40.062 42.731 1 40.94 ? C34 TC2 182 C 1 HETATM 35 C C35 TC2 . . . Q 5 50.591 40.511 43.887 1 40.21 ? C35 TC2 182 C 1 HETATM 36 C C36 TC2 . . . Q 5 51.313 41.249 44.818 1 40.16 ? C36 TC2 182 C 1 HETATM 37 C C37 TC2 . . . Q 5 52.652 41.537 44.585 1 40.41 ? C37 TC2 182 C 1 HETATM 38 C C38 TC2 . . . Q 5 53.266 41.086 43.423 1 40.94 ? C38 TC2 182 C 1 HETATM 39 O O39 TC2 . . . Q 5 50.494 39.339 41.821 1 41.6 ? O39 TC2 182 C 1 HETATM 40 O O40 TC2 . . . Q 5 49.278 40.228 44.114 1 38.85 ? O40 TC2 182 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #