data_3HWF # _model_server_result.job_id y9aaej8WBs5oNVucBYY3ig _model_server_result.datetime_utc '2024-11-05 04:13:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":185}' # _entry.id 3HWF # _exptl.entry_id 3HWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HWF _cell.length_a 114.802 _cell.length_b 114.802 _cell.length_c 118.352 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,W 1 1 B,K,L,M,X 2 1 C,N,O,P,Q,R,S,T,U,V,Y 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 L N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A O ASN 149 A ASN 129 1_555 J NA NA . A NA 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 D FE FE . A FE 179 1_555 H O15 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 D FE FE . A FE 179 1_555 H O40 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc4 D FE FE . A FE 179 1_555 H O39 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 D FE FE . A FE 179 1_555 H O30 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc6 D FE FE . A FE 179 1_555 H O29 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 D FE FE . A FE 179 1_555 H O14 TC2 . A TC2 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc8 K FE FE . B FE 179 1_555 M O14 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc9 K FE FE . B FE 179 1_555 M O15 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc10 K FE FE . B FE 179 1_555 M O30 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc11 K FE FE . B FE 179 1_555 M O40 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc12 K FE FE . B FE 179 1_555 M O39 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc13 K FE FE . B FE 179 1_555 M O29 TC2 . B TC2 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc14 N FE FE . C FE 179 1_555 Q O14 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc15 N FE FE . C FE 179 1_555 Q O15 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 N FE FE . C FE 179 1_555 Q O39 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc17 N FE FE . C FE 179 1_555 Q O30 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc18 N FE FE . C FE 179 1_555 Q O29 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc19 N FE FE . C FE 179 1_555 Q O40 TC2 . C TC2 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HWF _atom_sites.fract_transf_matrix[1][1] 0.008711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 179 1 FE FE . E 3 SO4 A 1 180 2 SO4 SO4 . F 3 SO4 A 1 181 3 SO4 SO4 . G 4 NA A 1 182 1 NA NA . H 5 TC2 A 1 183 1 TC2 TC2 . I 6 CL A 1 184 1 CL CL . J 4 NA A 1 185 1 NA NA . K 2 FE B 1 179 2 FE FE . L 4 NA B 1 180 1 NA NA . M 5 TC2 B 1 181 1 TC2 TC2 . N 2 FE C 1 179 3 FE FE . O 3 SO4 C 1 180 4 SO4 SO4 . P 3 SO4 C 1 181 5 SO4 SO4 . Q 5 TC2 C 1 182 1 TC2 TC2 . R 6 CL C 1 183 1 CL CL . S 7 GOL C 1 3731 3731 GOL GOL . T 7 GOL C 1 184 3731 GOL GOL . U 4 NA C 1 185 1 NA NA . V 7 GOL C 1 186 3731 GOL GOL . W 8 HOH A 1 186 2 HOH HOH . W 8 HOH A 2 187 6 HOH HOH . W 8 HOH A 3 188 15 HOH HOH . W 8 HOH A 4 189 23 HOH HOH . W 8 HOH A 5 190 28 HOH HOH . W 8 HOH A 6 191 29 HOH HOH . W 8 HOH A 7 192 30 HOH HOH . X 8 HOH B 1 182 31 HOH HOH . Y 8 HOH C 1 187 8 HOH HOH . Y 8 HOH C 2 188 9 HOH HOH . Y 8 HOH C 3 189 14 HOH HOH . Y 8 HOH C 4 190 17 HOH HOH . Y 8 HOH C 5 191 18 HOH HOH . Y 8 HOH C 6 192 21 HOH HOH . Y 8 HOH C 7 193 25 HOH HOH . Y 8 HOH C 8 194 26 HOH HOH . Y 8 HOH C 9 195 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 15.891 _atom_site.Cartn_y 89.593 _atom_site.Cartn_z 64.311 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 185 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #