data_3HWG # _model_server_result.job_id opg-Pe_ipG7UV-peqUb7ew _model_server_result.datetime_utc '2024-11-25 00:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hwg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":182}' # _entry.id 3HWG # _exptl.entry_id 3HWG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HWG _cell.length_a 114.084 _cell.length_b 114.084 _cell.length_c 118.422 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HWG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,LA 1 1 B,R,S,T,U,MA 2 1 C,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,NA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 T N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A OG1 THR 113 A THR 93 1_555 N NA NA . A NA 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc2 A O GLY 115 A GLY 95 1_555 M NA NA . A NA 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc3 D FE FE . A FE 179 1_555 E O40 QED . A QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 D FE FE . A FE 179 1_555 E O31 QED . A QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc5 D FE FE . A FE 179 1_555 E O30 QED . A QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 D FE FE . A FE 179 1_555 E O8 QED . A QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc7 D FE FE . A FE 179 1_555 E O7 QED . A QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc8 D FE FE . A FE 179 1_555 E O39 QED . A QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc9 N NA NA . A NA 189 1_555 LA O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 R FE FE . B FE 179 1_555 S O39 QED . B QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc11 R FE FE . B FE 179 1_555 S O40 QED . B QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc12 R FE FE . B FE 179 1_555 S O8 QED . B QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc13 R FE FE . B FE 179 1_555 S O31 QED . B QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc14 R FE FE . B FE 179 1_555 S O30 QED . B QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc15 R FE FE . B FE 179 1_555 S O7 QED . B QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc16 V FE FE . C FE 179 1_555 W O39 QED . C QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc17 V FE FE . C FE 179 1_555 W O40 QED . C QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc18 V FE FE . C FE 179 1_555 W O30 QED . C QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc19 V FE FE . C FE 179 1_555 W O7 QED . C QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc20 V FE FE . C FE 179 1_555 W O31 QED . C QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc21 V FE FE . C FE 179 1_555 W O8 QED . C QED 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3HWG _atom_sites.fract_transf_matrix[1][1] 0.008765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 179 1 FE FE . E 3 QED A 1 180 1 QED QED . F 4 GOL A 1 181 1 GOL GOL . G 4 GOL A 1 182 2 GOL GOL . H 4 GOL A 1 183 3 GOL GOL . I 4 GOL A 1 184 8 GOL GOL . J 4 GOL A 1 185 12 GOL GOL . K 5 NA A 1 186 2 NA NA . L 5 NA A 1 187 4 NA NA . M 5 NA A 1 188 5 NA NA . N 5 NA A 1 189 6 NA NA . O 6 SO4 A 1 190 2 SO4 SO4 . P 6 SO4 A 1 191 4 SO4 SO4 . Q 6 SO4 A 1 192 6 SO4 SO4 . R 2 FE B 1 179 2 FE FE . S 3 QED B 1 180 2 QED QED . T 4 GOL B 1 181 11 GOL GOL . U 6 SO4 B 1 182 1 SO4 SO4 . V 2 FE C 1 179 3 FE FE . W 3 QED C 1 180 3 QED QED . X 7 CL C 1 181 1 CL CL . Y 4 GOL C 1 182 4 GOL GOL . Z 4 GOL C 1 183 5 GOL GOL . AA 4 GOL C 1 184 6 GOL GOL . BA 4 GOL C 1 185 7 GOL GOL . CA 4 GOL C 1 186 9 GOL GOL . DA 4 GOL C 1 187 10 GOL GOL . EA 5 NA C 1 188 1 NA NA . FA 5 NA C 1 189 3 NA NA . GA 5 NA C 1 190 7 NA NA . HA 5 NA C 1 191 8 NA NA . IA 6 SO4 C 1 192 3 SO4 SO4 . JA 6 SO4 C 1 193 5 SO4 SO4 . KA 6 SO4 C 1 194 7 SO4 SO4 . LA 8 HOH A 1 193 2 HOH HOH . LA 8 HOH A 2 194 3 HOH HOH . LA 8 HOH A 3 195 4 HOH HOH . LA 8 HOH A 4 196 8 HOH HOH . LA 8 HOH A 5 197 9 HOH HOH . LA 8 HOH A 6 198 10 HOH HOH . LA 8 HOH A 7 199 11 HOH HOH . LA 8 HOH A 8 200 26 HOH HOH . LA 8 HOH A 9 201 27 HOH HOH . LA 8 HOH A 10 202 28 HOH HOH . LA 8 HOH A 11 203 203 HOH HOH . LA 8 HOH A 12 204 29 HOH HOH . LA 8 HOH A 13 205 34 HOH HOH . LA 8 HOH A 14 206 40 HOH HOH . LA 8 HOH A 15 207 46 HOH HOH . LA 8 HOH A 16 208 47 HOH HOH . LA 8 HOH A 17 209 48 HOH HOH . LA 8 HOH A 18 210 210 HOH HOH . LA 8 HOH A 19 211 66 HOH HOH . LA 8 HOH A 20 212 67 HOH HOH . LA 8 HOH A 21 213 213 HOH HOH . LA 8 HOH A 22 214 71 HOH HOH . LA 8 HOH A 23 215 215 HOH HOH . LA 8 HOH A 24 216 77 HOH HOH . LA 8 HOH A 25 217 88 HOH HOH . LA 8 HOH A 26 218 93 HOH HOH . LA 8 HOH A 27 219 97 HOH HOH . LA 8 HOH A 28 220 220 HOH HOH . LA 8 HOH A 29 221 221 HOH HOH . LA 8 HOH A 30 222 99 HOH HOH . LA 8 HOH A 31 223 106 HOH HOH . LA 8 HOH A 32 224 108 HOH HOH . LA 8 HOH A 33 225 109 HOH HOH . LA 8 HOH A 34 226 115 HOH HOH . LA 8 HOH A 35 227 120 HOH HOH . LA 8 HOH A 36 228 126 HOH HOH . LA 8 HOH A 37 229 129 HOH HOH . LA 8 HOH A 38 230 131 HOH HOH . LA 8 HOH A 39 231 133 HOH HOH . LA 8 HOH A 40 232 135 HOH HOH . LA 8 HOH A 41 233 138 HOH HOH . LA 8 HOH A 42 234 140 HOH HOH . LA 8 HOH A 43 235 141 HOH HOH . LA 8 HOH A 44 236 143 HOH HOH . LA 8 HOH A 45 237 156 HOH HOH . LA 8 HOH A 46 238 176 HOH HOH . LA 8 HOH A 47 239 191 HOH HOH . LA 8 HOH A 48 240 192 HOH HOH . LA 8 HOH A 49 258 258 HOH HOH . LA 8 HOH A 50 260 260 HOH HOH . LA 8 HOH A 51 267 267 HOH HOH . LA 8 HOH A 52 269 269 HOH HOH . LA 8 HOH A 53 283 283 HOH HOH . LA 8 HOH A 54 285 285 HOH HOH . LA 8 HOH A 55 292 292 HOH HOH . LA 8 HOH A 56 294 294 HOH HOH . LA 8 HOH A 57 295 295 HOH HOH . LA 8 HOH A 58 296 296 HOH HOH . LA 8 HOH A 59 305 305 HOH HOH . LA 8 HOH A 60 306 306 HOH HOH . LA 8 HOH A 61 312 312 HOH HOH . LA 8 HOH A 62 313 313 HOH HOH . LA 8 HOH A 63 317 317 HOH HOH . LA 8 HOH A 64 319 319 HOH HOH . LA 8 HOH A 65 321 321 HOH HOH . LA 8 HOH A 66 323 323 HOH HOH . MA 8 HOH B 1 183 12 HOH HOH . MA 8 HOH B 2 184 13 HOH HOH . MA 8 HOH B 3 185 14 HOH HOH . MA 8 HOH B 4 186 15 HOH HOH . MA 8 HOH B 5 187 72 HOH HOH . MA 8 HOH B 6 188 95 HOH HOH . MA 8 HOH B 7 189 103 HOH HOH . MA 8 HOH B 8 190 104 HOH HOH . MA 8 HOH B 9 191 116 HOH HOH . MA 8 HOH B 10 192 134 HOH HOH . MA 8 HOH B 11 193 139 HOH HOH . MA 8 HOH B 12 194 158 HOH HOH . MA 8 HOH B 13 195 164 HOH HOH . MA 8 HOH B 14 196 167 HOH HOH . MA 8 HOH B 15 197 181 HOH HOH . MA 8 HOH B 16 247 247 HOH HOH . MA 8 HOH B 17 250 250 HOH HOH . MA 8 HOH B 18 307 307 HOH HOH . MA 8 HOH B 19 308 308 HOH HOH . NA 8 HOH C 1 195 1 HOH HOH . NA 8 HOH C 2 196 16 HOH HOH . NA 8 HOH C 3 197 17 HOH HOH . NA 8 HOH C 4 198 18 HOH HOH . NA 8 HOH C 5 199 19 HOH HOH . NA 8 HOH C 6 200 20 HOH HOH . NA 8 HOH C 7 201 21 HOH HOH . NA 8 HOH C 8 202 24 HOH HOH . NA 8 HOH C 9 203 25 HOH HOH . NA 8 HOH C 10 204 31 HOH HOH . NA 8 HOH C 11 205 35 HOH HOH . NA 8 HOH C 12 206 36 HOH HOH . NA 8 HOH C 13 207 37 HOH HOH . NA 8 HOH C 14 208 38 HOH HOH . NA 8 HOH C 15 209 39 HOH HOH . NA 8 HOH C 16 210 41 HOH HOH . NA 8 HOH C 17 211 211 HOH HOH . NA 8 HOH C 18 212 42 HOH HOH . NA 8 HOH C 19 213 43 HOH HOH . NA 8 HOH C 20 214 44 HOH HOH . NA 8 HOH C 21 215 49 HOH HOH . NA 8 HOH C 22 216 51 HOH HOH . NA 8 HOH C 23 217 52 HOH HOH . NA 8 HOH C 24 218 53 HOH HOH . NA 8 HOH C 25 219 219 HOH HOH . NA 8 HOH C 26 220 54 HOH HOH . NA 8 HOH C 27 221 55 HOH HOH . NA 8 HOH C 28 222 56 HOH HOH . NA 8 HOH C 29 223 61 HOH HOH . NA 8 HOH C 30 224 62 HOH HOH . NA 8 HOH C 31 225 64 HOH HOH . NA 8 HOH C 32 226 69 HOH HOH . NA 8 HOH C 33 227 73 HOH HOH . NA 8 HOH C 34 228 74 HOH HOH . NA 8 HOH C 35 229 75 HOH HOH . NA 8 HOH C 36 230 76 HOH HOH . NA 8 HOH C 37 231 80 HOH HOH . NA 8 HOH C 38 232 81 HOH HOH . NA 8 HOH C 39 233 82 HOH HOH . NA 8 HOH C 40 234 83 HOH HOH . NA 8 HOH C 41 235 235 HOH HOH . NA 8 HOH C 42 236 87 HOH HOH . NA 8 HOH C 43 237 237 HOH HOH . NA 8 HOH C 44 238 89 HOH HOH . NA 8 HOH C 45 239 90 HOH HOH . NA 8 HOH C 46 240 92 HOH HOH . NA 8 HOH C 47 241 96 HOH HOH . NA 8 HOH C 48 242 102 HOH HOH . NA 8 HOH C 49 243 119 HOH HOH . NA 8 HOH C 50 244 123 HOH HOH . NA 8 HOH C 51 245 124 HOH HOH . NA 8 HOH C 52 246 128 HOH HOH . NA 8 HOH C 53 247 136 HOH HOH . NA 8 HOH C 54 248 144 HOH HOH . NA 8 HOH C 55 249 145 HOH HOH . NA 8 HOH C 56 250 146 HOH HOH . NA 8 HOH C 57 251 148 HOH HOH . NA 8 HOH C 58 252 154 HOH HOH . NA 8 HOH C 59 253 162 HOH HOH . NA 8 HOH C 60 254 254 HOH HOH . NA 8 HOH C 61 255 170 HOH HOH . NA 8 HOH C 62 256 174 HOH HOH . NA 8 HOH C 63 257 188 HOH HOH . NA 8 HOH C 64 258 190 HOH HOH . NA 8 HOH C 65 259 194 HOH HOH . NA 8 HOH C 66 263 263 HOH HOH . NA 8 HOH C 67 273 273 HOH HOH . NA 8 HOH C 68 276 276 HOH HOH . NA 8 HOH C 69 282 282 HOH HOH . NA 8 HOH C 70 287 287 HOH HOH . NA 8 HOH C 71 288 288 HOH HOH . NA 8 HOH C 72 289 289 HOH HOH . NA 8 HOH C 73 291 291 HOH HOH . NA 8 HOH C 74 293 293 HOH HOH . NA 8 HOH C 75 298 298 HOH HOH . NA 8 HOH C 76 299 299 HOH HOH . NA 8 HOH C 77 301 301 HOH HOH . NA 8 HOH C 78 302 302 HOH HOH . NA 8 HOH C 79 303 303 HOH HOH . NA 8 HOH C 80 316 316 HOH HOH . NA 8 HOH C 81 320 320 HOH HOH . NA 8 HOH C 82 322 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Y 4 53.558 42.99 56.117 1 87.22 ? C1 GOL 182 C 1 HETATM 2 O O1 GOL . . . Y 4 53.572 44.341 55.705 1 87.17 ? O1 GOL 182 C 1 HETATM 3 C C2 GOL . . . Y 4 54.981 42.432 56.128 1 87.25 ? C2 GOL 182 C 1 HETATM 4 O O2 GOL . . . Y 4 55.874 43.408 56.623 1 87.18 ? O2 GOL 182 C 1 HETATM 5 C C3 GOL . . . Y 4 55.078 41.15 56.959 1 87.31 ? C3 GOL 182 C 1 HETATM 6 O O3 GOL . . . Y 4 56.264 41.124 57.728 1 87.38 ? O3 GOL 182 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #