data_3HWS # _model_server_result.job_id b39BQvdjBCLC9Y5Qrc3XXg _model_server_result.datetime_utc '2025-07-07 03:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 3HWS # _exptl.entry_id 3HWS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HWS _cell.length_a 54.085 _cell.length_b 178.498 _cell.length_c 201.369 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 A,E,F,G,H,I,J,X,Y,BA 2 1 B,C,D,K,L,M,N,O,P,Q,R,S,T,U,V,W,Z,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 K N N ? 2 U N N ? 2 X N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 294 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id W _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 900 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.923 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3HWS _atom_sites.fract_transf_matrix[1][1] 0.018489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 600 600 ADP ADP . H 3 SO4 A 1 700 700 SO4 SO4 . I 3 SO4 A 1 701 701 SO4 SO4 . J 3 SO4 A 1 705 705 SO4 SO4 . K 2 ADP B 1 601 601 ADP ADP . L 3 SO4 B 1 702 702 SO4 SO4 . M 3 SO4 B 1 707 707 SO4 SO4 . N 3 SO4 B 1 708 708 SO4 SO4 . O 3 SO4 B 1 709 709 SO4 SO4 . P 4 MG B 1 901 901 MG MG . Q 3 SO4 C 1 500 500 SO4 SO4 . R 3 SO4 C 1 703 703 SO4 SO4 . S 3 SO4 C 1 704 704 SO4 SO4 . T 3 SO4 C 1 706 706 SO4 SO4 . U 2 ADP D 1 602 602 ADP ADP . V 3 SO4 D 1 710 710 SO4 SO4 . W 4 MG D 1 900 900 MG MG . X 2 ADP E 1 603 603 ADP ADP . Y 3 SO4 F 1 500 500 SO4 SO4 . Z 5 HOH B 1 802 802 HOH HOH . AA 5 HOH C 1 800 800 HOH HOH . AA 5 HOH C 2 803 803 HOH HOH . AA 5 HOH C 3 804 804 HOH HOH . BA 5 HOH E 1 801 801 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 2 -20.808 -37.289 81.635 1 85.75 ? PB ADP 600 A 1 HETATM 2 O O1B ADP . . . G 2 -19.715 -37.223 80.595 1 100.62 ? O1B ADP 600 A 1 HETATM 3 O O2B ADP . . . G 2 -21.896 -36.268 81.435 1 85.22 ? O2B ADP 600 A 1 HETATM 4 O O3B ADP . . . G 2 -20.303 -37.327 83.062 1 81.92 ? O3B ADP 600 A 1 HETATM 5 P PA ADP . . . G 2 -22.622 -38.863 80.146 0 92.68 ? PA ADP 600 A 1 HETATM 6 O O1A ADP . . . G 2 -23.98 -38.391 80.641 1 88.22 ? O1A ADP 600 A 1 HETATM 7 O O2A ADP . . . G 2 -21.986 -38.115 78.992 0.65 96.54 ? O2A ADP 600 A 1 HETATM 8 O O3A ADP . . . G 2 -21.58 -38.695 81.382 1 93.66 ? O3A ADP 600 A 1 HETATM 9 O O5' ADP . . . G 2 -22.725 -40.439 79.729 1 103.09 ? O5' ADP 600 A 1 HETATM 10 C C5' ADP . . . G 2 -22.561 -40.869 78.369 1 106.98 ? C5' ADP 600 A 1 HETATM 11 C C4' ADP . . . G 2 -23.206 -42.22 78.014 0.23 112.85 ? C4' ADP 600 A 1 HETATM 12 O O4' ADP . . . G 2 -22.955 -43.212 79.008 0.84 109.16 ? O4' ADP 600 A 1 HETATM 13 C C3' ADP . . . G 2 -24.72 -42.134 77.855 1 113.96 ? C3' ADP 600 A 1 HETATM 14 O O3' ADP . . . G 2 -25.144 -42.131 76.483 0.7 119.2 ? O3' ADP 600 A 1 HETATM 15 C C2' ADP . . . G 2 -25.328 -43.254 78.692 1 110.98 ? C2' ADP 600 A 1 HETATM 16 O O2' ADP . . . G 2 -25.917 -44.329 77.942 1 120.3 ? O2' ADP 600 A 1 HETATM 17 C C1' ADP . . . G 2 -24.169 -43.795 79.51 1 106.5 ? C1' ADP 600 A 1 HETATM 18 N N9 ADP . . . G 2 -24.348 -43.53 80.968 1 97.32 ? N9 ADP 600 A 1 HETATM 19 C C8 ADP . . . G 2 -23.486 -42.849 81.759 1 93.48 ? C8 ADP 600 A 1 HETATM 20 N N7 ADP . . . G 2 -23.941 -42.804 83.047 1 85.51 ? N7 ADP 600 A 1 HETATM 21 C C5 ADP . . . G 2 -25.107 -43.464 83.097 1 86.06 ? C5 ADP 600 A 1 HETATM 22 C C6 ADP . . . G 2 -26.11 -43.792 84.144 0.81 82.35 ? C6 ADP 600 A 1 HETATM 23 N N6 ADP . . . G 2 -25.95 -43.393 85.431 0.72 78.75 ? N6 ADP 600 A 1 HETATM 24 N N1 ADP . . . G 2 -27.202 -44.508 83.784 0.8 86.38 ? N1 ADP 600 A 1 HETATM 25 C C2 ADP . . . G 2 -27.379 -44.913 82.516 0.83 93.2 ? C2 ADP 600 A 1 HETATM 26 N N3 ADP . . . G 2 -26.512 -44.652 81.515 1 95.75 ? N3 ADP 600 A 1 HETATM 27 C C4 ADP . . . G 2 -25.371 -43.945 81.729 1 93.16 ? C4 ADP 600 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #